HHsearch alignment for GI: 254781024 and conserved domain: COG2072
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].
Probab=98.98 E-value=1.4e-08 Score=78.53 Aligned_cols=137 Identities=23% Similarity=0.331 Sum_probs=74.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~-~~~i~Ek~~~~Gg~------------------W~~~r-y~--------~l~~~ 59 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVP-DFVIFEKRDDVGGT------------------WRYNR-YP--------GLRLD 59 (443)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCC------------------CCCCC-CC--------EEEEC
T ss_conf 55489989878899999999975998-67999705766786------------------55566-87--------16767
Q ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 79976773654356544678826888889899999999874953306822434776277620145412432443466578
Q gi|254781024|r 94 NAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGK 173 (554)
Q Consensus 94 ~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~ 173 (554)
T Consensus 60 ~p~~~~~~~~~p~~-~~~~~~~~~~~~~y~~~~~~~y~~~~~--i~~~~~v~~~~~~~~~~~w~V~~~~~~~-------- 128 (443)
T COG2072 60 SPKWLLGFPFLPFR-WDEAFAPFAEIKDYIKDYLEKYGLRFQ--IRFNTRVEVADWDEDTKRWTVTTSDGGT-------- 128 (443)
T ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCEEE--EECCCCEEEEEEECCCCEEEEEECCCCC--------
T ss_conf 97401158888877-655677764389999999998356045--0214525688630588706999648875--------
Q ss_pred CCCCEEEEEEEEEEEECCCCC
Q ss_conf 756302677425786066443
Q gi|254781024|r 174 HYIAPMLLLSKYMLVGEGACG 194 (554)
Q Consensus 174 ~~~~g~~i~Ak~vI~AdG~~s 194 (554)
T Consensus 129 ----~~-~~a~~vV~ATG~~~ 144 (443)
T COG2072 129 ----GE-LTADFVVVATGHLS 144 (443)
T ss_pred ----CE-EECCEEEECCCCCC
T ss_conf ----22-51267998305789