HHsearch alignment for GI: 254781024 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.44 E-value=2.6e-12 Score=104.43 Aligned_cols=111 Identities=25% Similarity=0.399 Sum_probs=75.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHCCCHHHHCCCCCCCEEEEEEEEEEC
Q ss_conf 47799989768999999999808997399997867789864027403336788867872641488543224366999977
Q gi|254781024|r 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLN 94 (554)
Q Consensus 15 yDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL~Pd~~e~~g~pl~~~v~~d~~~~l~ 94 (554)
T Consensus 5 YDvIIIGgGPAGlsAAIYaaRag--lktlvIEk~~-~GGqi-----~~t~-------------------~---------- 47 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKDD-FGGQI-----TITS-------------------E---------- 47 (555)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC-CCCCC-----EECC-------------------C----------
T ss_conf 72999995688999999999789--9679996688-68655-----6368-------------------5----------
Q ss_pred CCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99767736543565446788268888898999999998749533068224347762776201454124324434665787
Q gi|254781024|r 95 AQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKH 174 (554)
Q Consensus 95 ~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~~~~~~ 174 (554)
T Consensus 48 ---VeNYPG------~~-----~isG~eL~~~m~~qA~~~Gve~~~~~-V~~i~~--~g~~k~V~t~~------------ 98 (555)
T TIGR03143 48 ---VVNYPG------IL-----NTTGPELMQEMRQQAQDFGVKFLQAE-VLDVDF--DGDIKTIKTAR------------ 98 (555)
T ss_pred ---EEECCC------CC-----CCCHHHHHHHHHHHHHHCCCEEEEEE-EEEEEC--CCCCEEEEECC------------
T ss_conf ---687888------77-----98689999999999997796999656-999973--79958999889------------
Q ss_pred CCCEEEEEEEEEEEECCCCCH
Q ss_conf 563026774257860664432
Q gi|254781024|r 175 YIAPMLLLSKYMLVGEGACGS 195 (554)
Q Consensus 175 ~~~g~~i~Ak~vI~AdG~~s~ 195 (554)
T Consensus 99 ----g~~~ak~VIIATGa~pr 115 (555)
T TIGR03143 99 ----GDYKTLAVLIATGASPR 115 (555)
T ss_pred ----CEEEECEEEECCCCCCC
T ss_conf ----78996979999999714