HHsearch alignment for GI: 254781024 and conserved domain: COG0445
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning].
Probab=98.51 E-value=2.5e-07 Score=69.77 Aligned_cols=139 Identities=20% Similarity=0.295 Sum_probs=77.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCC----CCEEC---HHHHHHHCCCHHHHCCCCCCCEE
Q ss_conf 647799989768999999999808997399997867-78986402----74033---36788867872641488543224
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-EVGAHILS----GAIID---PIGIDSLLPRWREDKGHPFHTVV 85 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~-~pG~~i~s----G~vl~---p~aL~eL~Pd~~e~~g~pl~~~v 85 (554)
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG--~ktlLlT~~~dtig~m-sCNPaIGG~~KG~lvrEIDAL-GG--~Mg~~~D~~~- 76 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMG--AKTLLLTLNLDTIGEM-SCNPAIGGPGKGHLVREIDAL-GG--LMGKAADKAG- 76 (621)
T ss_pred CCCEEEECCCCCCHHHHHHHHCCC--CEEEEEECCCCCEEEC-CCCCCCCCCCCCEEEEEEHHC-CC--HHHHHHHHCC-
T ss_conf 785699899842047777664369--8079997377744650-356445773553267752412-45--5777666507-
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC------CCEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 3669999779976773654356544678826888889899999999874------9533068224347762776201454
Q gi|254781024|r 86 KRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL------GVEIYCGFTATEIYYGKKGEALGIL 159 (554)
Q Consensus 86 ~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~------Gvei~~g~~v~~i~~~e~g~vvgv~ 159 (554)
T Consensus 77 --IQ~r~LN~s---------------KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~ 138 (621)
T COG0445 77 --IQFRMLNSS---------------KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVV 138 (621)
T ss_pred --CCHHHCCCC---------------CCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHH-HHHHHHCCCCEEEEEE
T ss_conf --865333677---------------7621045065442899999999998549995524766-6787133797689999
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 124324434665787563026774257860664
Q gi|254781024|r 160 TGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGA 192 (554)
Q Consensus 160 t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~ 192 (554)
T Consensus 139 t~~---------------G~~~~a~aVVlTTGT 156 (621)
T COG0445 139 TAD---------------GPEFHAKAVVLTTGT 156 (621)
T ss_pred ECC---------------CCEEECCEEEEEECC
T ss_conf 278---------------785106879996334