HHsearch alignment for GI: 254781024 and conserved domain: TIGR01373
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.28 E-value=5.4e-11 Score=95.30 Aligned_cols=179 Identities=21% Similarity=0.243 Sum_probs=105.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCC-------CCEECH-------HHHHHHCCCHHHHC
Q ss_conf 3647799989768999999999808997-39999786778986402-------740333-------67888678726414
Q gi|254781024|r 13 FEYDVVIIGAGPAGLAAAIRCKQINPHL-SVVILEKSAEVGAHILS-------GAIIDP-------IGIDSLLPRWREDK 77 (554)
Q Consensus 13 meyDVvIVGaGPAG~saA~~La~~g~~l-~VlvlEK~~~pG~~i~s-------G~vl~p-------~aL~eL~Pd~~e~~ 77 (554)
T Consensus 29 ~~YDviIvGgGGHGLATAYYLA~~-hGItnVAVlEKgw-lGgGN~gRNTTivRSNYl~p~s~~~Ye~a~k-LweGLs~dL 105 (407)
T TIGR01373 29 PEYDVIIVGGGGHGLATAYYLAKE-HGITNVAVLEKGW-LGGGNTGRNTTIVRSNYLYPESAELYEHAMK-LWEGLSQDL 105 (407)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHH-CCCCEEEEEEECC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHH-HHHCHHHHC
T ss_conf 854678886886068999998864-6940689985062-1688664342146541026452237888988-861200120
Q ss_pred ---------C-----------CCCCCEEEEEEEE-----EECCCC-CEECCCCCCC--CCCCCCCCEE-----EEHHHHH
Q ss_conf ---------8-----------8543224366999-----977997-6773654356--5446788268-----8888989
Q gi|254781024|r 78 ---------G-----------HPFHTVVKRDLYW-----FLNAQR-SIQIPHFCLP--DFMDNKEHYI-----VSLGQVC 124 (554)
Q Consensus 78 ---------g-----------~pl~~~v~~d~~~-----~l~~~~-~~~~p~~~~p--~~~~~~g~yi-----v~r~~fd 124 (554)
T Consensus 106 NYNvM~SqRG~~nL~H~~~~~~~~~R~v~A~r~~GvDaELl~~~~v~~~~P~ld~s~daRfPv~Gg~~QrRgGtaRHDAV 185 (407)
T TIGR01373 106 NYNVMFSQRGVLNLAHSTADMDDYARRVNAMRLNGVDAELLSPEQVKRLIPILDFSKDARFPVVGGLLQRRGGTARHDAV 185 (407)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCEEEHHH
T ss_conf 20011213323432188878764314100111036463206878999618811288888863005400137871021012
Q ss_pred HH-HHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 99-99999874953306822434776277620145412432443466578756302677425786066443255421122
Q gi|254781024|r 125 RW-LKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIER 203 (554)
Q Consensus 125 ~~-L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~ 203 (554)
T Consensus 186 AWGYARgAd~~GVdiIqncEvTg~~~~~~grv~GV~T~RG~I---------------gA~kvgva~AG~ss~~a~~AG~r 250 (407)
T TIGR01373 186 AWGYARGADARGVDIIQNCEVTGFIRRENGRVIGVETTRGFI---------------GAKKVGVAVAGNSSVVAELAGFR 250 (407)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCEEEECCCEEEEEECCCCCC---------------CCEEEEEEEECCHHHHHHHCCCC
T ss_conf 221464230058403222320231650687588654487410---------------10378888717758989763742
Q ss_pred CCCCCC
Q ss_conf 489988
Q gi|254781024|r 204 YSLMDG 209 (554)
Q Consensus 204 ~~l~~~ 209 (554)
T Consensus 251 lPieSh 256 (407)
T TIGR01373 251 LPIESH 256 (407)
T ss_pred CCHHHH
T ss_conf 662110