HHsearch alignment for GI: 254781024 and conserved domain: TIGR02028
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=100.00 E-value=3.9e-37 Score=277.02 Aligned_cols=322 Identities=21% Similarity=0.258 Sum_probs=236.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH-CCCHHHHCCCCCCCEEEEEEEEEECC
Q ss_conf 79998976899999999980899739999786778986402740333678886-78726414885432243669999779
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL-LPRWREDKGHPFHTVVKRDLYWFLNA 95 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL-~Pd~~e~~g~pl~~~v~~d~~~~l~~ 95 (554)
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG--~~~~L~ER~~~-~aK-PCGGAIPLCMv~EF~lP~--d----~iDRRV~kMk~--~SP 70 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAG--IQTFLLERKLD-NAK-PCGGAIPLCMVDEFDLPR--D----IIDRRVTKMKM--ISP 70 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCC--CEEEEEEECCC-CCC-CCCCCCCCCCCCHHCCCH--H----HHHCCCCEEEE--ECC
T ss_conf 889748974168999998503--10463320567-887-788864412010103786--6----75121102242--164
Q ss_pred CC-CEECCCCCCCCCCCCCCCE--EEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECC-CCCEEEEEECCCCCCCCCCC
Q ss_conf 97-6773654356544678826--88888989999999987495330682243477627-76201454124324434665
Q gi|254781024|r 96 QR-SIQIPHFCLPDFMDNKEHY--IVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGK-KGEALGILTGEKGKNYDGTQ 171 (554)
Q Consensus 96 ~~-~~~~p~~~~p~~~~~~g~y--iv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e-~g~vvgv~t~~~G~~k~~~~ 171 (554)
T Consensus 71 SN~~~d~gr-----~L~~-~~yIgM~RREVLDsflR~RA~~~GA~li~Glv~~l~~P~~p~~~PY~lHY~~----~Dg~- 139 (401)
T TIGR02028 71 SNIAVDIGR-----TLKE-HEYIGMVRREVLDSFLRERAADAGATLINGLVLKLELPADPADDPYTLHYVE----EDGK- 139 (401)
T ss_pred CCHHHHHHC-----CCCC-CCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCEEEEEE----ECCC-
T ss_conf 101332000-----2788-7612514578888999999986488141444576317788877871789870----0687-
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCCCCCCCCC
Q ss_conf 7875630267742578606644325542112248998888989988988887516566--78880899504347687664
Q gi|254781024|r 172 GKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQY--HRRGLALHSIGWPLDMNTSG 249 (554)
Q Consensus 172 ~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei~~~~--~~~G~~~h~~g~~~~~~~~g 249 (554)
T Consensus 140 ~G~~g~~~~lEVD~VIGADGANSRvAk~idA--------GDY~~AIAfQERIRlPde~MaYY~dLAEMYVGdDVSP--DF 209 (401)
T TIGR02028 140 GGASGTKKTLEVDAVIGADGANSRVAKEIDA--------GDYDYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSP--DF 209 (401)
T ss_pred CCCCCCCEEEEEEEEECCCCCCCHHHCCCCC--------CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC--CC
T ss_conf 5876454068887787078752023111378--------8523444433203687011234664333200788686--63
Q ss_pred CEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCEEEECC
Q ss_conf 12576647980599998326665668898899999860800456503882630351340054212487423088799612
Q gi|254781024|r 250 GGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPGGSLIGC 329 (554)
Q Consensus 250 ggwiy~~~d~~~~iG~v~~ld~~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g~lLvGD 329 (554)
T Consensus 210 YgWVFPK~DH-VAVGTGTvk----~~K~~Ik~lQ~g~R~R-A~~K~~GG~iirVEAHPIPEHP---RPRRv~~RVALVGD 280 (401)
T TIGR02028 210 YGWVFPKCDH-VAVGTGTVK----AAKDEIKKLQSGIRAR-AADKVAGGKIIRVEAHPIPEHP---RPRRVVGRVALVGD 280 (401)
T ss_pred CCCCCCCCCE-EEECCCEEE----ECCHHHHHHHHHHHHH-HHHHHCCCEEEEEECCCCCCCC---CCCEECCEEEEEEC
T ss_conf 4010677364-773353145----0507889998888787-8866048808998134775424---88500120577633
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHH
Q ss_conf 3233136643522689999999999999987458865---30367899864204
Q gi|254781024|r 330 AAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKH---DDPIEIEDSWRQTQ 380 (554)
Q Consensus 330 AAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~---~~l~~Ye~~~~~s~ 380 (554)
T Consensus 281 AAG~VTkcSGEGIYFAAkSgR~Ca~a~~~~~~~g~~~~~~g~~~~YL~rWD~~y 334 (401)
T TIGR02028 281 AAGYVTKCSGEGIYFAAKSGRLCAEAIVEESRLGKKVTEEGDLKKYLKRWDKEY 334 (401)
T ss_pred CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 667535003650546654445688998864303640134678899988765531