HHsearch alignment for GI: 254781024 and conserved domain: TIGR03294
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=94.28 E-value=0.02 Score=35.69 Aligned_cols=54 Identities=22% Similarity=0.480 Sum_probs=42.6
Q ss_pred CCEE--EEECCCCCHHCCHHHHCCHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 6217--961755440017354178132135860068896599705665156667047573006888
Q gi|254781024|r 473 PMHL--LIKDKDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQ 536 (554)
Q Consensus 473 p~Hl--~~~~~~~~~~~~~~~~~~p~~~~cpa~vye~~~~~~~~~~~i~~~nc~hcktc~ik~p~~ 536 (554)
T Consensus 163 gcdl~~~vin~~LC~GC------g~Ca~~Cp~~AI~~~~----gkp~i~~~~Ci~CG~C~~~CPr~ 218 (228)
T TIGR03294 163 GCDLMTKVVNQGLCMGC------GTCAAACPTRAIEMED----GRPNVNRDRCIKCGACYVQCPRA 218 (228)
T ss_pred CCHHHHHCCCCCCCCCC------HHHHHHCCCCCCEEEC----CCEEECHHHCCCCCCCCCCCCCC
T ss_conf 75037752463216781------5778548857625653----83677632277677441219764