HHsearch alignment for GI: 254781024 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.46 E-value=1.4e-12 Score=106.32 Aligned_cols=112 Identities=23% Similarity=0.368 Sum_probs=78.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886787264148854322436699997
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFL 93 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l 93 (554)
T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~g--l~t~vi~~~--~GGq-----v~~t~~I---------------e----------- 256 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAER--IGGQ-----VKDTVGI---------------E----------- 256 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECC--CCCC-----CEECCCE---------------E-----------
T ss_conf 888899896789999999999779--976999248--7753-----1303460---------------0-----------
Q ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 79976773654356544678826888889899999999874953306822434776277620145412432443466578
Q gi|254781024|r 94 NAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGK 173 (554)
Q Consensus 94 ~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~ 173 (554)
T Consensus 257 ------NypG------~~-----~i~G~eL~~~~~~qa~~~gv~~~~~~~v~~i~~~~~--~~~v~~~~----------- 306 (515)
T TIGR03140 257 ------NLIS------VP-----YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDG--LIVVTLES----------- 306 (515)
T ss_pred ------ECCC------CC-----CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCC--CEEEEECC-----------
T ss_conf ------4489------87-----775799999999999974968991336999972798--18999879-----------
Q ss_pred CCCCEEEEEEEEEEEECCCCC
Q ss_conf 756302677425786066443
Q gi|254781024|r 174 HYIAPMLLLSKYMLVGEGACG 194 (554)
Q Consensus 174 ~~~~g~~i~Ak~vI~AdG~~s 194 (554)
T Consensus 307 ----g~~~~aktVIiATGa~~ 323 (515)
T TIGR03140 307 ----GEVLKAKSVIVATGARW 323 (515)
T ss_pred ----CCEEEECEEEECCCCCC
T ss_conf ----98999397999569873