HHsearch alignment for GI: 254781024 and conserved domain: PRK05888
>PRK05888 NADH dehydrogenase subunit I; Provisional.
Probab=96.63 E-value=0.003 Score=41.44 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=44.3
Q ss_pred CCCHHCCHHHHCCHHHCCCCCEEEEEEECC---CC---EEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 544001735417813213586006889659---97---056651566670475730068888625367
Q gi|254781024|r 482 DLQKKSELRIYSGPSMRYCPAGVYEWHQNN---DE---NNYIIHAQNCIHCKACVIKDPNQNIEWNPP 543 (554)
Q Consensus 482 ~~~~~~~~~~~~~p~~~~cpa~vye~~~~~---~~---~~~~i~~~nc~hcktc~ik~p~~~i~w~~p 543 (554)
T Consensus 58 ekCi~C------~lC~~~CP~~~I~i~~~~~~~g~k~~~~~~Id~~rCifCGlCve~CP~~AI~~t~~ 119 (172)
T PRK05888 58 ERCIAC------KLCEAICPANAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPD 119 (172)
T ss_pred EECCCC------CCHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 403577------65565588776789875089985774577753460578888221088872447886