HHsearch alignment for GI: 254781024 and conserved domain: TIGR01350
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=98.79 E-value=7.3e-09 Score=80.47 Aligned_cols=146 Identities=21% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHH---HHHCCCHHHHCCCCCCCEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678---886787264148854322436699
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGI---DSLLPRWREDKGHPFHTVVKRDLY 90 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL---~eL~Pd~~e~~g~pl~~~v~~d~~ 90 (554)
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG--~KValvEK~-~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~----------a~~~ 67 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLG--LKVALVEKE-KLGGTCLNVGCIPTKALLHSAEVYDEIKHK----------AKDL 67 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCC--CEEEEEEEC-CCCCEEECCCCCCCHHHHHHHHHHHHHHHH----------HHHC
T ss_conf 951899877877279999998649--808999803-568748727767547887766789999988----------9867
Q ss_pred EEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 99779976773654356544678826888889899999999874953306822434776277620145412432443466
Q gi|254781024|r 91 WFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGT 170 (554)
Q Consensus 91 ~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~ 170 (554)
T Consensus 68 Gi~~~~-~v~~d~~----~~~~rK~~VV~~--L~~Gv~~LlkknKv~v~~G~a~~-----~~~~~v~V~~~~-------- 127 (481)
T TIGR01350 68 GIEVEN-NVSVDWE----KMQERKNKVVKK--LVGGVKGLLKKNKVTVIKGEAKF-----LDPNTVSVTGEN-------- 127 (481)
T ss_pred CEEECC-EEEECHH----HHHHHHHHHHHH--HHHHHHHHHHHCCEEEEEEEEEE-----ECCCEEEEECCC--------
T ss_conf 803367-1267589----999998898754--24678988630680599999999-----858589983565--------
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCHH
Q ss_conf 57875630267742578606644325
Q gi|254781024|r 171 QGKHYIAPMLLLSKYMLVGEGACGSL 196 (554)
Q Consensus 171 ~~~~~~~g~~i~Ak~vI~AdG~~s~l 196 (554)
T Consensus 128 ----~~~~~~~~~k~~iiATGS~P~~ 149 (481)
T TIGR01350 128 ----GEEEETLEAKNIIIATGSRPRE 149 (481)
T ss_pred ----CCEEEEEEEEEEEEECCCCCCC
T ss_conf ----5311478740379933860343