HHsearch alignment for GI: 254781024 and conserved domain: PRK09078
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=99.73 E-value=5.6e-14 Score=116.01 Aligned_cols=177 Identities=19% Similarity=0.255 Sum_probs=101.9
Q ss_pred CCHHHCCCCHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCE---EC---HH--------
Q ss_conf 96010242001036477999897689999999998089973999978677898640--2740---33---36--------
Q gi|254781024|r 1 MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAI---ID---PI-------- 64 (554)
Q Consensus 1 ~~~~~~~~~re~meyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~--sG~v---l~---p~-------- 64 (554)
T Consensus 3 ~~~~~~~d~----e~DVlVIGsG~AGL~AAi~a~~~G--~~V~li~K~~~~~s~s~~AqGGi~aa~~~~~~Ds~~~h~~D 76 (598)
T PRK09078 3 MSAYKIIDH----KYDVVVVGAGGAGLRATLGMAEAG--LRTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYD 76 (598)
T ss_pred CCCCCCCCC----CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCHHHHCCCCEEECCCCCCCCHHHHHHH
T ss_conf 776665566----379899995699999999998749--90799978899998546541005033378999998999999
Q ss_pred ------------HHHHHC---C---CHHHHCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEE--EHHHHH
Q ss_conf ------------788867---8---72641488543224366999977997677365435654467882688--888989
Q gi|254781024|r 65 ------------GIDSLL---P---RWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIV--SLGQVC 124 (554)
Q Consensus 65 ------------aL~eL~---P---d~~e~~g~pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv--~r~~fd 124 (554)
T Consensus 77 Tl~aG~~l~d~~~v~~l~~~a~~~i~~L~~~Gv~f~r~~--dG~~~~~~~GGhs~~~~~~~~~~R--~~~~~d~tG~~i~ 152 (598)
T PRK09078 77 TVKGSDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTE--EGKIYQRPFGGMTTNYGEGPPAQR--TCAAADRTGHAIL 152 (598)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCEEE--EEEECCCCHHHHH
T ss_conf 998635768899999999989999999998599243289--988612445643201357875047--8850676099999
Q ss_pred HHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHH
Q ss_conf 9999999874953306822434776277620145412432443466578756302677425786066443255
Q gi|254781024|r 125 RWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLT 197 (554)
Q Consensus 125 ~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~la 197 (554)
T Consensus 153 ~~L~~~~~~~~i~~~~~~~~~~li~~~~G~v~Gv~~~~~~---~-------G~~~~i~AkaVILATGG~g~~y 215 (598)
T PRK09078 153 HTLYQQSLKHNAEFFIEYFALDLIMDDEGVCRGVVAWNLD---D-------GTLHRFRAHMVVLATGGYGRAY 215 (598)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEEEECC---C-------CCEEEEEECEEEECCCCCCCCC
T ss_conf 9999999863987999889999998279859999999878---9-------9589997076998878777666