HHsearch alignment for GI: 254781024 and conserved domain: TIGR02731
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=94.43 E-value=0.051 Score=32.91 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 79998976899999999980899739999786778986
Q gi|254781024|r 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54 (554)
Q Consensus 17 VvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~ 54 (554)
T Consensus 2 v~~aGaGlaGl~~akyl~daGh--~Pi~~e~~~vlGG~ 37 (454)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAGH--TPIVLEARDVLGGK 37 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCC--CCEEEECHHHCCCC
T ss_conf 5772274556778878763589--62686321003550