RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781024|ref|YP_003065437.1| electron transfer
flavoprotein-ubiquinone oxidoreductase [Candidatus Liberibacter
asiaticus str. psy62]
(554 letters)
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 95.8 bits (238), Expect = 3e-20
Identities = 88/355 (24%), Positives = 155/355 (43%), Gaps = 36/355 (10%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRW 73
++D +++GAG AG AA+ + L V+++E+ G ++G + +++++P +
Sbjct: 5 KFDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGF 62
Query: 74 REDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEA 133
P V R+ FL + ++ + + Y V ++ WL +AE
Sbjct: 63 AASA--PVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ 120
Query: 134 LGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLVGEGAC 193
G + G + +G G Q I L + +++ +G
Sbjct: 121 AGAQFIPGVRVDALV-------------REGNKVTGVQAGDDI----LEANVVILADGVN 163
Query: 194 GSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQY--HRRGLALHS-IGWPLDMNTS-- 248
L R L ++ P + +G+KE+ + P+ R + W + S
Sbjct: 164 SMLGRSL----GMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDG 219
Query: 249 --GGGFVYHFDDNLVSIGFVLHL-DYRNPWISAYEELQRFKTHPDIRIIFTEGERLEYGA 305
GGGF+Y D+ +S+G V L D + S + L+ FK HP IR + + G+ LEY A
Sbjct: 220 LMGGGFLYTNKDS-ISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSA 278
Query: 306 RVISEGGWQSVPKLSFPGGSLIGCAAGF-VNL-LRIKGSHNAIISGMLAAEKIVE 358
++ EGG VP+L G ++G AAGF +NL ++G AI S AA ++
Sbjct: 279 HMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIA 333
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 77.6 bits (191), Expect = 8e-15
Identities = 92/381 (24%), Positives = 175/381 (45%), Gaps = 43/381 (11%)
Query: 9 NKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDS 68
++D+F D +I+GAG AG AA+ + V+++E+ GA ++G + ++
Sbjct: 2 SEDIF--DAIIVGAGLAGSVAALVLAREGAQ--VLVIERGNSAGAKNVTGGRLYAHSLEH 57
Query: 69 LLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLK 128
++P + + P ++ + F+ + ++ + + + ++ Y V + WL
Sbjct: 58 IIPGFADSA--PVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLM 115
Query: 129 NKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPMLLLSKYMLV 188
+AE G ++ G + + G+ +G+ DG ++ +K +++
Sbjct: 116 EQAEEAGAQLITGIRVDNLVQ-RDGKVVGV-------EADGD---------VIEAKTVIL 158
Query: 189 GEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWK-----IKPQYHRR---GLALHSIG 240
+G S+ L E+ + +P +G+KEL + I+ ++ + G A G
Sbjct: 159 ADGV-NSI---LAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAG 214
Query: 241 WPLDMNTSGGGFVYHFDDNLVSIGFVLHLDY-RNPWISAYEELQRFKTHPDIRIIFTEGE 299
P D GGGF+Y ++N +S+G V L + + S + L+ FK HP + + G+
Sbjct: 215 SPTD-GLMGGGFLYT-NENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGK 272
Query: 300 RLEYGARVISEGGWQSVPKLSFPGGSLIGCAAGF-VNL-LRIKGSHNAIISGMLAAEKIV 357
+EY A V+ E G +P+L G + G AAG +NL I+G AI +G AA+ +
Sbjct: 273 LVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTV- 331
Query: 358 ERLSNGKKHDDPIEIEDSWRQ 378
LS K D + +RQ
Sbjct: 332 --LSAMKSDDFSKQKLAEYRQ 350
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 52.4 bits (126), Expect = 3e-07
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-LSGAIIDPIGIDSL 69
E D+++IG G AG AAI+ K+ NP L V++LEK A++ SGAI +G+D L
Sbjct: 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEK-----ANVKRSGAI--SMGMDGL 58
>gnl|CDD|161797 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae.
Length = 400
Score = 51.1 bits (123), Expect = 7e-07
Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 19/155 (12%)
Query: 18 VIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SGA---IIDPIGIDSLLPRW 73
+IIG G AGL AAI + LSV++LEK+ ++G +L SG + +
Sbjct: 1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAY 58
Query: 74 REDKGHPFHTVVKR-DLYWFLNAQRSIQIPHFCLPDF----MDNKEHYIVSLGQVCRWLK 128
G + + R ++ S+ + D + ++ L
Sbjct: 59 YPRNGKFLRSALSRFSNKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDA------LL 112
Query: 129 NKAEALGVEIYCGFTATEIYYGKKGEALGILTGEK 163
N+ + LGVEI I K G+ T
Sbjct: 113 NELKELGVEILTNSKVKSIK--KDDNGFGVETSGG 145
>gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates.
Length = 295
Score = 49.6 bits (119), Expect = 2e-06
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 16/149 (10%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWR 74
YDVV++GAGPAG +AA R L V++LEK + + G + P ++ L
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKG--LRVLLLEKKSFPR-YKPCGGALSPRVLEEL----- 52
Query: 75 EDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEAL 134
D + R +F S++IP ++ +++ + L + +A+
Sbjct: 53 -DLPLELIVNLVRGARFFSPNGDSVEIPIETELAYVIDRDAFDEQLAE-------RAQEA 104
Query: 135 GVEIYCGFTATEIYYGKKGEALGILTGEK 163
G E+ G T ++ + + GE
Sbjct: 105 GAELRLGTTVLDVEIHDDRVVVIVRGGEG 133
>gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 49.0 bits (118), Expect = 3e-06
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
+YDV++IGAGPAG AA R ++ V ++EK
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLG--KKVALIEK 34
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 47.9 bits (115), Expect = 7e-06
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54
YD VIIG G GL+ A++ ++ P + +LEK + H
Sbjct: 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARH 42
>gnl|CDD|180558 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 47.8 bits (115), Expect = 7e-06
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
FEYDV++IGAGP G AAIR Q+ L V I+EK
Sbjct: 3 FEYDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEK 35
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 47.3 bits (113), Expect = 1e-05
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
VV++GAGPAG +AA R + L V +E+ + +G
Sbjct: 5 TQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLG 40
>gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The
motif GGXCXXXGCXP near the N-terminus contains a
redox-active disulfide.
Length = 461
Score = 46.5 bits (111), Expect = 2e-05
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48
YDVV+IG GP G AAIR Q+ L V ++EK
Sbjct: 1 AYDVVVIGGGPGGYVAAIRAAQLG--LKVALVEKE 33
>gnl|CDD|162288 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This
model describes thioredoxin-disulfide reductase, a
member of the pyridine nucleotide-disulphide
oxidoreductases (PFAM:PF00070).
Length = 300
Score = 46.1 bits (110), Expect = 2e-05
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA 53
YDV+IIGAGPAGL AAI + N L +I+E G
Sbjct: 1 YDVIIIGAGPAGLTAAIYAARAN--LKTLIIEGMEPGGQ 37
>gnl|CDD|162238 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate
reductase may be used interchangeably in certain
systems. However, a number of species have distinct
complexes, with the fumarate reductase active under
anaerobic conditions. This model represents the
fumarate reductase flavoprotein subunit from several
such species in which a distinct succinate
dehydrogenase is also found. Not all bona fide fumarate
reductases will be found by this model.
Length = 580
Score = 46.0 bits (109), Expect = 3e-05
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57
++D+ +IGAG AGL AAI + NPHL V ++ K + +H ++
Sbjct: 1 TAQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVA 46
>gnl|CDD|183358 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 45.6 bits (109), Expect = 3e-05
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI----LSGAIIDPIGIDSLLPR 72
V IIG G GL+AA R + P + +LE S +G I G I+ +G +S L R
Sbjct: 3 VAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIE-LGPESFLAR 61
>gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 277
Score = 45.4 bits (108), Expect = 4e-05
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI--------IDPIGID 67
DVVIIG GPAGLAAAI ++ L V ++EK E G G I + +D
Sbjct: 1 DVVIIGGGPAGLAAAIYLARLG--LKVALIEK--EGGTCYNRGCIPKKLLLEAAEVGKLD 56
Query: 68 SLLPRWREDKGHPFHT---VVKRDL 89
+D+G V D
Sbjct: 57 LRPLEQYKDEGIEVLLGTGVTAIDK 81
Score = 30.4 bits (69), Expect = 1.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 2 NSCDILHNKDVFEYDVVIIGAGPAGLAAAI 31
S D L ++ + VV++G G GL A
Sbjct: 124 TSDDALALREKPKKRVVVVGGGYIGLELAA 153
>gnl|CDD|180885 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 45.3 bits (108), Expect = 4e-05
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
VVIIGAGPAGL AA + V +LE VG
Sbjct: 6 SVVIIGAGPAGLTAAYELLKRG--YPVTVLEADPVVG 40
>gnl|CDD|180382 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 44.7 bits (106), Expect = 7e-05
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 11 DVFEYDVVIIGAGPAGLAAAIRCKQIN-PHLSVVILEKSAEVGAHILS-----GAIIDPI 64
+V +YDVVI+G+G AGL AA+ + + LSV ++ K+ + +H +S A++ P
Sbjct: 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPE 61
Query: 65 GIDSL-LPRWREDKGHPFHTVVKRDLYWFL 93
DS L + KG F + +D
Sbjct: 62 KGDSFDLHAYDTVKGSDF--LADQDAVEVF 89
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 44.4 bits (105), Expect = 7e-05
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 34/113 (30%)
Query: 10 KDVFEY---DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGI 66
D+ Y DVVI+GAG AGL+ A + NP++ V I+E+S G GA
Sbjct: 85 TDMITYADTDVVIVGAGSAGLSCAYELSK-NPNVKVAIIEQSVSPGG----GA------- 132
Query: 67 DSLLPRWREDKGHPFHT-VVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIV 118
W G F VV++ + FL+ + +P+ D +E+Y+V
Sbjct: 133 ------WL--GGQLFSAMVVRKPAHLFLDE---LGVPY-------DEQENYVV 167
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 43.7 bits (103), Expect = 1e-04
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL 56
+YD+VI+GAG AG++AAI K ++ VILEK G + +
Sbjct: 61 KYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVAGGNTM 101
>gnl|CDD|180899 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 43.7 bits (104), Expect = 1e-04
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 35/100 (35%)
Query: 17 VVIIGAGPAGLAAAIR-CKQINPHLSVVILEKSAEVGA-----------------HILSG 58
+ I+G G AGLAAA R K+ V + E ++G HI
Sbjct: 2 IAIVGGGIAGLAAAYRLAKR---GHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKS 58
Query: 59 -----AIIDPIGIDSLLPRWRE--------DKGHPFHTVV 85
++D +G++ L RWRE K +P T +
Sbjct: 59 DEALLELLDELGLEDKL-RWRETKTGYYVDGKLYPLGTPL 97
>gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 43.3 bits (103), Expect = 1e-04
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGA-HILSGAI------------ 60
++DV++IG G AGL AA+ + V ++ K GA H SG+I
Sbjct: 2 KFDVLVIGGGLAGLTAALAAAEAG--KRVALVAKGQ--GALHFSSGSIDLLGYLPDGQPV 57
Query: 61 IDPI-GIDSLLPRWREDKGHPFHTV----VKRDLYWF 92
DP + +L + HP+ V V+ L F
Sbjct: 58 SDPFEALAALA---EQAPEHPYSLVGADAVREALAQF 91
>gnl|CDD|181714 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 43.5 bits (103), Expect = 2e-04
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Query: 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK---------SAEVGA 53
F+ D+ IIGAG AGL AAI + NP+L + ++ K +AE G+
Sbjct: 1 QTFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGS 52
>gnl|CDD|180333 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 43.0 bits (102), Expect = 2e-04
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
EYD+VIIG GP G AAIR Q+ L ++EK
Sbjct: 4 EYDLVIIGGGPGGYVAAIRAGQLG--LKTALVEK 35
>gnl|CDD|181132 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 43.1 bits (102), Expect = 2e-04
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
YDVV++GAGP G AAIR Q+ L ++EK
Sbjct: 5 YDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEK 35
>gnl|CDD|179973 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 42.5 bits (101), Expect = 3e-04
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 13 FEYDVVIIGAGPAGLAAAIR-CKQINPHLSVVILEKSAEVG 52
++YD+V+IG+GPAG AA++ K V ++E+ VG
Sbjct: 4 YDYDLVVIGSGPAGEGAAMQAAKL---GKRVAVIERYRNVG 41
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 42.0 bits (99), Expect = 3e-04
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-LSGAII 61
YDVV++G+G G+ AA+ L +I+EK +VG +SG ++
Sbjct: 6 TYDVVVVGSGGGGMCAALAAADSG--LEPLIVEKQDKVGGSTAMSGGVL 52
>gnl|CDD|183786 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 42.0 bits (99), Expect = 4e-04
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
E+DV++IGAG AG++AA+ L V+++E++ VG
Sbjct: 16 EFDVIVIGAGAAGMSAALFAAIAG--LKVLLVERTEYVG 52
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 42.1 bits (99), Expect = 4e-04
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57
YDVVIIG GP G AAIR Q+ L V +E + +G L+
Sbjct: 3 SYDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLN 44
>gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 41.9 bits (99), Expect = 5e-04
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
EYDVV++G+G AG+ AA+ + LS V++EK+ G
Sbjct: 7 EYDVVVVGSGAAGMVAAL--TAAHRGLSTVVVEKAPHYG 43
>gnl|CDD|180529 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 41.8 bits (99), Expect = 5e-04
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQ 35
++DVV+IGAGP G AAIR Q
Sbjct: 4 QFDVVVIGAGPGGYVAAIRAAQ 25
>gnl|CDD|114555 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 41.5 bits (98), Expect = 6e-04
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51
D+VI+GAG AGL A+R +Q P L V++++
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGP 36
>gnl|CDD|180946 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 41.5 bits (98), Expect = 6e-04
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 16/72 (22%)
Query: 13 FEYDVVIIGAGPAG--LAAAIRCKQINPHLSVVILE-KSAEVGA--------HILSGAII 61
YDV I+G G G LAAA++ + L + ++E + AE A +LS I
Sbjct: 17 LTYDVAIVGGGIVGLTLAAALK----DSGLRIALIEAQPAEAAAAKGQAYALSLLSARIF 72
Query: 62 DPIGI-DSLLPR 72
+ IG+ + +LP+
Sbjct: 73 EGIGVWEKILPQ 84
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 41.3 bits (97), Expect = 7e-04
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 20/110 (18%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS--GAI------IDPIG 65
E+DVVI+G G AG AA+ K+++P L V ++ K+ + +H ++ G I +DP
Sbjct: 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDP-- 60
Query: 66 IDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEH 115
DS W + H F TV D +L Q ++ I PD + + EH
Sbjct: 61 EDS----W---EAHAFDTVKGSD---YLADQDAVAILTQEAPDVIIDLEH 100
>gnl|CDD|180733 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 41.4 bits (98), Expect = 7e-04
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL-SGAI 60
D++IIG G AG AA K+ P L V+I+EK A+I SGA+
Sbjct: 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK-----ANIKRSGAV 53
>gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 985
Score = 40.9 bits (96), Expect = 8e-04
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS-GAIID 62
DV+++GAGPAGLAAA+ V+++++ E G +LS ID
Sbjct: 165 DVLVVGAGPAGLAAALAAA--RAGARVILVDEQPEAGGSLLSEAETID 210
>gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 40.8 bits (96), Expect = 8e-04
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
DV++IG+G GL+AAI +++ L VV+LEK G
Sbjct: 9 TCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVFG 45
>gnl|CDD|162543 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes
a family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble
periplasmic protein with four heme groups, a
non-covalently bound FAD, and essentially
unidirectional fumarate reductase activity. At least
seven distinct members of this family are found in
Shewanella oneidensis, a species able to use a wide
variety of pathways for respiraton.
Length = 439
Score = 40.8 bits (96), Expect = 9e-04
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH-ILSGA 59
DVV++G+G AGL+AA+ K+ +VV+LEK +G + ++
Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGA-ANVVLLEKMPVIGGNSAIAAG 44
>gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 40.7 bits (96), Expect = 0.001
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50
D+V++GAGPAGL+ A L V ++E+
Sbjct: 4 SDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQPL 37
>gnl|CDD|132372 TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase.
This clade of sequences are members of the pfam01266
family of FAD-dependent oxidoreductases. Characterized
proteins within this family include
glycerol-3-phosphate dehydrogenase (1.1.99.5),
sarcosine oxidase beta subunit (1.5.3.1) and a number
of deaminating amino acid oxidases (1.4.-.-). These
genes have been consistently observed in a genomic
context including genes for the import and catabolism
of 2-aminoethylphosphonate (AEP). If the substrate of
this oxidoreductase is AEP itself, then it is probably
acting in the manner of a deaminating oxidase,
resulting in the same product (phosphonoacetaldehyde)
as the transaminase PhnW (TIGR02326), but releasing
ammonia instead of coupling to pyruvate:alanine.
Alternatively, it is reasonable to suppose that the
various ABC cassette transporters which are also
associated with these loci allow the import of
phosphonates closely related to AEP which may not be
substrates for PhnW.
Length = 460
Score = 40.5 bits (95), Expect = 0.001
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
DV I+G G GL AI KQ P L V++LE
Sbjct: 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEA 57
>gnl|CDD|181124 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAH 54
YDVV+IGAG AGL AAI ++ L V ++ KS AH
Sbjct: 8 SYDVVVIGAGGAGLRAAIEARERG--LRVAVVCKSLFGKAH 46
>gnl|CDD|185217 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 39.8 bits (94), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 7 LHNKDVFEYDVVIIGAGPAGLAAAI 31
L+ KD YDV+++G GPAG AAAI
Sbjct: 206 LNAKDP--YDVLVVGGGPAGAAAAI 228
>gnl|CDD|180449 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 538
Score = 39.5 bits (93), Expect = 0.002
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 9 NKDVFEYDVVIIGAGPAGLAAAI---RCKQINPHLSVVILEKSAEV 51
+ D + DVVI+GAGP GL A + + V++LE+ +
Sbjct: 5 HPDAHDTDVVIVGAGPVGLTLANLLGQY-----GVRVLVLERWPTL 45
>gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 39.4 bits (93), Expect = 0.002
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
YD ++IGAG AG A R + + V ++E+
Sbjct: 6 YDAIVIGAGQAGPPLAARAAGLG--MKVALIER 36
>gnl|CDD|183763 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 39.4 bits (93), Expect = 0.003
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 17 VVIIGAGPAGLAAAIRCKQI---NPHLSVVILEKSAEVG 52
V ++G+GPAGLAAA H V + E++ +G
Sbjct: 146 VAVVGSGPAGLAAA----DQLARAGH-KVTVFERADRIG 179
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 403
Score = 39.2 bits (92), Expect = 0.003
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILE 46
DVVI G G GLA A+ KQ PHL V +++
Sbjct: 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVD 33
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one
C subunit in the genome and that genome is lacking the
F subunit partner (also a thioredcxin reductase
homolog) that is usually found (TIGR03140).
Length = 555
Score = 39.0 bits (91), Expect = 0.003
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Query: 15 YDVVIIGAGPAGLAAAI---RCKQINPHLSVVILEKSAEVGAHI 55
YD++IIG GPAGL+A I R K L +I+EK + G I
Sbjct: 5 YDLIIIGGGPAGLSAGIYAGRAK-----LDTLIIEKD-DFGGQI 42
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 38.9 bits (91), Expect = 0.004
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
E DV++IG+G AGL+AA+ L V+++EK G
Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHG--LKVIVVEKDPVFG 48
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 38.7 bits (91), Expect = 0.004
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 15 YDVVIIGAGPAGLAAAI 31
D+ +IG GPAGLAAAI
Sbjct: 8 TDIAVIGGGPAGLAAAI 24
>gnl|CDD|132421 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase.
Length = 419
Score = 38.5 bits (90), Expect = 0.005
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 23/129 (17%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA--------EVGAHILSG-AIIDPIG 65
+DV+IIG G AGL+ A+R + +++ +SA ++ + + G A+ P
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQSALHFSSGSLDLLSRLPDGQAVEQP-- 58
Query: 66 IDSLLPRWREDKGHPFH----TVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHY-IVSL 120
+D+L ++ HP+ T V L WF ++ +P + H+ + L
Sbjct: 59 MDALEALAQQAPEHPYSKLGKTKVLALLQWFERLLKAQGLPLVGQSE----LNHWRLTPL 114
Query: 121 GQVCR--WL 127
G R WL
Sbjct: 115 GT-LRATWL 122
>gnl|CDD|181125 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 38.4 bits (90), Expect = 0.005
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGA 59
DVV++G+G AGL AA+ ++ V+++ K A + G+
Sbjct: 18 DVVVVGSGVAGLTAALAARR--AGRRVLVVTK-----AALDDGS 54
>gnl|CDD|181289 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 38.1 bits (89), Expect = 0.006
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 12 VFEYDVVIIGAGPAGLAAAIRCKQ 35
YDVVI+GAG AG+ AAI
Sbjct: 3 QHRYDVVIVGAGGAGMRAAIEAGP 26
>gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 38.3 bits (90), Expect = 0.006
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 10 KDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGA 59
D E DV I+GAGP+GL AA + L V + E+ G + G
Sbjct: 21 LDYLEVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGGGMWGGG 68
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 38.1 bits (89), Expect = 0.006
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48
++IIG AG++AA + K++N L + + EK+
Sbjct: 3 IIIIGGTAAGMSAAAKAKRLNKELEITVYEKT 34
>gnl|CDD|181640 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 38.0 bits (89), Expect = 0.006
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49
+ DV+IIG+G AGL+ A+R + H V +L K
Sbjct: 7 HQCDVLIIGSGAAGLSLALR---LAEHRRVAVLSKGP 40
>gnl|CDD|163151 TIGR03140, AhpF, alkyl hydroperoxide reductase, F subunit. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Length = 515
Score = 37.3 bits (87), Expect = 0.011
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 15 YDVVIIGAGPAGLAAAI 31
YDV+++G GPAG AAAI
Sbjct: 213 YDVLVVGGGPAGAAAAI 229
>gnl|CDD|181243 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 37.2 bits (87), Expect = 0.013
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 17 VVIIGAGPAGLAAAIRCKQ 35
VV++GAGP GLA AI Q
Sbjct: 26 VVVVGAGPVGLALAIDLAQ 44
>gnl|CDD|161930 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This protein
is a flavoprotein and has a beta-alpha-beta
dinucleotide binding motif near the amino end.
Length = 462
Score = 37.1 bits (86), Expect = 0.013
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSV--VILEKSAEVGAHI----LSGAIIDPIGIDSL 69
VVIIG G +GL AA ++ P L V ++E S VG I G +I+ G DS
Sbjct: 4 HVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIE-RGPDSF 62
Query: 70 LPR 72
L R
Sbjct: 63 LER 65
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 36.6 bits (85), Expect = 0.016
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
D+ +IG GPAGLA A+ + P L V ++E +
Sbjct: 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIP 35
>gnl|CDD|183734 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 36.5 bits (85), Expect = 0.016
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 30/85 (35%)
Query: 17 VVIIGAGPAGLAAA--IRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWR 74
V IIGAGPAGLAAA + C + V + +K E G +L G +P +R
Sbjct: 21 VAIIGAGPAGLAAAGYLACLG---Y-EVHVYDKLPEPGGLMLFG-----------IPEFR 65
Query: 75 -------------EDKGHPFHTVVK 86
E+ G FHT K
Sbjct: 66 IPIERVREGVKELEEAGVVFHTRTK 90
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 36.4 bits (85), Expect = 0.018
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV-GAHILSGAII 61
E DVV++G G AG AAI V++LE++A GA LSG +I
Sbjct: 20 EADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGAGGATALSGGVI 66
>gnl|CDD|183296 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 36.3 bits (85), Expect = 0.019
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 17 VVIIGAGPAGLAAAIR 32
V +IGAGPAGL AA R
Sbjct: 143 VAVIGAGPAGLTAAHR 158
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 35.5 bits (82), Expect = 0.034
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 15 YDVVIIGAGPAGLAAAIR 32
D+V++G GPAGLA A +
Sbjct: 29 VDLVVVGGGPAGLAVAQQ 46
>gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases
specific for the biosyntheses of bacteriochlorophyll
and chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction
of the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ).
Length = 388
Score = 35.5 bits (82), Expect = 0.035
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
YDV +IG GP+G AA + + ++LE+
Sbjct: 1 YDVAVIGGGPSGATAAETLARAG--IETILLER 31
Score = 32.8 bits (75), Expect = 0.24
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 314 QSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKKHD 367
+ P+ F L+G AAG V +G + A+ SG +AA+ I E L NG D
Sbjct: 256 KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATD 309
>gnl|CDD|162642 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4, ) and UbiF (which acts at position 5). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF.
Length = 385
Score = 35.6 bits (83), Expect = 0.036
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49
D+VI+G G GLA A+ + L + ++E +
Sbjct: 1 DIVIVGGGMVGLALALALARSG--LKIALIEATP 32
>gnl|CDD|181326 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 35.7 bits (83), Expect = 0.036
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49
+V IG GPAGL A+ K ++P V ++E++
Sbjct: 3 IVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35
>gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted
to lycopene by desaturation at four (two symmetrical
pairs of) sites. This is achieved by two enzymes (crtP
and crtQ) in cyanobacteria (Gloeobacter being an
exception) and plants, but by a single enzyme in most
other bacteria and in fungi. This single enzyme is
called the bacterial-type phytoene desaturase, or CrtI.
Most members of this family, part of the larger Pfam
family pfam01593, which also contains amino oxidases,
are CrtI itself; it is likely that all members act on
either phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis.
Length = 502
Score = 35.3 bits (82), Expect = 0.036
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 12/41 (29%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHL-----SVVILEKSAEVG 52
V+IGAG GLA AIR L V ++E+ + G
Sbjct: 1 AVVIGAGFGGLALAIR-------LAAAGIPVTVVEQRDKPG 34
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 35.2 bits (81), Expect = 0.040
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
D +I+G G AG A+R ++ P + ++E +G
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIG 37
>gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine.This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis.
Length = 254
Score = 35.2 bits (81), Expect = 0.044
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 11 DVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSG 58
D E DV+I+GAGP+GL AA + L V +LE+S G G
Sbjct: 18 DYAESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGSWGG 63
>gnl|CDD|181023 PRK07538, PRK07538, hypothetical protein; Provisional.
Length = 413
Score = 35.3 bits (82), Expect = 0.049
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEV 51
V+I G G GL A+ Q + VV+ E + E+
Sbjct: 2 KVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPEL 35
>gnl|CDD|181360 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 35.0 bits (81), Expect = 0.058
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA---EVG 52
E DV+I+G GPAGL A + P ++ I+E+ E+G
Sbjct: 32 EVDVLIVGCGPAGLTLAAQLSAF-PDITTRIVERKPGRLELG 72
>gnl|CDD|179979 PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.
Length = 494
Score = 34.7 bits (81), Expect = 0.060
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 14 EYDVVIIGAG--PAGLAAAIRCKQINPHLSVVILEKSAEVGA 53
+ DVV+IG G A L + K++ P S+ + E+ V
Sbjct: 5 KTDVVLIGGGIMSATLGTLL--KELEPEWSITMFERLDGVAL 44
>gnl|CDD|178558 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 34.8 bits (80), Expect = 0.064
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 12/41 (29%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHL-----SVVILEKSAEVG 52
++++GAGPAGL AA HL SV +LE + +G
Sbjct: 696 IIVVGAGPAGLTAA-------RHLQRQGFSVTVLEARSRIG 729
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 34.7 bits (80), Expect = 0.065
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
YDV IIG GPAG A A + + + V+ ++K + G
Sbjct: 1 HYDVAIIGLGPAGSALA---RLLAGKMKVIAIDKKHQCG 36
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 34.8 bits (80), Expect = 0.068
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
V+++G G AG +AAI + + V++LEK A++G
Sbjct: 412 VIVVGGGLAGCSAAI--EAASCGAQVILLEKEAKLG 445
>gnl|CDD|180450 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 34.6 bits (80), Expect = 0.070
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 16 DVVIIGAGPAGLAAAI 31
DV+I+GAGP GL AI
Sbjct: 5 DVLIVGAGPTGLTLAI 20
>gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 34.6 bits (80), Expect = 0.074
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 17 VVIIGAGPAGLAAA 30
V +IGAGPAGLAAA
Sbjct: 542 VAVIGAGPAGLAAA 555
>gnl|CDD|180495 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 34.6 bits (80), Expect = 0.074
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
+ DV+IIG+G AG AAI + +VVI+ K
Sbjct: 5 IMITDVLIIGSGGAGARAAIEAE---RGKNVVIVSK 37
>gnl|CDD|181345 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 34.1 bits (79), Expect = 0.089
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE 50
DV++IG G A L AA+ ++ SV++LE +
Sbjct: 4 MVDVLVIGGGNAALCAALAAREAGA--SVLLLEAAPR 38
>gnl|CDD|179368 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 34.0 bits (79), Expect = 0.089
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILE 46
EYD +IIGAG AG A R + +P +SV++LE
Sbjct: 5 EYDYIIIGAGSAGCVLANRLSE-DPDVSVLLLE 36
>gnl|CDD|161923 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the
B protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the
pyridine nucleotide portion of NAD. This model
identifies proteins that cluster as L-aspartate oxidase
(a flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other
NadB but is just one gene away from NadA.
Length = 488
Score = 34.0 bits (78), Expect = 0.098
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
DVV+IG+G AGL+AA+ + V++L K
Sbjct: 2 SCDVVVIGSGAAGLSAALA---LADQGRVIVLSK 32
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 34.2 bits (79), Expect = 0.10
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVIL 45
+ D ++IGAG AGL AI Q L ++L
Sbjct: 3 IIYTDALVIGAGLAGLRVAIAAAQRG--LDTIVL 34
>gnl|CDD|180788 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 33.9 bits (78), Expect = 0.11
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 13 FEYDVVIIGAGPAGLAAA 30
++D+ I+GAGP GLA A
Sbjct: 10 PDFDIAIVGAGPVGLALA 27
>gnl|CDD|181641 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 33.8 bits (78), Expect = 0.11
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQ 35
+YDVV++GAG AGL A + +
Sbjct: 12 KYDVVVVGAGGAGLRATLGMAE 33
>gnl|CDD|171764 PRK12845, PRK12845, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 564
Score = 34.0 bits (78), Expect = 0.11
Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
D++++G+G G+AAA+ ++ LSV+I+EKS+ VG
Sbjct: 18 DLLVVGSG-TGMAAALAAHELG--LSVLIVEKSSYVG 51
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 33.8 bits (78), Expect = 0.11
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAE-VGAHI 55
YD++I+GAG GLA A LSV ++E+S+ GA +
Sbjct: 1 YDLIIVGAGILGLAHAYAA--ARRGLSVTVIERSSRAQGASV 40
>gnl|CDD|180870 PRK07190, PRK07190, hypothetical protein; Provisional.
Length = 487
Score = 34.0 bits (78), Expect = 0.11
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA---EVG 52
DVVIIGAGP GL A + L+ VI++KS EVG
Sbjct: 7 DVVIIGAGPVGLMCAYLGQLCG--LNTVIVDKSDGPLEVG 44
>gnl|CDD|162675 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH.
Length = 463
Score = 33.9 bits (78), Expect = 0.12
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILE 46
YD+VIIG+G A AAAI+ ++ SV ++E
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELG--ASVAMVE 30
>gnl|CDD|177713 PLN00093, PLN00093, geranylgeranyl diphosphate reductase;
Provisional.
Length = 450
Score = 33.6 bits (77), Expect = 0.13
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 325 SLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK 365
+L+G AAG+V +G + A SG + AE IVE NG +
Sbjct: 312 ALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTR 352
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 33.3 bits (76), Expect = 0.18
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 17 VVIIGAGPAGLAAAIRCKQINP--HLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWR 74
V ++G+GPAGLAAA Q+N H +V + E+ G ++ G +P +
Sbjct: 146 VAVVGSGPAGLAAA---DQLNRAGH-TVTVFEREDRCGGLLMYG-----------IPNMK 190
Query: 75 EDKGH 79
DK
Sbjct: 191 LDKAI 195
>gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 33.3 bits (76), Expect = 0.19
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
YDVV++G+G GL+AA+ V+++EK++ G
Sbjct: 8 TYDVVVVGSGAGGLSAAVAAA--YGGAKVLVVEKASTCG 44
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 33.2 bits (76), Expect = 0.20
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 17 VVIIGAGPAGLAAA---IRCKQINPH-LSVVILEKSAEVGAHILSGAIIDPIGID-SLLP 71
V IIGAGPAGLA A R + ++V + ++ E+G + G I +D SLL
Sbjct: 330 VAIIGAGPAGLACADVLAR------NGVAVTVYDRHPEIGGLLTFG--IPAFKLDKSLLA 381
Query: 72 RWRE 75
R RE
Sbjct: 382 RRRE 385
Score = 28.9 bits (65), Expect = 3.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 495 PSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDP 534
P R CP G ++ + N Q CI CK+CV+ P
Sbjct: 63 PCARSCPNGAISHVDDSIQVN----QQKCIGCKSCVVACP 98
>gnl|CDD|180957 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
+DV+++G+G AGL AA+ C + HL V ++ K
Sbjct: 10 FDVLVVGSGAAGLYAAL-C--LPSHLRVGLITK 39
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 33.1 bits (76), Expect = 0.21
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI 55
V++IG G AG+AAA R + V +LE +G +
Sbjct: 3 VIVIGGGIAGIAAA-RALH-DASFKVTLLESRDRIGGRV 39
>gnl|CDD|177829 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 32.9 bits (75), Expect = 0.23
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHIL--SGAIIDPIGID 67
V +IGAG AGL AA ++ H +VV+ E+ +VG + + DP+ +D
Sbjct: 13 VAVIGAGAAGLVAARELRREG-H-TVVVFEREKQVGGLWVYTPKSESDPLSLD 63
>gnl|CDD|162643 TIGR01989, COQ6, Ubiquinone biosynthesis mono0xygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 32.8 bits (75), Expect = 0.24
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 15 YDVVIIGAGPAG--LAAAIRCKQINPHLSVVILE 46
+DVVI+G GP G LAAA+ + L V++L+
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLD 34
>gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 32.5 bits (75), Expect = 0.25
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 17 VVIIGAGPAGLAAA 30
V +IG GPAGL+AA
Sbjct: 140 VAVIGGGPAGLSAA 153
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 32.9 bits (75), Expect = 0.25
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 13 FEYDVVIIGAGPAGLAAA 30
F YD+V+IG G G+AAA
Sbjct: 4 FMYDLVVIGGGSGGMAAA 21
>gnl|CDD|178188 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 32.7 bits (75), Expect = 0.26
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57
DV ++GAG +GLAAA ++V++ E VG +I S
Sbjct: 12 SKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRVGGNITS 54
>gnl|CDD|179960 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 32.7 bits (76), Expect = 0.27
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 13 FEYDVVIIGAGPAG----LAAA 30
EYDV+++G G AG LAAA
Sbjct: 3 EEYDVIVVGGGHAGCEAALAAA 24
>gnl|CDD|181316 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.
Length = 392
Score = 32.5 bits (75), Expect = 0.30
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 16/38 (42%)
Query: 17 VVIIGAGPAGL-------AAAIRCKQINPHLSVVILEK 47
V IIGAGPAGL A I V+LE+
Sbjct: 5 VAIIGAGPAGLLLGQLLHLAGIDS---------VVLER 33
>gnl|CDD|181010 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 32.6 bits (75), Expect = 0.32
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVI 44
VI+G G AGL AA+ ++ P VV+
Sbjct: 11 RPVIVGGGLAGLMAAL---KLAPRPVVVL 36
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 32.2 bits (74), Expect = 0.33
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 14 EYDVVIIGAGPAGLAAA 30
+ DV+++GAG AGL AA
Sbjct: 4 DADVIVVGAGLAGLVAA 20
>gnl|CDD|180451 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 32.1 bits (74), Expect = 0.35
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 16 DVVIIGAGPAGLAAAI---RCKQINPHLSVVILEKSA 49
D I+G GPAG+ + R + V +LEK A
Sbjct: 8 DCCIVGGGPAGMMLGLLLARAG-----VDVTVLEKHA 39
>gnl|CDD|162359 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some
sequence reports interpreted as a stop codon). In some
members of this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 32.1 bits (73), Expect = 0.37
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 13 FEYDVVIIGAGPAGLAAAIRCKQ 35
++YD+++IG G GLAAA
Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAAD 23
>gnl|CDD|162542 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in Gram-negative
bacteria, mitochondria, and some Archaea. Mitochondrial
forms interact with ubiquinone and are designated EC
1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes
in E. coli and other species run primarily in the
opposite direction and are designated fumarate
reductase.
Length = 566
Score = 31.9 bits (73), Expect = 0.42
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
DVVI+GAG AGL AA+ + L+ ++ K
Sbjct: 1 DVVIVGAGLAGLRAAVEAAKAG--LNTAVISK 30
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members
of this protein family are salicylate 1-monooxygenase,
also called salicylate hydroxylase. This enzyme
converts salicylate to catechol, which is a common
intermediate in the degradation of a number of aromatic
compounds (phenol, toluene, benzoate, etc.). The gene
for this protein may occur in catechol degradation
genes, such as those of the meta-cleavage pathway.
Length = 414
Score = 31.7 bits (72), Expect = 0.44
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 17 VVIIGAGPAGLAAAIR-CKQINPHLSVVILEKS---AEVGAHILSGA 59
V IIG G AG+A A+ CK HL+V + E + EVGA + GA
Sbjct: 3 VAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPAFGEVGAGVSFGA 47
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 31.6 bits (72), Expect = 0.48
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 17 VVIIGAGPAGLAAA 30
V IIGAGPAGL AA
Sbjct: 196 VAIIGAGPAGLTAA 209
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 31.6 bits (72), Expect = 0.49
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 12 VFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57
V E+D V+IGAG AG+ AA++ Q S +L K +H +S
Sbjct: 5 VREFDAVVIGAGGAGMRAALQISQSG--QSCALLSKVFPTRSHTVS 48
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 31.6 bits (72), Expect = 0.50
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKS---AEVGAHILSGAIIDPIGIDSL 69
+ IIGAG GL AA ++ V + EK+ EVGA G I I L
Sbjct: 3 IAIIGAGIGGLTAAALLQEQG--HEVKVFEKNESVKEVGA----GIGIGDNVIKKL 52
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 31.8 bits (72), Expect = 0.50
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 14 EYDVVIIGAGPAGLAAAI 31
YD V++GAG AGL AAI
Sbjct: 50 TYDAVVVGAGGAGLRAAI 67
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 31.7 bits (72), Expect = 0.51
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWR 74
+DVVI+GAG +G+ A+++ + LSV +L K +H ++ GI + L
Sbjct: 13 FDVVIVGAGGSGMRASLQLARAG--LSVAVLSKVFPTRSHTVAAQ----GGIGASLGNMS 66
Query: 75 EDKGHPFH 82
ED H +H
Sbjct: 67 EDNWH-YH 73
>gnl|CDD|178181 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 31.7 bits (72), Expect = 0.52
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 17 VVIIGAGPAGLAAAIR---CKQINPHLSVVILEKSAEVGAHILS 57
+VIIGAG AGL AA + N + ++E +G I +
Sbjct: 8 IVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51
>gnl|CDD|180727 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 31.8 bits (73), Expect = 0.53
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 20/140 (14%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILE---KSAEVGAHI-LSGAII---DPIGI-D 67
V+I+G G GL+AAI ++ ++V ++E + GA I L G + +G+ D
Sbjct: 6 KVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLD 63
Query: 68 SLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSLGQVCRWL 127
L + G F V D + P D +L ++ L
Sbjct: 64 ECL-----EAGFGFDGVDLFDPDG--TLLAELPTPRLAGDDLPGGGGIMRPALARI---L 113
Query: 128 KNKAEALGVEIYCGFTATEI 147
+ A A G ++ G T T I
Sbjct: 114 ADAARAAGADVRLGTTVTAI 133
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 31.7 bits (72), Expect = 0.54
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGID-SLLPRWRE 75
V +IGAGPAGLA A + VV+ ++ E+G + G I +D ++L R RE
Sbjct: 144 VAVIGAGPAGLACADIL--ARAGVQVVVFDRHPEIGGLLTFG--IPSFKLDKAVLSRRRE 199
>gnl|CDD|168408 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 31.5 bits (72), Expect = 0.65
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 12 VFEYDVVIIGAGPAGLAAAI 31
E V+I+G GP GLA A+
Sbjct: 5 TSETPVLIVGGGPVGLALAL 24
>gnl|CDD|162325 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. Sarcosine oxidase catalyzes the
oxidative demethylation of sarcosine to glycine. The
reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 407
Score = 31.3 bits (71), Expect = 0.69
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
YDV+I+G G GLA A + + +V +LEK
Sbjct: 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEK 63
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 30.8 bits (69), Expect = 0.87
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 22/71 (30%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILE--------------------KSAEVGAHI 55
VVI+GAG +GLAAA + + V +LE +A++G +
Sbjct: 186 SVVIVGAGLSGLAAARQLMRFG--FKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSV 243
Query: 56 LSGAIIDPIGI 66
L+G + +P+GI
Sbjct: 244 LTGTLGNPLGI 254
>gnl|CDD|181141 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 31.0 bits (71), Expect = 0.94
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILS 57
+VIIG GP G AA+ Q+ V ++E+ GA +L+
Sbjct: 4 IVIIGGGPGGYEAALVAAQLGAD--VTVIERDGLGGAAVLT 42
>gnl|CDD|162990 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp.
strain PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria,
where myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed
to myxoxanthophyll.
Length = 492
Score = 30.4 bits (69), Expect = 1.1
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 17 VVIIGAGPAGL-AAAIRCKQINPHLSVVILEKSAEVG 52
VV+IGAG AGL AAA+ K+ V +LE+ A+ G
Sbjct: 4 VVVIGAGIAGLTAAALLAKR---GYRVTLLEQHAQPG 37
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 30.3 bits (69), Expect = 1.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQ 35
++DVV++G G G + A+ Q
Sbjct: 5 KFDVVVVGGGLVGASLALALAQ 26
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 30.6 bits (69), Expect = 1.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 11 DVFEYDVVIIGAGPAGLAAA 30
+ EYD V+IG G AGL +A
Sbjct: 2 EKIEYDAVVIGGGLAGLMSA 21
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 30.5 bits (69), Expect = 1.3
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 17 VVIIGAGPAGLAAA 30
V I+G+GPAGL+AA
Sbjct: 286 VAIVGSGPAGLSAA 299
>gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 584
Score = 30.2 bits (68), Expect = 1.3
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHI-LSGAII 61
E DV+++G+G G+ AA+ L +++EKSA G LSG I
Sbjct: 11 EVDVLVVGSGGGGMTAALTAAARG--LDTLVVEKSAHFGGSTALSGGGI 57
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 30.1 bits (68), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
V +IGAGPAGL+A + V + EK + G
Sbjct: 540 VAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPG 573
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 30.0 bits (68), Expect = 1.6
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
V+I+G G GLAAA+ + + V +LE++AE+G
Sbjct: 7 VLIVGGGIGGLAAALALARQG--IKVKLLEQAAEIG 40
>gnl|CDD|179330 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 30.2 bits (69), Expect = 1.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 16 DVVIIGAGPAGLAAAIR 32
D IIG G AG A A+
Sbjct: 262 DAAIIGGGIAGAALALA 278
>gnl|CDD|131083 TIGR02028, ChlP, geranylgeranyl reductase. This model represents
the reductase which acts reduces the geranylgeranyl
group to the phytyl group in the side chain of
chlorophyll. It is unclear whether the enzyme has a
preference for acting before or after the attachment of
the side chain to chlorophyllide a by chlorophyll
synthase. This clade is restricted to plants and
cyanobacteria to separate it from the homologues which
act in the biosynthesis of bacteriochlorophyll.
Length = 398
Score = 29.9 bits (67), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 325 SLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERLSNGKK 365
+L+G AAG+V +G + A SG + AE IVE G
Sbjct: 273 ALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGA 313
>gnl|CDD|185473 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 29.7 bits (67), Expect = 1.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 14 EYDVVIIGAGPAGLAAA 30
YD V++GAG AGL AA
Sbjct: 29 TYDAVVVGAGGAGLRAA 45
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 29.7 bits (67), Expect = 1.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 17 VVIIGAGPAGLAAAIRCKQ 35
+V+IG GPAG AAI Q
Sbjct: 3 LVVIGGGPAGYVAAITAAQ 21
>gnl|CDD|182134 PRK09897, PRK09897, hypothetical protein; Provisional.
Length = 534
Score = 29.7 bits (67), Expect = 1.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
+ I+GAGP G+ Q LS+ I E++ E G
Sbjct: 4 IAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 29.7 bits (67), Expect = 2.0
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 11 DVFEYDVVIIGAGPAGLAAAIRC--KQINPHLSVV 43
++ + D+V++ G GL + I KQINP++ ++
Sbjct: 165 EISDLDMVVVPVGGGGLISGIASAAKQINPNIKII 199
>gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional.
Length = 433
Score = 29.7 bits (67), Expect = 2.1
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48
DV+I+G+G AGL +A+ + L ++++ K
Sbjct: 4 YADVLIVGSGVAGLYSAL---NLRKDLKILMVSKG 35
>gnl|CDD|181197 PRK08013, PRK08013, oxidoreductase; Provisional.
Length = 400
Score = 29.6 bits (67), Expect = 2.1
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49
DVVI G G GLA A C L V +LE+
Sbjct: 4 VDVVIAGGGMVGLAVA--CGLQGSGLRVAVLEQRV 36
>gnl|CDD|181844 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional.
Length = 509
Score = 29.4 bits (67), Expect = 2.3
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 17 VVIIGAGPAGLAA 29
V++IGAG AGLAA
Sbjct: 168 VLVIGAGVAGLAA 180
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 29.6 bits (66), Expect = 2.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 7 LHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48
L K YD+++IG G G+AAA R + N V ++EK
Sbjct: 41 LKKKPRMVYDLIVIGGGSGGMAAARRAAR-NK-AKVALVEKD 80
>gnl|CDD|181220 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48
DV+IIG+G A L A K++ +V+I+ K
Sbjct: 3 SADVIIIGSGIAALTVA---KELCHEYNVIIITKK 34
>gnl|CDD|162640 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.
This model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This
family is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype.
Length = 382
Score = 29.6 bits (67), Expect = 2.4
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILEK 47
DV+I+G G GL+ A+ ++ + + ++E
Sbjct: 1 DVIIVGGGLVGLSLALALSRLG-KIKIALIEA 31
>gnl|CDD|178300 PLN02697, PLN02697, lycopene epsilon cyclase.
Length = 529
Score = 29.4 bits (66), Expect = 2.5
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 16 DVVIIGAGPAGLAAA 30
D+V+IG GPAGLA A
Sbjct: 110 DLVVIGCGPAGLALA 124
>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.
Length = 341
Score = 29.4 bits (67), Expect = 2.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVI------LEKSAEVGA 53
DV+I GAGP G+ AA K + V+ LE + ++GA
Sbjct: 166 DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA 209
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 29.2 bits (66), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49
D+ I+G G G A A+ Q SV +LE +A
Sbjct: 6 TDIAIVGGGMVGAALALGLAQHG--FSVAVLEHAA 38
>gnl|CDD|177962 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 29.2 bits (65), Expect = 3.3
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 30/94 (31%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILE--------------------KSAEVGAHI 55
+VV++GAG AGL AA + + VV+LE +A++G +
Sbjct: 240 NVVVVGAGLAGLVAARQLLSMG--FKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSV 297
Query: 56 LSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDL 89
L+G +P+G+ L R G P H V RD+
Sbjct: 298 LTGINGNPLGV---LAR---QLGLPLHKV--RDI 323
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 29.1 bits (65), Expect = 3.5
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVIL 45
EYDV IIG G G AAAI + L V+I
Sbjct: 116 EYDVGIIGCGVGGHAAAINAMERG--LKVIIF 145
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears
to be present in all complete eubacterial genomes so
far, as well as Saccharomyces cerevisiae. A subset of
these organisms have a closely related protein. GidA is
absent in the Archaea. It appears to act with MnmE, in
an alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34
in certain tRNAs. The shorter, related protein,
previously called gid or gidA(S), is now called TrmFO
(see model TIGR00137).
Length = 617
Score = 28.9 bits (65), Expect = 3.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 15 YDVVIIGAGPAGLAAA 30
+DV++IG G AG AA
Sbjct: 1 FDVIVIGGGHAGCEAA 16
>gnl|CDD|130997 TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB
family of poly(A) polymerases (also known as plasmid
copy number protein). These enzymes sequentially add
adenosine nucleotides to the 3' end of RNAs, targeting
them for degradation by the cell. This was originally
described for anti-sense RNAs, but was later
demonstrated for mRNAs as well. Members of this family
are as yet limited to the gamma- and
beta-proteobacteria, with putative members in the
Chlamydiacae and spirochetes. This family has homology
to tRNA nucleotidyltransferase (cca).
Length = 410
Score = 29.0 bits (65), Expect = 3.7
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 191 GACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRR 232
A + S+ P++F + +E+W+++ + RR
Sbjct: 308 DAIRDFVEEQCAPISI-----PKRFSIPTREIWQMQLRLERR 344
>gnl|CDD|184985 PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.
Length = 349
Score = 28.9 bits (65), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 287 THPDIRIIFTEGE-RLEYGARVISEGGWQSVPKLSF 321
+ D R I + G R+EY A IS+GG P+ F
Sbjct: 34 VYADARGIHSHGAVRVEYYAERISKGGTNREPEFRF 69
>gnl|CDD|178280 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 28.5 bits (64), Expect = 4.0
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 16 DVVIIGAGPAGLAAAIRCKQ--INPHLSVVILEKSAEVGAHI 55
V+I+GAG +G++AA + I ++ILE + +G +
Sbjct: 28 SVIIVGAGMSGISAAKTLSEAGIE---DILILEATDRIGGRM 66
>gnl|CDD|181399 PRK08348, PRK08348, NADH-plastoquinone oxidoreductase subunit;
Provisional.
Length = 120
Score = 28.6 bits (64), Expect = 4.1
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 497 MRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACV 530
+ CPAGV+ + + C+ C CV
Sbjct: 51 VTVCPAGVFV--YLPEIRKVALWTGRCVFCGQCV 82
>gnl|CDD|161671 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. The gene
is known as glf, ceoA, and rfbD. It is known
experimentally in E. coli, Mycobacterium tuberculosis,
and Klebsiella pneumoniae.
Length = 377
Score = 28.6 bits (64), Expect = 4.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVG 52
+D +I+GAG +G+ A Q+N V+++EK +G
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNK--RVLVVEKRNHIG 37
>gnl|CDD|150636 pfam09985, DUF2223, Domain of unknown function (DUF2223). Members
of this family are found in various prokaryotic
membrane-anchored proteins predicted to be involved in
the regulation of amylopullulanase.
Length = 226
Score = 28.5 bits (64), Expect = 4.4
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 21/90 (23%)
Query: 253 VYHFDDNLVSIGFVLHLD-YRNPW-----ISAYEELQRFKTHPDIRIIFTEGER---LEY 303
V DN V FV NPW S LQ +I + EG L+
Sbjct: 38 VLENGDNYV---FVFKFAELTNPWNGPNGFS----LQLI----NIYLDTGEGGNTSTLKP 86
Query: 304 GARVISEGGWQSVPKLS-FPGGSLIGCAAG 332
GA V E W K++ + G++I G
Sbjct: 87 GANVELEHPWDYALKIAGWDSGTIIYTPDG 116
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 28.4 bits (64), Expect = 4.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 17 VVIIGAGPAGLAAA 30
V +IG+GPAGL A
Sbjct: 143 VAVIGSGPAGLTCA 156
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 28.4 bits (63), Expect = 4.7
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 468 YVKEQPMHLLIKDKDLQ---KKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCI 524
Y+ E+ + ++ D+Q KKS L +YS ++ P+ + ++ +N +N II Q C+
Sbjct: 202 YITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMYPSCI-QFLLDNKQNRNIIPRQLCL 260
Query: 525 HCKACVIKDPNQNIEWNP 542
C D N+ NP
Sbjct: 261 VC-----HDTKYNVC-NP 272
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 28.4 bits (63), Expect = 4.7
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 17 VVIIGAGPAGLAAA 30
V I G+GPAGLAAA
Sbjct: 433 VAICGSGPAGLAAA 446
>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA
protein. Members of this protein family are BoxA, the A
component of the BoxAB benzoyl-CoA oxygenase/reductase.
This oxygen-requiring enzyme acts in an aerobic pathway
of benzoate catabolism via coenzyme A ligation. BoxA is
a homodimeric iron-sulphur-flavoprotein and acts as an
NADPH-dependent reductase for BoxB.
Length = 411
Score = 28.3 bits (63), Expect = 4.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 511 NDENNYIIHAQNCIHCKACVIKDPNQNIE 539
+D+ NY++ A C C ACV P I+
Sbjct: 29 HDDRNYVVKADVCNGCMACVSPCPTGAID 57
>gnl|CDD|182382 PRK10330, PRK10330, formate dehydrogenase-H ferredoxin subunit;
Provisional.
Length = 181
Score = 28.3 bits (63), Expect = 5.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 495 PSMRYCPAGVYEWHQNNDENNYI-IHAQNCIHCKACVIKDP 534
P CP G + + ++ + + CI CK CV+ P
Sbjct: 65 PCANVCPNGAI-----SRDKGFVHVMQERCIGCKTCVVACP 100
>gnl|CDD|181317 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 28.2 bits (63), Expect = 5.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 15 YDVVIIGAGPAGLAAA 30
Y+V+IIG GP GL A
Sbjct: 3 YEVIIIGGGPVGLMLA 18
>gnl|CDD|180410 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 28.2 bits (64), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 13 FEYDVVIIGAGPAGLAAAIR 32
+YD+++IG G G+A+A R
Sbjct: 3 KDYDLIVIGGGSGGIASANR 22
>gnl|CDD|162352 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of plants and some bacteria, including cyanobacteria.
Length = 446
Score = 28.2 bits (63), Expect = 5.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 13 FEYDVVIIGAGPAGLAAA 30
F+YD+ +IGAG G+ AA
Sbjct: 1 FDYDLFVIGAGSGGVRAA 18
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 28.3 bits (63), Expect = 5.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA-----EVGAH 54
YDV I G+GP G A C ++ L V ++E A ++GAH
Sbjct: 1 YDVFIAGSGPIGCTYARLC--VDAGLKVAMVEIGAADSFLKIGAH 43
>gnl|CDD|162541 TIGR01810, betA, choline dehydrogenase. This enzyme is a member
of the GMC oxidoreductase family (pfam00732 and
pfam05199), sharing a common evoluntionary origin and
enzymatic reaction with alcohol dehydrogenase.
Outgrouping from this model, Caulobacter crescentus
shares sequence homology with choline dehydrogenase,
yet other genes participating in this enzymatic
reaction have not currently been identified.
Length = 532
Score = 28.3 bits (63), Expect = 5.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 16 DVVIIGAGPAGLAAAIRCKQINPHLSVVILE 46
D +IIG G AG A R + + SV++LE
Sbjct: 1 DYIIIGGGSAGSVLAGRLSE-DVSNSVLVLE 30
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 28.2 bits (63), Expect = 6.0
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 14 EYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSA 49
+YD+ ++G G G A A+ + SV ++E
Sbjct: 3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36
>gnl|CDD|181263 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
Length = 847
Score = 28.0 bits (63), Expect = 6.4
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 508 HQNNDENNYIIHAQN-CIHCKACV 530
H+N D +I H N CI C CV
Sbjct: 135 HRNQDLGPFISHEMNRCIACYRCV 158
>gnl|CDD|185578 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 27.9 bits (62), Expect = 6.5
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 9 NKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGIDS 68
N D YDV+I+G AG A + V++LE+ + G ++ P G+++
Sbjct: 31 NYD---YDVIIVGGSIAGPVLAKALSKQGR--KVLMLERDLFSKPDRIVGELLQPGGVNA 85
Query: 69 L 69
L
Sbjct: 86 L 86
>gnl|CDD|162633 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G. This model
represents the G subunit (one of 14: A->N) of the
NADH-quinone oxidoreductase complex I which generally
couples NADH and ubiquinone oxidation/reduction in
bacteria and mammalian mitochondria while translocating
protons, but may act on NADPH and/or plastoquinone in
cyanobacteria and plant chloroplasts. This model
excludes related subunits from formate dehydrogenase
complexes.
Length = 603
Score = 27.7 bits (62), Expect = 7.2
Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 508 HQNNDENNYIIHAQN-CIHCKACV 530
+N I CIHC CV
Sbjct: 128 VENKYLGPLIKTEMTRCIHCTRCV 151
>gnl|CDD|182001 PRK09626, oorD, 2-oxoglutarate-acceptor oxidoreductase subunit
OorD; Reviewed.
Length = 103
Score = 27.8 bits (62), Expect = 8.0
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 499 YCPAGVYEWHQNNDENNY------IIHAQNCIHCKAC 529
CPAGV D + ++H ++CI C+ C
Sbjct: 27 VCPAGVLAMRI--DPHAVLGKMIKVVHPESCIGCREC 61
>gnl|CDD|183492 PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur
subunit; Provisional.
Length = 180
Score = 27.7 bits (62), Expect = 8.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 519 HAQNCIHCKACVIKDPNQNI--EWNPPQG 545
+ Q CI C ACV P+ + E + G
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETDLATG 64
>gnl|CDD|132219 TIGR03175, AllD, ureidoglycolate dehydrogenase. This enzyme
converts ureidoglycolate to oxalureate in the
non-urea-forming catabolism of allantoin (GenProp0687).
The pathway has been characterized in E. coli and is
observed in the genomes of Entercoccus faecalis and
Bacillus licheniformis.
Length = 349
Score = 27.6 bits (61), Expect = 8.7
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 280 EELQRFKTHPDIRIIFTEGE-RLEYGARVISEGGWQSVPKLSF 321
+ T D R I + G R+EY A I++GG P F
Sbjct: 27 AIVADVLTFADARGIHSHGAVRVEYYAERIAKGGITREPTFRF 69
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 27.4 bits (61), Expect = 9.0
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 12/47 (25%)
Query: 17 VVIIGAGPAGLAAAIRC--------KQINPHL----SVVILEKSAEV 51
V++G GP G+ A + +NP L V +LE +EV
Sbjct: 176 FVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH.
Length = 449
Score = 27.5 bits (61), Expect = 9.2
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 17 VVIIGAGPAGLAAA 30
V +IGAGPAGLA A
Sbjct: 136 VAVIGAGPAGLACA 149
>gnl|CDD|180718 PRK06834, PRK06834, hypothetical protein; Provisional.
Length = 488
Score = 27.7 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 14 EYDVVIIGAGPAGLAAA 30
E+ VVI G GP GL A
Sbjct: 3 EHAVVIAGGGPTGLMLA 19
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.141 0.446
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,500,596
Number of extensions: 635807
Number of successful extensions: 1459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1442
Number of HSP's successfully gapped: 190
Length of query: 554
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 456
Effective length of database: 3,876,889
Effective search space: 1767861384
Effective search space used: 1767861384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)