HHsearch alignment for GI: 254781024 and conserved domain: COG1053
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion].
Probab=99.41 E-value=1.6e-10 Score=92.01 Aligned_cols=162 Identities=22% Similarity=0.350 Sum_probs=99.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC-----CEEC-HH-----HHHHHC----------
Q ss_conf 03647799989768999999999808997399997867789864027-----4033-36-----788867----------
Q gi|254781024|r 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG-----AIID-PI-----GIDSLL---------- 70 (554)
Q Consensus 12 ~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG-----~vl~-p~-----aL~eL~---------- 70 (554)
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g--~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l 81 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAG--LKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL 81 (562)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 21169899878488899999999669--9579997236889853214565302146665456899899999998743676
Q ss_pred ----------------CCHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEH--HHHHHHHHHHHH
Q ss_conf ----------------87264148854322436699997799767736543565446788268888--898999999998
Q gi|254781024|r 71 ----------------PRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL--GQVCRWLKNKAE 132 (554)
Q Consensus 71 ----------------Pd~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r--~~fd~~L~~~Ae 132 (554)
T Consensus 82 ~dqd~i~~~~~~sp~~v~~Le~~G~~f~r~----------~~G~~~~r~fg--g~~~~rt~~~~~~tG~~ll~~L~~~~~ 149 (562)
T COG1053 82 GDQDAVEAFADEAPEAVDELEKWGVPFSRT----------EDGRIYQRRFG--GHSKPRTCFAADKTGHELLHTLYEQLL 149 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCC----------CCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 789999999986379999999808975447----------87660023468--888876322566675899999999987
Q ss_pred H-CCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 7-4953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 133 A-LGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 133 ~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~----------g~~~~~~akavilaTGG~g~~~ 205 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRT----------GELYVFRAKAVILATGGAGRLY 205 (562)
T ss_pred HHCCCHHHCCCEEHHHEECCCCCEEEEEEEECCC----------CCEEEEECCCEEEECCCCEEEE
T ss_conf 6313111100210212231798578899995478----------8489981464899338744777