HHsearch alignment for GI: 254781024 and conserved domain: PRK08020
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed.
Probab=99.94 E-value=8.2e-24 Score=184.40 Aligned_cols=320 Identities=16% Similarity=0.105 Sum_probs=185.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-----CCCCEECHHHHHHH--CCCHH---HHCCCCCCC
Q ss_conf 647799989768999999999808997399997867789864-----02740333678886--78726---414885432
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-----LSGAIIDPIGIDSL--LPRWR---EDKGHPFHT 83 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i-----~sG~vl~p~aL~eL--~Pd~~---e~~g~pl~~ 83 (554)
T Consensus 5 ~~DV~IvG~G~vGl~lAl~La~~G--~~V~viE~~~~~~~~~~~~~d~R~~al~~~s~~~L~~lGvw~~~~~~~~~~~~~ 82 (391)
T PRK08020 5 PTEIAIVGGGMVGGALALGLAQHG--FSVAVIEHAAPAPFVADSQPDVRISAISAASVALLKGLGVWDAVQAMRCHPYRR 82 (391)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEE
T ss_conf 984899993699999999998669--978999489987666557987338987889999999888848778625687148
Q ss_pred EEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 24366999977997677365435654467882688888989999999987-49533068224347762776201454124
Q gi|254781024|r 84 VVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKGEALGILTGE 162 (554)
Q Consensus 84 ~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g~vvgv~t~~ 162 (554)
T Consensus 83 ----~~~~~-~~~~~~~f~~~~~---~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~--- 151 (391)
T PRK08020 83 ----LETWE-WETAHVVFDAAEL---KLPELGYMVENRVLQQALWQALEAHPNVTLRVPASLIALHRHDDGWELELA--- 151 (391)
T ss_pred ----EEEEC-CCCCEEEECHHHC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEC---
T ss_conf ----98612-7885587254432---897540121269999999999983899699958802688974986899948---
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 32443466578756302677425786066443255421122489988889899889888875165667888089950434
Q gi|254781024|r 163 KGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIGWP 242 (554)
Q Consensus 163 ~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~~~~G~~~h~~g~~ 242 (554)
T Consensus 152 --------------~g~~i~a~lvIgADG~~S~vR~~~gi~~~~~~y--~q~a-l----v~~v~~~~~~~~~a~q~f--- 207 (391)
T PRK08020 152 --------------DGETIQAKLVIGADGANSQVRQMAGIGVHAWQY--AQSC-M----LITVECENDPGDSTWQQF--- 207 (391)
T ss_pred --------------CCCEEEECEEEEECCCCCHHHHHCCCCCCCCCC--CCEE-E----EEEECCCCCCCCCEEEEE---
T ss_conf --------------999998379999079970544522788635787--6248-9----998614677776328998---
Q ss_pred CCCCCCCCEEEEECCCCEEEEEEEECCCCCC--CCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCC
Q ss_conf 7687664125766479805999983266656--68898899999860800456503882630351340054212487423
Q gi|254781024|r 243 LDMNTSGGGFVYHFDDNLVSIGFVLHLDYRN--PWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLS 320 (554)
Q Consensus 243 ~~~~~~gggwiy~~~d~~~~iG~v~~ld~~~--~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~ 320 (554)
T Consensus 208 ~~---~Gp~alLPl~~~~~slVw~~~~~~~~~l~~~~~~~~~~~l~~~~--~~~l--g~i~~~~~~~fpl~~~~-a~~~~ 279 (391)
T PRK08020 208 TP---DGPRAFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQAEIAAHF--PSRL--GAVTPLAAGAFPLTRRH-ALQYV 279 (391)
T ss_pred CC---CCCEEEEECCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHH--HHHC--CEEEEEEEEECHHHHHH-HHHHH
T ss_conf 08---99778862589868999947877788765199999999999873--1332--60579753020476533-43640
Q ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-C--CCHHHHHHHHHH
Q ss_conf 088799612323313664352268999999999999998745886-5--303678998642
Q gi|254781024|r 321 FPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK-H--DDPIEIEDSWRQ 378 (554)
Q Consensus 321 ~~g~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~-~--~~l~~Ye~~~~~ 378 (554)
T Consensus 280 ~~rvvLiGDAAH~ihP~aGQGlNlGl~Da~~La~~L~~~~~~~~~~g~~~~L~~Y~~~R~~ 340 (391)
T PRK08020 280 QPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRYQRRRMA 340 (391)
T ss_pred CCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 5988886142314895423414256999999999999998608996609999999999899