HHsearch alignment for GI: 254781024 and conserved domain: PRK05888

>PRK05888 NADH dehydrogenase subunit I; Provisional.
Probab=96.63  E-value=0.003  Score=41.44  Aligned_cols=56  Identities=21%  Similarity=0.344  Sum_probs=44.3

Q ss_pred             CCCHHCCHHHHCCHHHCCCCCEEEEEEECC---CC---EEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             544001735417813213586006889659---97---056651566670475730068888625367
Q gi|254781024|r  482 DLQKKSELRIYSGPSMRYCPAGVYEWHQNN---DE---NNYIIHAQNCIHCKACVIKDPNQNIEWNPP  543 (554)
Q Consensus       482 ~~~~~~~~~~~~~p~~~~cpa~vye~~~~~---~~---~~~~i~~~nc~hcktc~ik~p~~~i~w~~p  543 (554)
T Consensus        58 ekCi~C------~lC~~~CP~~~I~i~~~~~~~g~k~~~~~~Id~~rCifCGlCve~CP~~AI~~t~~  119 (172)
T PRK05888         58 ERCIAC------KLCEAICPANAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPD  119 (172)
T ss_pred             EECCCC------CCHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             403577------65565588776789875089985774577753460578888221088872447886