BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] (554 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 1144 bits (2960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/554 (100%), Positives = 554/554 (100%) Query: 1 MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI 60 MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI Sbjct: 1 MNSCDILHNKDVFEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI 60 Query: 61 IDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL 120 IDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL Sbjct: 61 IDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMDNKEHYIVSL 120 Query: 121 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPML 180 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPML Sbjct: 121 GQVCRWLKNKAEALGVEIYCGFTATEIYYGKKGEALGILTGEKGKNYDGTQGKHYIAPML 180 Query: 181 LLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIG 240 LLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIG Sbjct: 181 LLSKYMLVGEGACGSLTRQLIERYSLMDGRQPQKFGLGIKELWKIKPQYHRRGLALHSIG 240 Query: 241 WPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGER 300 WPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGER Sbjct: 241 WPLDMNTSGGGFVYHFDDNLVSIGFVLHLDYRNPWISAYEELQRFKTHPDIRIIFTEGER 300 Query: 301 LEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERL 360 LEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERL Sbjct: 301 LEYGARVISEGGWQSVPKLSFPGGSLIGCAAGFVNLLRIKGSHNAIISGMLAAEKIVERL 360 Query: 361 SNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMDIWIQKILGFS 420 SNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMDIWIQKILGFS Sbjct: 361 SNGKKHDDPIEIEDSWRQTQIGKDLWIIRNIKPLLSRFGVFIGLSLGLMDIWIQKILGFS 420 Query: 421 FLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPMHLLIKD 480 FLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPMHLLIKD Sbjct: 421 FLGTLKHHKMDSCSLEAASQHKKIDYPKPDGKLTFDIMSSLFLAKVKYVKEQPMHLLIKD 480 Query: 481 KDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEW 540 KDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEW Sbjct: 481 KDLQKKSELRIYSGPSMRYCPAGVYEWHQNNDENNYIIHAQNCIHCKACVIKDPNQNIEW 540 Query: 541 NPPQGGDGPHYVDM 554 NPPQGGDGPHYVDM Sbjct: 541 NPPQGGDGPHYVDM 554 >gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 481 Score = 35.8 bits (81), Expect = 0.002, Method: Compositional matrix adjust. Identities = 14/29 (48%), Positives = 22/29 (75%) Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVV 43 YD+++IG+GPAG AAIR Q+ +++V Sbjct: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 23/34 (67%) Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKS 48 YDV ++G GPAG A AI+ Q+ ++++ EK+ Sbjct: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 >gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 30.0 bits (66), Expect = 0.097, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 13 FEYDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI 60 +EYD+V+IGAG +G+ +A Q+ V I E+ G ++ G I Sbjct: 3 YEYDLVVIGAGSSGVRSARLAAQLGKK--VAICEEYRVGGTCVIRGCI 48 >gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 28.1 bits (61), Expect = 0.38, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 14/124 (11%) Query: 17 VVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAIIDPIGI------DSLL 70 ++IIG+GPAG AAI + L VI+ S G +++ +I + G D L+ Sbjct: 8 ILIIGSGPAGYTAAIYAAR--AMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM 65 Query: 71 PRWREDKGHPFHTVVKRDLYWFLNAQRSIQIPHFCLPDFMD--NKEHYIVSLGQVCRWLK 128 + R+ + F T + +DL ++ R P D + + +++ G +WL+ Sbjct: 66 EQMRQ-QAENFGTKIIQDLVVSVDLDRH---PFLVETQSGDLWHADAVVIATGSEVKWLR 121 Query: 129 NKAE 132 ++E Sbjct: 122 LESE 125 >gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 26.2 bits (56), Expect = 1.6, Method: Compositional matrix adjust. Identities = 11/17 (64%), Positives = 14/17 (82%) Query: 15 YDVVIIGAGPAGLAAAI 31 +DV+IIG+G AG AAI Sbjct: 4 FDVIIIGSGLAGSVAAI 20 >gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 15/99 (15%) Query: 41 SVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQ 100 ++V+ A + ++S +I I + +P + HP V R L +F+ Sbjct: 145 NMVVFSLIALNASVLVSTIVITTSVILTFVP---VNFLHPIRVVRLRPLNFFV------- 194 Query: 101 IPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIY 139 +CL F + ++S QVCRW G+ +Y Sbjct: 195 FVCWCLLGF-----YALISNFQVCRWFSFAFSVCGIYLY 228 >gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 702 Score = 24.3 bits (51), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 6/84 (7%) Query: 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQP-----QKFGLGIKE 221 + +G+ ++ + + + + E ++ ++ +Y L++ + FG I+E Sbjct: 581 FSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQE 640 Query: 222 LWKIKPQYHRRGLALHSIGWPLDM 245 K +YH+ G LHSI P+++ Sbjct: 641 SMDHK-RYHQIGDLLHSICEPIEI 663 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 15 YDVVIIGAGPAGLAAAIRCKQINPHLSVVILEKSAEVGAHILSGAI 60 YDV++IG G AG AA ++ + +I K++ +G+ + AI Sbjct: 6 YDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSMSCNPAI 50 >gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 517 Score = 23.9 bits (50), Expect = 7.2, Method: Compositional matrix adjust. Identities = 8/29 (27%), Positives = 18/29 (62%) Query: 435 LEAASQHKKIDYPKPDGKLTFDIMSSLFL 463 +E++ + K +D+PK + +D ++ L L Sbjct: 474 VESSVKDKYLDFPKKESSRVYDFLNKLVL 502 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.141 0.446 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 396,739 Number of Sequences: 1233 Number of extensions: 17616 Number of successful extensions: 48 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 11 length of query: 554 length of database: 328,796 effective HSP length: 79 effective length of query: 475 effective length of database: 231,389 effective search space: 109909775 effective search space used: 109909775 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 41 (20.4 bits)