HHsearch alignment for GI: 254781024 and conserved domain: TIGR01989

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=99.69  E-value=4.5e-15  Score=123.68  Aligned_cols=348  Identities=15%  Similarity=0.146  Sum_probs=188.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCCCEEEEEECCCCCCCC-----CCCC------CEECHHHHHHH--CCCHHHHCCC
Q ss_conf             4779998976899999999980--899739999786778986-----4027------40333678886--7872641488
Q gi|254781024|r   15 YDVVIIGAGPAGLAAAIRCKQI--NPHLSVVILEKSAEVGAH-----ILSG------AIIDPIGIDSL--LPRWREDKGH   79 (554)
Q Consensus        15 yDVvIVGaGPAG~saA~~La~~--g~~l~VlvlEK~~~pG~~-----i~sG------~vl~p~aL~eL--~Pd~~e~~g~   79 (554)
T Consensus         1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d~p~l~s~~y~~~~~~y~NRvssitp~si~~f~~~GAWd~i~~~   80 (481)
T TIGR01989         1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVDAPKLKSRKYEKPDGPYSNRVSSITPASIEFFKKIGAWDHIESD   80 (481)
T ss_pred             CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCHHHHHHHH
T ss_conf             92898888578999999973187320230678652348234211015788887763585375079998534835898851


Q ss_pred             CCCCEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC---CEECCCCEEEEEEECCC----
Q ss_conf             54322436699997799767736543565446788268888898999999998749---53306822434776277----
Q gi|254781024|r   80 PFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALG---VEIYCGFTATEIYYGKK----  152 (554)
Q Consensus        80 pl~~~v~~d~~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~G---vei~~g~~v~~i~~~e~----  152 (554)
T Consensus        81 R~-~~f~~~~V~D~~s~a~i~f~~~----~~~e~~aciiEN~~i~~sL~~~l~~~~~~~~~~~~~~~~~~~~ip~~srqa  155 (481)
T TIGR01989        81 RI-KPFKRMQVWDGCSKALIEFDRD----NVKEDMACIIENDVIQASLYNRLKEYKSDNVKVLYKAKLISVTIPKKSRQA  155 (481)
T ss_pred             HH-HHHCCEEEEEECCCEEEEECCC----CCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEECCHHCEEEECCCCCCCCC
T ss_conf             14-2017189887247403444236----888643011356899999999998725882331001010231155101457


Q ss_pred             CCEEEEEECCC--CCCCCCCCCCCCCCE---------------EEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             62014541243--244346657875630---------------2677425786066443255421122489988889899
Q gi|254781024|r  153 GEALGILTGEK--GKNYDGTQGKHYIAP---------------MLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKF  215 (554)
Q Consensus       153 g~vvgv~t~~~--G~~k~~~~~~~~~~g---------------~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~  215 (554)
T Consensus       156 PtreaissG~p~~~~~~~~~~~i~L~dGdvietsllvrinflk~~l~~~LliGADG~NS~VR~~~~i~~-~gwNY~--~-  231 (481)
T TIGR01989       156 PTREAISSGSPFEENDNSNWVHITLSDGDVIETSLLVRINFLKETLKTKLLIGADGVNSKVRKAANIDV-TGWNYD--Q-  231 (481)
T ss_pred             CCCHHHCCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCEEECCCC-CCCCCC--C-
T ss_conf             530121168887655667642577068866314555565554320003357743278772233623675-453357--6-


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCC------------------------C
Q ss_conf             8898888751656678880899504347687664125766479805999983266------------------------6
Q gi|254781024|r  216 GLGIKELWKIKPQYHRRGLALHSIGWPLDMNTSGGGFVYHFDDNLVSIGFVLHLD------------------------Y  271 (554)
Q Consensus       216 ~~gvke~~ei~~~~~~~G~~~h~~g~~~~~~~~gggwiy~~~d~~~~iG~v~~ld------------------------~  271 (554)
T Consensus       232 -~avVatl~l~~~~~~n~~AWQR---FLP~GP--iAlL-Pl~D~~s~lVWSts~e~a~~L~~Lp~e~FV~~lN~Af~l~~  304 (481)
T TIGR01989       232 -SAVVATLKLEEDATENEVAWQR---FLPTGP--IALL-PLSDNLSTLVWSTSPEEAKRLKSLPPEEFVDALNAAFRLDY  304 (481)
T ss_pred             -CEEEEEEEECCCCCCCCEEEEC---CCCCCC--EEEC-CCCCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             -4268888505678888735413---378766--2445-76653365412167799998425883578999998741788


Q ss_pred             CC-CCC---------CHHHHHHHHHHC-CCHHHHHCCCCEEC--C----------CCEECCCCCCCCCCCCCCCCEEEEC
Q ss_conf             56-688---------988999998608-00456503882630--3----------5134005421248742308879961
Q gi|254781024|r  272 RN-PWI---------SAYEELQRFKTH-PDIRIIFTEGERLE--Y----------GARVISEGGWQSVPKLSFPGGSLIG  328 (554)
Q Consensus       272 ~~-~~~---------~~~~~lq~fk~h-p~i~~~l~gg~~~~--y----------ga~~ip~gg~~s~pk~~~~g~lLvG  328 (554)
T Consensus       305 ~d~~~~~~~d~~Gsm~~~~L~~~~~~~~~~~yatL~~~~~~~~~~PP~v~~v~~ksRa~FPL~L~H-a~~Yv~~R~ALvG  383 (481)
T TIGR01989       305 SDLNYLYLVDEAGSMDVEKLNEDIGFRTEEIYATLKVGRKSEVQVPPRVIGVVDKSRAAFPLGLGH-ADEYVTERVALVG  383 (481)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEECCCEEEEEECCCCCCCCCCCCC-CHHHHCCCCCEEC
T ss_conf             888731100022562089999741353014201110353134016885899823750368742122-0777528962622


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CC--CCHHHHHHHHHHH
Q ss_conf             232331366435226899999999999999874588-65--3036789986420
Q gi|254781024|r  329 CAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGK-KH--DDPIEIEDSWRQT  379 (554)
Q Consensus       329 DAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~-~~--~~l~~Ye~~~~~s  379 (554)
T Consensus       384 DAAH~vHPLAGQGvNlG~~Dv~~L~~~L~~a~~~G~DiGs~~~L~~Y~~~r~~~  437 (481)
T TIGR01989       384 DAAHRVHPLAGQGVNLGFSDVESLVKALSKAVKEGADIGSVSSLKPYERERQAK  437 (481)
T ss_pred             CHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf             301067873345101117899999999999986055524145205889878662