Query gi|254781023|ref|YP_003065436.1| hypothetical protein CLIBASIA_04625 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 34
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 20:52:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781023.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1wth_D HUB protein 27, basepl 5.5 2E+02 0.0058 14.1 0.6 13 2-14 16-28 (58)
2 >3e8v_A Possible transglutamin 4.7 1.6E+02 0.0046 14.6 -0.4 18 4-21 43-60 (82)
3 >3jsl_A DNA ligase; NAD+-depen 4.4 2.4E+02 0.0072 13.7 0.4 29 4-32 14-48 (113)
4 >1ta8_A DNA ligase, NAD-depend 4.2 2.8E+02 0.0082 13.4 0.6 29 4-32 28-62 (146)
5 >2gu0_A Nonstructural protein 3.7 2.7E+02 0.0081 13.5 0.2 11 6-16 67-77 (164)
6 >1l9v_A Rotavirus-NSP2; alpha/ 3.7 2.8E+02 0.0083 13.4 0.2 11 6-16 70-80 (169)
7 >1b04_A Protein (DNA ligase); 3.7 3.4E+02 0.01 13.0 0.6 29 4-32 14-48 (132)
8 >3i10_A Putative glycerophosph 3.4 4.7E+02 0.014 12.4 1.5 29 3-31 3-31 (39)
9 >3bm3_A PSPGI restriction endo 3.1 4.8E+02 0.014 12.3 0.9 12 13-24 8-19 (126)
10 >1gad_O D-glyceraldehyde-3-pho 2.9 5.2E+02 0.016 12.1 1.0 34 1-34 31-67 (165)
No 1
>>1wth_D HUB protein 27, baseplate structural protein GP27; triple-stranded beta-helix, OB fold, pseudohexamer, T4 tail lysozyme, GP5-GP27; 2.80A {Enterobacteria phage T4} (D:246-303)
Probab=5.53 E-value=2e+02 Score=14.13 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCH
Q ss_conf 7310000376510
Q gi|254781023|r 2 KTQRRITSGKGDF 14 (34)
Q Consensus 2 ktqrritsgkgdf 14 (34)
|.|.||+.|+|+-
T Consensus 16 k~~~~ivtG~G~N 28 (58)
T 1wth_D 16 SSIPMITTGKGEN 28 (58)
T ss_dssp SCCCEEEETTCCE
T ss_pred CCCCEEEECCCCE
T ss_conf 5565799527732
No 2
>>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343} (A:)
Probab=4.70 E-value=1.6e+02 Score=14.59 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=13.0
Q ss_pred CCCCCCCCCCHHHHHHCC
Q ss_conf 100003765101112104
Q gi|254781023|r 4 QRRITSGKGDFRESATEN 21 (34)
Q Consensus 4 qrritsgkgdfresaten 21 (34)
+-+++.|+||+.-+|..+
T Consensus 43 ~a~lt~G~Gdmlv~Ask~ 60 (82)
T 3e8v_A 43 HASLTAGKGDMLVWASKD 60 (82)
T ss_dssp EEEEECCSEEEEEEEEET
T ss_pred EEEEEECCCCEEEEEECC
T ss_conf 499983687699999859
No 3
>>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB: 3jsn_A* (A:115-227)
Probab=4.36 E-value=2.4e+02 Score=13.69 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=20.2
Q ss_pred CCCCCCCCCCHHHHHHC------CCCCCCCCCCCC
Q ss_conf 10000376510111210------488642467422
Q gi|254781023|r 4 QRRITSGKGDFRESATE------NIPPSIKGKGEM 32 (34)
Q Consensus 4 qrritsgkgdfresate------nippsikgkgem 32 (34)
.+-+|-|.|..-|.-|+ +||..|+.++..
T Consensus 14 ~~a~TRGDG~~GeDvT~n~~~I~~iP~~l~~~~~l 48 (113)
T 3jsl_A 14 VQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLNV 48 (113)
T ss_dssp EEEEECTTSSEEEBCHHHHTTCTTSCSBCSSCCCE
T ss_pred EEEEECCCCCHHHEHHHHCCCCCCCCCCCCCCCCC
T ss_conf 88775689852215786366456887666898540
No 4
>>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis V583} (A:64-76,A:122-254)
Probab=4.25 E-value=2.8e+02 Score=13.44 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=19.6
Q ss_pred CCCCCCCCCCHHHHHHC------CCCCCCCCCCCC
Q ss_conf 10000376510111210------488642467422
Q gi|254781023|r 4 QRRITSGKGDFRESATE------NIPPSIKGKGEM 32 (34)
Q Consensus 4 qrritsgkgdfresate------nippsikgkgem 32 (34)
.+-+|-|.|..-|.-|+ +||.+|..++..
T Consensus 28 ~~A~TRGdG~~GeDVT~nv~~I~~IP~~l~~~~~l 62 (146)
T 1ta8_A 28 VRGATRGDGTVGENITENLRTVRSVPMRLTEPISV 62 (146)
T ss_dssp EEEEECTTSSEEEBCHHHHTTCTTSCSBCSSCCCE
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 89863466327788886310111331124688606
No 5
>>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C} (A:149-312)
Probab=3.75 E-value=2.7e+02 Score=13.45 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=8.3
Q ss_pred CCCCCCCCHHH
Q ss_conf 00037651011
Q gi|254781023|r 6 RITSGKGDFRE 16 (34)
Q Consensus 6 ritsgkgdfre 16 (34)
-||.|||.+|-
T Consensus 67 ~ItHGKgHyRv 77 (164)
T 2gu0_A 67 AISHGKRHWRL 77 (164)
T ss_dssp EECSSSSEEEE
T ss_pred EEECCCCEEEE
T ss_conf 99617860799
No 6
>>1l9v_A Rotavirus-NSP2; alpha/beta protein, HIT-like fold, octamer, two domain protein, viral protein; 2.60A {Simian 11 rotavirus} (A:149-317)
Probab=3.66 E-value=2.8e+02 Score=13.39 Aligned_cols=11 Identities=55% Similarity=0.854 Sum_probs=8.0
Q ss_pred CCCCCCCCHHH
Q ss_conf 00037651011
Q gi|254781023|r 6 RITSGKGDFRE 16 (34)
Q Consensus 6 ritsgkgdfre 16 (34)
-||.|||.+|-
T Consensus 70 vItHGKgHyRv 80 (169)
T 1l9v_A 70 VITHGKGHYRI 80 (169)
T ss_dssp EEECSSSSEEE
T ss_pred EEECCCCEEEE
T ss_conf 99617860799
No 7
>>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Bacillus stearothermophilus} (A:117-248)
Probab=3.66 E-value=3.4e+02 Score=13.02 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=19.9
Q ss_pred CCCCCCCCCCHHHHHHC------CCCCCCCCCCCC
Q ss_conf 10000376510111210------488642467422
Q gi|254781023|r 4 QRRITSGKGDFRESATE------NIPPSIKGKGEM 32 (34)
Q Consensus 4 qrritsgkgdfresate------nippsikgkgem 32 (34)
.+-+|-|.|..-|.-|+ +||.+|..++.+
T Consensus 14 v~A~TRGdG~~GeDVT~nv~~i~~iP~~l~~~~~l 48 (132)
T 1b04_A 14 VQGATRGDGTTGEDITENLKTIRSLPLRLKEPVSL 48 (132)
T ss_dssp EEEEECTTSSCEEBCHHHHHTCTTSCSBCSSCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 57742467505665899875224787545798440
No 8
>>3i10_A Putative glycerophosphoryl diester phosphodiesterase; NP_812074.1, structural genomics; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} (A:66-104)
Probab=3.44 E-value=4.7e+02 Score=12.37 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 31000037651011121048864246742
Q gi|254781023|r 3 TQRRITSGKGDFRESATENIPPSIKGKGE 31 (34)
Q Consensus 3 tqrritsgkgdfresatenippsikgkge 31 (34)
|--|.|.|+|..++..-+.|-----|.||
T Consensus 3 tldRtT~G~G~v~d~T~~el~~ld~g~ge 31 (39)
T 3i10_A 3 TLDRTTTGKGEIKNWTLADIKKLKLKDKD 31 (39)
T ss_dssp BSTTTBSCCSBGGGSCHHHHTTSCBBCTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 42421234565213566655443203577
No 9
>>3bm3_A PSPGI restriction endonuclease; endonuclease-DNA complex, restriction enzyme, PSPGI, base flipping, hydrolase/DNA complex; HET: DNA MSE CIT; 1.70A {Pyrococcus SP} (A:1-126)
Probab=3.07 E-value=4.8e+02 Score=12.34 Aligned_cols=12 Identities=50% Similarity=0.952 Sum_probs=0.0
Q ss_pred CHHHHHHCCCCC
Q ss_conf 101112104886
Q gi|254781023|r 13 DFRESATENIPP 24 (34)
Q Consensus 13 dfresatenipp 24 (34)
|.....|.||||
T Consensus 8 ditkkptqnipp 19 (126)
T 3bm3_A 8 DITKKPTQNIPP 19 (126)
T ss_dssp CTTSCGGGGSCC
T ss_pred ECCCCCCCCCCC
T ss_conf 513561013995
No 10
>>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} (O:149-313)
Probab=2.95 E-value=5.2e+02 Score=12.14 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=0.0
Q ss_pred CCCCCCCCCC-CCCHHHH--HHCCCCCCCCCCCCCCC
Q ss_conf 9731000037-6510111--21048864246742268
Q gi|254781023|r 1 MKTQRRITSG-KGDFRES--ATENIPPSIKGKGEMVG 34 (34)
Q Consensus 1 mktqrritsg-kgdfres--atenippsikgkgemvg 34 (34)
+-+|+.+.+- ..|+|.+ |..||-|+--|...-++
T Consensus 31 t~~Q~~~d~~~~kd~Rr~Raa~~nIiPt~TgAa~ai~ 67 (165)
T 1gad_O 31 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVG 67 (165)
T ss_dssp CTTSBSSSCCCSSCGGGGSBTTTCCEEEECCTTTTHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHH
T ss_conf 5752645536677643455110330142687110002
Done!