HHsearch alignment for GI: 254781024 and conserved domain: pfam06039
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=97.97 E-value=6.9e-05 Score=52.86 Aligned_cols=173 Identities=23% Similarity=0.359 Sum_probs=94.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-----C-----CCCCE------------EC-HHH--HHH
Q ss_conf 64779998976899999999980899739999786778986-----4-----02740------------33-367--888
Q gi|254781024|r 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH-----I-----LSGAI------------ID-PIG--IDS 68 (554)
Q Consensus 14 eyDVvIVGaGPAG~saA~~La~~g~~l~VlvlEK~~~pG~~-----i-----~sG~v------------l~-p~a--L~e 68 (554)
T Consensus 4 ~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~~wNNAgTgHaa~cElNYTpe~~dg~i~i~KA~~Ine 83 (489)
T pfam06039 4 KVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSALCELNYTPEGADGSIDISKAVKINE 83 (489)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 10299999628899999999975998748999814752555078866552100021341488765688442799999999
Q ss_pred HCC---C-H--HHHCCC---C--CCCEEEEEEEE-------EEC-------C-----CCCEE-----CCCCCCCCCCCC-
Q ss_conf 678---7-2--641488---5--43224366999-------977-------9-----97677-----365435654467-
Q gi|254781024|r 69 LLP---R-W--REDKGH---P--FHTVVKRDLYW-------FLN-------A-----QRSIQ-----IPHFCLPDFMDN- 112 (554)
Q Consensus 69 L~P---d-~--~e~~g~---p--l~~~v~~d~~~-------~l~-------~-----~~~~~-----~p~~~~p~~~~~- 112 (554)
T Consensus 84 qFe~Srqfws~lv~~g~l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~~~lF~~Me~seD~~~i~~-w~PLv~~gR 162 (489)
T pfam06039 84 QFQISRQFWAYLVKEGVLSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQNPLFEGMEYSEDPEKIKE-WVPLMMEGR 162 (489)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHH-HCCCCCCCC
T ss_conf 9999999999998758989857850568815898776988999999998505878677784479899986-448003797
Q ss_pred -----------CCCEEEEHHHHHHHHHHHHHH-CCCEECCCCEEEEEEECCCC-CEEEEEECCCCCCCCCCCCCCCCCEE
Q ss_conf -----------882688888989999999987-49533068224347762776-20145412432443466578756302
Q gi|254781024|r 113 -----------KEHYIVSLGQVCRWLKNKAEA-LGVEIYCGFTATEIYYGKKG-EALGILTGEKGKNYDGTQGKHYIAPM 179 (554)
Q Consensus 113 -----------~g~yiv~r~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~e~g-~vvgv~t~~~G~~k~~~~~~~~~~g~ 179 (554)
T Consensus 163 ~~~e~vAat~~~~GTdVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~v~v~~~~~~------------~~~ 230 (489)
T pfam06039 163 DPDEPIAATRIDEGTDVNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWTVTVKDLNTG------------DKR 230 (489)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCC------------CEE
T ss_conf 97885579944887401189999999999851898289927885345888999879999865789------------748
Q ss_pred EEEEEEEEEECCCCCH-HHHH
Q ss_conf 6774257860664432-5542
Q gi|254781024|r 180 LLLSKYMLVGEGACGS-LTRQ 199 (554)
Q Consensus 180 ~i~Ak~vI~AdG~~s~-lak~ 199 (554)
T Consensus 231 ~~~A~fVfvgAGG~sL~LlQk 251 (489)
T pfam06039 231 TIKAKFVFIGAGGGALPLLQK 251 (489)
T ss_pred EEEECEEEECCCHHHHHHHHH
T ss_conf 998267998887577899998