RPSBLAST alignment of GI: 254781025 and protein with PDBid: 1f7d
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A Length = 136
Score = 119 bits (301), Expect = 2e-28
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 23 KTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVAC 82
K S +G DL AA + + LLPG +IP G + +P GY G + +S +
Sbjct: 11 KRSEDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKG---L 63
Query: 83 LNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNE 142
G ID YRGEI +++IN+ +++ +M +IAQLII H L + +E
Sbjct: 64 DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCK--HEVLEQGKVVMDSE 121
Query: 143 RNEKGFGSTGLY 154
R + G+GSTG++
Sbjct: 122 RGDNGYGSTGVF 133