HHsearch alignment for GI: 254781024 and conserved domain: KOG1399

>KOG1399 consensus.
Probab=98.68  E-value=2e-07  Score=70.56  Aligned_cols=141  Identities=23%  Similarity=0.299  Sum_probs=82.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC----CEECHHHHHHHCCCHHHHCCCCCCCEEEEE
Q ss_conf             3647799989768999999999808997399997867789864027----403336788867872641488543224366
Q gi|254781024|r   13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG----AIIDPIGIDSLLPRWREDKGHPFHTVVKRD   88 (554)
Q Consensus        13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG----~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d   88 (554)
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~~~~s-s~Y~~l------------~tn~---   66 (448)
T KOG1399           5 MSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVEVVHS-SVYKSL------------RTNL---   66 (448)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCCEEEEECCCCCCEEEECCCCCCCCC-CHHHHH------------HCCC---
T ss_conf             7785489785668889999998779--983699705874545860576565543-243421------------0468---


Q ss_pred             EEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC--EECCCCEEEEEEECCC-CCEEEEEECCCCC
Q ss_conf             999977997677365435654467882688888989999999987495--3306822434776277-6201454124324
Q gi|254781024|r   89 LYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGV--EIYCGFTATEIYYGKK-GEALGILTGEKGK  165 (554)
Q Consensus        89 ~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gv--ei~~g~~v~~i~~~e~-g~vvgv~t~~~G~  165 (554)
T Consensus        67 ------pKe~~~~~dfpf~---~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~--V~~~~~~~  135 (448)
T KOG1399          67 ------PKEMMGYSDFPFP---ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWR--VTTKDNGT  135 (448)
T ss_pred             ------CHHHHCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEE--EEEECCCC
T ss_conf             ------8444257998975---457111788889999999998735834626734657998405677416--89814886


Q ss_pred             CCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf             4346657875630267742578606644
Q gi|254781024|r  166 NYDGTQGKHYIAPMLLLSKYMLVGEGAC  193 (554)
Q Consensus       166 ~k~~~~~~~~~~g~~i~Ak~vI~AdG~~  193 (554)
T Consensus       136 ----------~-~~~~ifd~VvVctGh~  152 (448)
T KOG1399         136 ----------Q-IEEEIFDAVVVCTGHY  152 (448)
T ss_pred             ----------C-EEEEEEEEEEECCCCC
T ss_conf             ----------4-0589963899955676