BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781024|ref|YP_003065437.1| electron transfer
flavoprotein-ubiquinone oxidoreductase [Candidatus Liberibacter
asiaticus str. psy62]
         (554 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 554

 Score = 1144 bits (2960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/554 (100%), Positives = 554/554 (100%)

Query: 1   MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI 60
           MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI
Sbjct: 1   MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI 60

Query: 61  IDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL 120
           IDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL
Sbjct: 61  IDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL 120

Query: 121 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPML 180
           GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPML
Sbjct: 121 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPML 180

Query: 181 LLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIG 240
           LLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIG
Sbjct: 181 LLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIG 240

Query: 241 WPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGER 300
           WPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGER
Sbjct: 241 WPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGER 300

Query: 301 LEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERL 360
           LEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERL
Sbjct: 301 LEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERL 360

Query: 361 SNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMDIWIQKILGFS 420
           SNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMDIWIQKILGFS
Sbjct: 361 SNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMDIWIQKILGFS 420

Query: 421 FLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPMHLLIKD 480
           FLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPMHLLIKD
Sbjct: 421 FLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPMHLLIKD 480

Query: 481 KDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEW 540
           KDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEW
Sbjct: 481 KDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEW 540

Query: 541 NPPQGGDGPHYVDM 554
           NPPQGGDGPHYVDM
Sbjct: 541 NPPQGGDGPHYVDM 554


>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 481

 Score = 35.8 bits (81), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVV 43
          YD+++IG+GPAG  AAIR  Q+   +++V
Sbjct: 5  YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 466

 Score = 35.4 bits (80), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48
          YDV ++G GPAG A AI+  Q+   ++++  EK+
Sbjct: 3  YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36


>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 461

 Score = 30.0 bits (66), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI 60
          +EYD+V+IGAG +G+ +A    Q+     V I E+    G  ++ G I
Sbjct: 3  YEYDLVVIGAGSSGVRSARLAAQLGKK--VAICEEYRVGGTCVIRGCI 48


>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 321

 Score = 28.1 bits (61), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 17  VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGI------DSLL 70
           ++IIG+GPAG  AAI   +    L  VI+  S   G  +++ +I +  G       D L+
Sbjct: 8   ILIIGSGPAGYTAAIYAAR--AMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM 65

Query: 71  PRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMD--NKEHYIVSLGQVCRWLK 128
            + R+ +   F T + +DL   ++  R    P        D  + +  +++ G   +WL+
Sbjct: 66  EQMRQ-QAENFGTKIIQDLVVSVDLDRH---PFLVETQSGDLWHADAVVIATGSEVKWLR 121

Query: 129 NKAE 132
            ++E
Sbjct: 122 LESE 125


>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 384

 Score = 26.2 bits (56), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 15 YDVVIIGAGPAGLAAAI 31
          +DV+IIG+G AG  AAI
Sbjct: 4  FDVIIIGSGLAGSVAAI 20


>gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score = 25.8 bits (55), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 41  SVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQ 100
           ++V+    A   + ++S  +I    I + +P    +  HP   V  R L +F+       
Sbjct: 145 NMVVFSLIALNASVLVSTIVITTSVILTFVP---VNFLHPIRVVRLRPLNFFV------- 194

Query: 101 IPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIY 139
              +CL  F     + ++S  QVCRW        G+ +Y
Sbjct: 195 FVCWCLLGF-----YALISNFQVCRWFSFAFSVCGIYLY 228


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 24.3 bits (51), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQP-----QKFGLGIKE 221
           +   +G+ ++     + + + + E     ++ ++  +Y L++  +        FG  I+E
Sbjct: 581 FSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQE 640

Query: 222 LWKIKPQYHRRGLALHSIGWPLDM 245
               K +YH+ G  LHSI  P+++
Sbjct: 641 SMDHK-RYHQIGDLLHSICEPIEI 663


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 23.9 bits (50), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI 60
          YDV++IG G AG  AA    ++    + +I  K++ +G+   + AI
Sbjct: 6  YDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSMSCNPAI 50


>gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 517

 Score = 23.9 bits (50), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 435 LEAASQHKKIDYPKPDGKLTFDIMSSLFL 463
           +E++ + K +D+PK +    +D ++ L L
Sbjct: 474 VESSVKDKYLDFPKKESSRVYDFLNKLVL 502


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.141    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,739
Number of Sequences: 1233
Number of extensions: 17616
Number of successful extensions: 48
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 11
length of query: 554
length of database: 328,796
effective HSP length: 79
effective length of query: 475
effective length of database: 231,389
effective search space: 109909775
effective search space used: 109909775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)