HHsearch alignment for GI: 254781024 and conserved domain: PRK05714
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional.
Probab=99.94 E-value=1.6e-23 Score=182.45 Aligned_cols=324 Identities=14% Similarity=0.078 Sum_probs=179.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC-------CEECHHHHHHH--CCCHHHHCCCCCCC
Q ss_conf 3647799989768999999999808997399997867789864027-------40333678886--78726414885432
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG-------AIIDPIGIDSL--LPRWREDKGHPFHT 83 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG-------~vl~p~aL~eL--~Pd~~e~~g~pl~~ 83 (554)
T Consensus 1 m~~DV~IvGaGpvGl~lAl~L~~~G--~~v~lie~~~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lG~~~~l~-~~~~~ 77 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALEGSG--LEVLLVDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIA-ARRAS 77 (405)
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHH-HHCCC
T ss_conf 9988999990599999999996189--97899958997778776677898425567799899999879816568-73577
Q ss_pred EEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 24366999977997677365435654467882688888989999999987495330682243477627762014541243
Q gi|254781024|r 84 VVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEK 163 (554)
Q Consensus 84 ~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~ 163 (554)
T Consensus 78 p~~~~~v~d~~~~~~~~f~~~---~~~~~~lg~vv~~~~l~~~L~~~l~~~~v~~~~~~~v~~~~~~~~~~~v~l--~-- 150 (405)
T PRK05714 78 PYSDMQVWDGSGTGQIHFSAA---SVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTL--A-- 150 (405)
T ss_pred CEEEEEEECCCCCCEEEECCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEE--C--
T ss_conf 612455205898622764410---147644411232699999999999727988984878999998388079996--7--
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 24434665787563026774257860664432554211224899888898998898888751656678880899504347
Q gi|254781024|r 164 GKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWPL 243 (554)
Q Consensus 164 G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~~ 243 (554)
T Consensus 151 -------------~g~~i~a~llVgADG~~S~vR~~~gi~~~~--~~y~q~al-----v~~v~~~~~~~~~a~q~F---~ 207 (405)
T PRK05714 151 -------------DGRQLRAPLVVAADGANSAVRRLAGCATRE--WDYLHHAI-----VTSVRCSAPHRATAWQRF---T 207 (405)
T ss_pred -------------CCCEEECCEEEECCCCCCHHHHHCCCCCCC--CCCCCEEE-----EEEECCCCCCCCEEEEEE---C
T ss_conf -------------997986388999589985666513567502--35564489-----984113787662579997---6
Q ss_pred CCCCCCCEEEEECCCCE--EEEEEEECCCC--CCC--CCCHHHHHHHHHHCCCHHHHHCCCCEECCCCE-ECCCCCCCCC
Q ss_conf 68766412576647980--59999832666--566--88988999998608004565038826303513-4005421248
Q gi|254781024|r 244 DMNTSGGGFVYHFDDNL--VSIGFVLHLDY--RNP--WISAYEELQRFKTHPDIRIIFTEGERLEYGAR-VISEGGWQSV 316 (554)
Q Consensus 244 ~~~~~gggwiy~~~d~~--~~iG~v~~ld~--~~~--~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~-~ip~gg~~s~ 316 (554)
T Consensus 208 ~~---Gpla~lPl~~~~~~~~~s~vws~~~~~a~~~~~~~~~~~~~~l~~~--~~~~l--g~i~~~~~~~~~pl~~~-~a 279 (405)
T PRK05714 208 DD---GPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERA--FEGRL--GEVLSADPRLCVPLRQR-HA 279 (405)
T ss_pred CC---CCEEEEECCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHCCC--CCEEEECCCEEEEHHHH-HH
T ss_conf 99---9759997457997667999970888999987639999999999987--51113--64488348667436266-76
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCC--CHHHHHHHHH
Q ss_conf 742308879961232331366435226899999999999999874588-653--0367899864
Q gi|254781024|r 317 PKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGK-KHD--DPIEIEDSWR 377 (554)
Q Consensus 317 pk~~~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~-~~~--~l~~Ye~~~~ 377 (554)
T Consensus 280 ~~~~~~rv~LiGDAAH~~hP~aGQGlNlGl~Da~~La~~L~~a~~~g~~~g~~~~L~~Y~~~R~ 343 (405)
T PRK05714 280 KRYVEEGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRM 343 (405)
T ss_pred HHHHCCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 7864267324320553589730340405599999999999999862999666999999999989