HHsearch alignment for GI: 254781024 and conserved domain: COG3486
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].
Probab=98.37 E-value=3e-06 Score=62.36 Aligned_cols=150 Identities=16% Similarity=0.225 Sum_probs=95.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~-~~~lFLerkp~F~WHp--Gmllegst---------------lQv~FlkDLVTl~ 66 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSG-LKSLFLERKPDFSWHP--GMLLEGST---------------LQVPFLKDLVTLV 66 (436)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCC-CCEEEEECCCCCCCCC--CCCCCCCC---------------CCCCCHHHHCCCC
T ss_conf 4026887048327899987350257-5257873478887678--75557864---------------4450056325535
Q ss_pred CCCCCEECCCCCCC----CCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEE--EEECCCCCCC
Q ss_conf 79976773654356----54467882688888989999999987495330682243477627762014--5412432443
Q gi|254781024|r 94 NAQRSIQIPHFCLP----DFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALG--ILTGEKGKNY 167 (554)
Q Consensus 94 ~~~~~~~~p~~~~p----~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvg--v~t~~~G~~k 167 (554)
T Consensus 67 ~PTs~ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~----- 140 (436)
T COG3486 67 DPTSPYSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN----- 140 (436)
T ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCCCCEECCCCCCCCCCEEEEEEECCC-----
T ss_conf 899830799999870657655420023555888999999998408-72336870122102477630589998278-----
Q ss_pred CCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 466578756302677425786066443255
Q gi|254781024|r 168 DGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 168 ~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
T Consensus 141 ----------~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 141 ----------GTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred ----------CCEEEEEEEEECCCCCCCCC
T ss_conf ----------84788603798259976787