HHsearch alignment for GI: 254781024 and conserved domain: PRK08641
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=99.70 E-value=8.4e-13 Score=107.87 Aligned_cols=315 Identities=17% Similarity=0.208 Sum_probs=154.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--CCE---EC-------H--HHHHHH----------
Q ss_conf 64779998976899999999980899739999786778986402--740---33-------3--678886----------
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS--GAI---ID-------P--IGIDSL---------- 69 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~s--G~v---l~-------p--~aL~eL---------- 69 (554)
T Consensus 3 ~~DVlVIGsG~AGl~AAi~a~~~G--~~V~v~~k~~~~~~~S~~a~gGi~aa~~~~~~~Ds~~~h~~Dt~~aG~~l~d~~ 80 (589)
T PRK08641 3 KKKVIVVGGGLAGLMATIKAAEAG--VHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTIYGGDFLANQP 80 (589)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 687899898699999999998759--977999777889883067787799860479999898999999999557878899
Q ss_pred --------CC---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCC---CCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-
Q ss_conf --------78---726414885432243669999779976773654---356544678826888889899999999874-
Q gi|254781024|r 70 --------LP---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHF---CLPDFMDNKEHYIVSLGQVCRWLKNKAEAL- 134 (554)
Q Consensus 70 --------~P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~---~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~- 134 (554)
T Consensus 81 ~v~~l~~~a~~~i~~Le~~Gv~f~r----------~~~g~~~~~~~GGhs~~R~~~~-~~--~tG~~i~~~L~~~~~~~~ 147 (589)
T PRK08641 81 PVKAMCEAAPGIIHLLDRMGVMFNR----------TPEGLLDFRRFGGTLHHRTAFA-GA--TTGQQLLYALDEQVRRYE 147 (589)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEE----------CCCCCEEECCCCCCCCCCCCCC-CC--CCHHHHHHHHHHHHHHCC
T ss_conf 9999999899999999983980225----------7998870012577036745357-88--638999999999998345
Q ss_pred ---CCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf ---95330682243477627762014541243244346657875630267742578606644325542112248998888
Q gi|254781024|r 135 ---GVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQ 211 (554)
Q Consensus 135 ---Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~ 211 (554)
T Consensus 148 ~~~~i~~~~~~~~~~ll~~~~g~v~Gv~~~d~~~----------g~~~~i~AkaVILATGG~g~ly~~t-------TN-~ 209 (589)
T PRK08641 148 VAGLVTKYEGWEFLGAVKDDEGRCRGIVAQNLFT----------MEIESFGADAVIMATGGPGIIFGKS-------TN-S 209 (589)
T ss_pred CCCCEEEEECCEEEEEEECCCCEEEEEEEEECCC----------CEEEEEECCEEEEECCCCCCCCCCC-------CC-C
T ss_conf 6576599974378899982799699999998889----------8099995156999468887554466-------79-9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEE-EEEECCCCC------C-CC-CCCEEEEECCCCE---------------EE-----
Q ss_conf 989988988887516566788808-995043476------8-76-6412576647980---------------59-----
Q gi|254781024|r 212 PQKFGLGIKELWKIKPQYHRRGLA-LHSIGWPLD------M-NT-SGGGFVYHFDDNL---------------VS----- 262 (554)
Q Consensus 212 p~~~~~gvke~~ei~~~~~~~G~~-~h~~g~~~~------~-~~-~gggwiy~~~d~~---------------~~----- 262 (554)
T Consensus 210 ~~~TGdG~amA~raGA~l~dmEfiQfhPT~l~~~~~~~Lisea~RGeGg~ll~~~~g~r~~f~~~~~~~~~~la~Rdvva 289 (589)
T PRK08641 210 TINTGSAASRVYQQGAYYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIAT 289 (589)
T ss_pred CCCCCHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEECCHHHCCCCCEEEECCCCCCCHHHHHCCHHHCCCCCCHHHH
T ss_conf 98751999999984988158461456520544888742355755278977830589961101110260010126401999
Q ss_pred ---------EEE------EECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCC------EECCCCEECCCCCCCC--CCCC
Q ss_conf ---------999------8326665668898899999860800456503882------6303513400542124--8742
Q gi|254781024|r 263 ---------IGF------VLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGE------RLEYGARVISEGGWQS--VPKL 319 (554)
Q Consensus 263 ---------iG~------v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~------~~~yga~~ip~gg~~s--~pk~ 319 (554)
T Consensus 290 rai~~~~~~~~~~~~g~~~v~lD~~--~~~~~~~~~~~~~~~~~~~~~~g~D~~~~pi~V~P~~H-y~mGGi~iD~~~~T 366 (589)
T PRK08641 290 REIFDVCVEQKLGINGENMVYLDLS--HKDPKELDIKLGGIIEIYEKFTGDDPRKVPMKIFPAVH-YSMGGLWVDYDQMT 366 (589)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCE-EECCCEEECCCCCC
T ss_conf 9999999983578788774885411--28989999872558999999709996457614543410-10587678898862
Q ss_pred CCCCEEEECCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3088799612323313664---35226899999999999999874588
Q gi|254781024|r 320 SFPGGSLIGCAAGFVNLLR---IKGSHNAIISGMLAAEKIVERLSNGK 364 (554)
Q Consensus 320 ~~~g~lLvGDAAG~vnP~~---g~GI~~Am~SG~lAAEai~eal~~g~ 364 (554)
T Consensus 367 ~IpGLyAaGE~a~g~HGaNRLggNSLle~~VfG~~Ag~~Aa~~~~~~~ 414 (589)
T PRK08641 367 NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAIRYIKGLG 414 (589)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 368727754445566775544310499999989999999999997468