HHsearch alignment for GI: 254781024 and conserved domain: pfam01494
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=99.97 E-value=1.2e-27 Score=210.93 Aligned_cols=330 Identities=18% Similarity=0.153 Sum_probs=186.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHH--CCCHHHH--CCCCCCCEEEEEE
Q ss_conf 64779998976899999999980899739999786778986402740333678886--7872641--4885432243669
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSL--LPRWRED--KGHPFHTVVKRDL 89 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~i~sG~vl~p~aL~eL--~Pd~~e~--~g~pl~~~v~~d~ 89 (554)
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~G--i~v~V~Er~~~~~~~-g~g~~l~p~~~~~L~~lGl~~~~~~~~~~~----~~~~ 73 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAG--VRVVLVERHATTSVL-PRAGGLNQRTMELLRQAGLEDRILAEGAPH----EGMG 73 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCC-CEEEEECHHHHHHHHHCCCHHHHHHCCCCC----CEEE
T ss_conf 997899992889999999998779--989999289998878-779998989999999879868998506875----1059
Q ss_pred EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 99977997677365435654467882688888989999999987495330682243477627762014541243244346
Q gi|254781024|r 90 YWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDG 169 (554)
Q Consensus 90 ~~~l~~~~~~~~p~~~~p~~~~~~g~yiv~r~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~e~g~vvgv~t~~~G~~k~~ 169 (554)
T Consensus 74 ~~~~~~~~-~~~~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~----- 144 (349)
T pfam01494 74 LAFYNTSR-RRADLD---FLTSPPRVTVYPQTELEPILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDG----- 144 (349)
T ss_pred EEECCCCC-CEEECC---CCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCC-----
T ss_conf 99837864-222014---556776268862999999999999857998996617877520599437999845899-----
Q ss_pred CCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 65787563026774257860664432554211224899888898998898888751-65667888089950434768766
Q gi|254781024|r 170 TQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKI-KPQYHRRGLALHSIGWPLDMNTS 248 (554)
Q Consensus 170 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lak~l~~~~~l~~~~~p~~~~~gvke~~ei-~~~~~~~G~~~h~~g~~~~~~~~ 248 (554)
T Consensus 145 -------~~~~i~adlvIgADG~~S~vR~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 210 (349)
T pfam01494 145 -------EEYTVRAKYLVGCDGGRSPVRKQLGIEFEGFEG---VPFG-SLDVLFDAPDLSDPVERAFVHYLIY---APHS 210 (349)
T ss_pred -------CEEEEEEEEEECCCCCCCHHHHHCCCCCCCCCC---CEEE-EEEEEECCCCCCCCCCCCCEEEEEE---CCCC
T ss_conf -------558999768841577764899975999755545---4389-9999952578421235674289997---1899
Q ss_pred CCEEEEECCCCE-EEEEEEECCCC----CCCCCCHHHHHHHHHHCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCC
Q ss_conf 412576647980-59999832666----5668898899999860800456503882630351340054212487423088
Q gi|254781024|r 249 GGGFVYHFDDNL-VSIGFVLHLDY----RNPWISAYEELQRFKTHPDIRIIFTEGERLEYGARVISEGGWQSVPKLSFPG 323 (554)
Q Consensus 249 gggwiy~~~d~~-~~iG~v~~ld~----~~~~~~~~~~lq~fk~hp~i~~~l~gg~~~~yga~~ip~gg~~s~pk~~~~g 323 (554)
T Consensus 211 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~-~~~~~~~gr 285 (349)
T pfam01494 211 RGFMVGPWRSAGRSRYYVQVPWDPEVEERPEEFTDEEAKQRLRSAVG--IDLADVEIL--WKSIWGVRSR-VATRYRKGR 285 (349)
T ss_pred CEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCEE--EEEECCCCCE-ECCCCCCCC
T ss_conf 86999972799827999997078542225443899999999998648--654555635--5786200356-735511598
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 7996123233136643522689999999999999987458865303678998642
Q gi|254781024|r 324 GSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHDDPIEIEDSWRQ 378 (554)
Q Consensus 324 ~lLvGDAAG~vnP~~g~GI~~Am~SG~lAAEai~eal~~g~~~~~l~~Ye~~~~~ 378 (554)
T Consensus 286 v~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~~g~~~~~~L~~Ye~~R~~ 340 (349)
T pfam01494 286 VFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLAAVLRGTAGEALLDTYEAERRP 340 (349)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9999861023886354677589999999999999997499988999999999999