HHsearch alignment for GI: 254781024 and conserved domain: PRK01747
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed.
Probab=99.33 E-value=2.6e-09 Score=83.63 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=88.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC---CEECHH------HHHHHCC-------C-HHHHC
Q ss_conf 47799989768999999999808997399997867789864027---403336------7888678-------7-26414
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG---AIIDPI------GIDSLLP-------R-WREDK 77 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG---~vl~p~------aL~eL~P-------d-~~e~~ 77 (554)
T Consensus 257 ~~VaVIGAGIAGas~A~~LA~rG--~~VtVlDr~~~~A~g-ASGn~aG~l~P~ls~~~~~~sr~~~~a~~~a~~~~~~l~ 333 (660)
T PRK01747 257 RDAAIIGGGIAGAALALALARRG--WQVTLYEADEAPAQG-ASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDLEA 333 (660)
T ss_pred CCEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 71899893899999999999789--968999479875655-666731267402578997689999999999999999875
Q ss_pred -CCCCCCEEEEEEEEEECCCCC--------------------------EECCCCC--CCCCCCCCCCEEEEHHHHHHHHH
Q ss_conf -885432243669999779976--------------------------7736543--56544678826888889899999
Q gi|254781024|r 78 -GHPFHTVVKRDLYWFLNAQRS--------------------------IQIPHFC--LPDFMDNKEHYIVSLGQVCRWLK 128 (554)
Q Consensus 78 -g~pl~~~v~~d~~~~l~~~~~--------------------------~~~p~~~--~p~~~~~~g~yiv~r~~fd~~L~ 128 (554)
T Consensus 334 ~~~~~~--~~~~Gvl~la~~e~~~~r~~~~~~~~~~~~~~~~l~~~ea~~~~g~~~~~~Gl~~p~~G~-v~P~~l~~aLl 410 (660)
T PRK01747 334 LGVAFD--HDWCGVLQLAWDEKSAEKIAKMLEAGLPAELARALSAEEAEALAGLPVPCGGIFYPQGGW-LCPAELCRALL 410 (660)
T ss_pred CCCCCC--CCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHEECCHHHHHHHHCCCCCCCCEEECCCCE-ECHHHHHHHHH
T ss_conf 468644--146756995498688999999997469943302479999977529987778378258977-56899999999
Q ss_pred HHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf 9998749533068224347762776201454124324434665787563026774257860664432
Q gi|254781024|r 129 NKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 129 ~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
T Consensus 411 ~~a-~~~i~~~~~~~V~~l~~~~~~w~l--~~~---------------~~~~~~Ad~VVlA~G~~s~ 459 (660)
T PRK01747 411 AAA-GQGLTIHFGHEVARLERVDDQWQL--DFA---------------GGVLASAPVVVLANGHDAT 459 (660)
T ss_pred HHC-CCCEEEEECCEEEEEEECCCEEEE--EEC---------------CCCEEECCEEEECCCCCHH
T ss_conf 864-798599927447899974980899--968---------------9928614679990561011