HHsearch alignment for GI: 254781024 and conserved domain: TIGR01292

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=99.38  E-value=4.1e-12  Score=103.07  Aligned_cols=115  Identities=30%  Similarity=0.492  Sum_probs=82.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEEC
Q ss_conf             47799989768999999999808997399997867789864027403336788867872641488543224366999977
Q gi|254781024|r   15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLN   94 (554)
Q Consensus        15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~   94 (554)
T Consensus         1 ~DviIIGaGPAGlTAAIYa~Ra~--l~~l~~eg~~-~G---~aGGql~~T------------------~-----------   45 (321)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARAN--LKTLLIEGME-PG---IAGGQLTTT------------------T-----------   45 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHC--CEEEEEECCC-CC---CCCCCCCCC------------------C-----------
T ss_conf             92899847867888999988746--7278983577-77---455533322------------------0-----------


Q ss_pred             CCCCEECCCCCCCCCCCCCCCE--EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCC---CCEEEEEECCCCCCCCC
Q ss_conf             9976773654356544678826--888889899999999874953306822434776277---62014541243244346
Q gi|254781024|r   95 AQRSIQIPHFCLPDFMDNKEHY--IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKK---GEALGILTGEKGKNYDG  169 (554)
Q Consensus        95 ~~~~~~~p~~~~p~~~~~~g~y--iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~---g~vvgv~t~~~G~~k~~  169 (554)
T Consensus        46 -----~v---------ENYPGf~e~i~G~~L~~~M~~Qa~~fG~~~~~G~~v~~v~~~~~~yE~~~F~~~~~--------  103 (321)
T TIGR01292        46 -----EV---------ENYPGFPEGISGPELMEKMKEQAKKFGAEIIYGEEVIRVDKSDRAYESDPFKVKTG--------  103 (321)
T ss_pred             -----EE---------ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCEEEEEEC--------
T ss_conf             -----65---------13686888766288999999999870673662670568633788436610389717--------


Q ss_pred             CCCCCCCCEEEEEEEEEEEECCCCCH
Q ss_conf             65787563026774257860664432
Q gi|254781024|r  170 TQGKHYIAPMLLLSKYMLVGEGACGS  195 (554)
Q Consensus       170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~  195 (554)
T Consensus       104 ---------~~y~a~avIiAtGa~~r  120 (321)
T TIGR01292       104 ---------KEYTAKAVIIATGAEAR  120 (321)
T ss_pred             ---------CEEEEEEEEEECCCHHH
T ss_conf             ---------56886589991387154