RPSBLAST alignment of GI: 254781025 and protein with PDBid: 1f7d

>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A Length = 136
 Score =  119 bits (301), Expect = 2e-28
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 23  KTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVAC 82
           K S  +G DL AA    + + LLPG   +IP G  + +P GY G +  +S +        
Sbjct: 11  KRSEDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKG---L 63

Query: 83  LNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNE 142
               G ID  YRGEI +++IN+ +++  +M   +IAQLII      H  L     +  +E
Sbjct: 64  DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCK--HEVLEQGKVVMDSE 121

Query: 143 RNEKGFGSTGLY 154
           R + G+GSTG++
Sbjct: 122 RGDNGYGSTGVF 133