RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate
nucleotidohydrolase [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)



>3mdx_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; metal-binding,
           nucleotide metabolism, structural genomics; 1.45A
           {Brucella melitensis} PDB: 3mbq_A
          Length = 178

 Score =  162 bits (412), Expect = 2e-41
 Identities = 78/147 (53%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 6   IPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYE 65
           +  ++L HA G+ LP Y+T+GS+GMDL AA+ ED  + LLPG R+L+P G I+ IP GYE
Sbjct: 32  LGIIRLEHAKGLDLPAYETAGSAGMDLRAAVAEDRQIVLLPGRRTLVPTGLILEIPQGYE 91

Query: 66  GQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANS 125
            Q+R RSGLA   G+ CLN+PGTIDSDYRGE+K+LLINLG ++F I RGMRIAQ + A  
Sbjct: 92  VQIRPRSGLAFKNGITCLNTPGTIDSDYRGEVKVLLINLGDDDFRIERGMRIAQAVFAPV 151

Query: 126 VRAHPSLISAMPMGKNERNEKGFGSTG 152
           ++      + +   +  R   GFGSTG
Sbjct: 152 IQPKIEERAKIS--ETARGAGGFGSTG 176


>1euw_A Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly
           roll, mercury derivative; 1.05A {Escherichia coli} SCOP:
           b.85.4.1 PDB: 1dud_A 1dup_A 1eu5_A 1rn8_A* 1seh_A*
           2hr6_A* 2hrm_A* 1rnj_A* 1syl_A*
          Length = 152

 Score =  159 bits (404), Expect = 3e-40
 Identities = 61/153 (39%), Positives = 84/153 (54%), Gaps = 5/153 (3%)

Query: 1   MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
           M+ ID+  L        PLP Y TSGS+G+DL A L  ++ VEL PG  +L+P G  I I
Sbjct: 2   MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACL--NDAVELAPGDTTLVPTGLAIHI 59

Query: 61  PP-GYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119
                   +  RSGL   +G+   N  G IDSDY+G++ I + N GQ++F I  G RIAQ
Sbjct: 60  ADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQ 119

Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
           +I    V+A  +L+        +R E GFG +G
Sbjct: 120 MIFVPVVQAEFNLVEDFD--ATDRGEGGFGHSG 150


>3lqw_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; emerald
           biostructures, ALS collaborative crystallography; 1.30A
           {Entamoeba histolytica}
          Length = 163

 Score =  125 bits (315), Expect = 4e-30
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 18  PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALN 77
            +P   +  ++G+DL++    +    + P  R L+  G  + IP    G++  RS LAL 
Sbjct: 36  IVPTRGSKCAAGIDLYS----NTNFIIQPHERFLVSTGVSVQIPHQCYGRIAPRSSLALK 91

Query: 78  YGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMP 137
           YG+      G ID DYRGEIK++L N   E F   +G RIAQLII        S +  + 
Sbjct: 92  YGIDV--GAGVIDEDYRGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVKELN 149

Query: 138 MGKNERNEKGFGSTG 152
               +R   GFGSTG
Sbjct: 150 --TTDRGTNGFGSTG 162


>3h6x_A Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Streptococcus
           mutans}
          Length = 148

 Score =  123 bits (309), Expect = 2e-29
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 19  LPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNY 78
           LP+ +T+ ++G DL  A    E  E+  G   L+P G    +  G    +  RS      
Sbjct: 19  LPKRETAHAAGYDLKVA----ERTEISAGAIVLVPTGVKAYMQVGEVLYLFDRSSNPRKK 74

Query: 79  GVACLNSPGTIDSDY------RGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSL 132
           G+  +NS G ID DY       G I   + N+  +  ++  G R+ Q +    +      
Sbjct: 75  GLVLINSVGVIDGDYYNNPNNEGHIFAQMKNMTDQTVVLEAGERVVQGVFMPFLLIDGDK 134

Query: 133 ISAMPMGKNERNEKGFGSTG 152
            +            GFGSTG
Sbjct: 135 AT-------GTRTGGFGSTG 147


>2xcd_A Probable deoxyuridine 5'-triphosphate nucleotidoh YNCF; hydrolase;
           1.84A {Bacillus subtilis} PDB: 2xce_A* 2baz_A
          Length = 144

 Score =  121 bits (306), Expect = 5e-29
 Identities = 42/136 (30%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 18  PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALN 77
                K      +DL AA    E V +      L+P G  + +P GYE  V  RS    N
Sbjct: 14  QTRISKIEQGDWIDLRAA----EDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKN 69

Query: 78  YGVACLNSPGTIDSDYRGEIKILLINL-GQENFLIMRGMRIAQLIIANSVRAHPSLISAM 136
           +GV   NS G ID  Y+G+            +  I +G RI Q  I   + A   L+   
Sbjct: 70  FGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPA-VELVEVE 128

Query: 137 PMGKNERNEKGFGSTG 152
            +G  +R   G GSTG
Sbjct: 129 HLGNEDRG--GLGSTG 142


>3p48_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta
           barrel, DUMPPNP pyrophosphatase, phosphoprotein,
           structural genomics; HET: DUP; 1.67A {Saccharomyces
           cerevisiae}
          Length = 147

 Score =  121 bits (305), Expect = 7e-29
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 1   MQSIDIPFLQ-LPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIA 59
           M +     L+    +    +P   ++ ++G D++A+    + + +    + ++       
Sbjct: 1   MTATSDKVLKIQLRSASATVPTKGSATAAGYDIYAS----QDITIPAMGQGMVSTDISFT 56

Query: 60  IPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119
           +P G  G++  RSGLA+  G       G +D DY GE+K++L N  Q +F I +G R+AQ
Sbjct: 57  VPVGTYGRIAPRSGLAVKNG--IQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQ 114

Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
           LI+   V     ++    + ++ R   GFGSTG
Sbjct: 115 LILEKIVD-DAQIVVVDSLEESARGAGGFGSTG 146


>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein,
           hydrolase; 1.40A {Feline immunodeficiency virus} SCOP:
           b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A*
           1f7r_A* 1dut_A
          Length = 136

 Score =  119 bits (301), Expect = 2e-28
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 23  KTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVAC 82
           K S  +G DL AA    + + LLPG   +IP G  + +P GY G +  +S +        
Sbjct: 11  KRSEDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKG---L 63

Query: 83  LNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNE 142
               G ID  YRGEI +++IN+ +++  +M   +IAQLII      H  L     +  +E
Sbjct: 64  DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCK--HEVLEQGKVVMDSE 121

Query: 143 RNEKGFGSTGLY 154
           R + G+GSTG++
Sbjct: 122 RGDNGYGSTGVF 133


>3hza_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly roll,
           domain swapping, nucleotide metabolism; HET: DUP; 1.20A
           {Mycobacterium tuberculosis} PDB: 1six_A* 1slh_A*
           1sm8_A* 1smc_A* 1snf_A* 2py4_A* 3h6d_A* 3i93_A* 1mq7_A
           1sjn_A*
          Length = 174

 Score =  107 bits (269), Expect = 9e-25
 Identities = 59/143 (41%), Positives = 84/143 (58%), Gaps = 8/143 (5%)

Query: 16  GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLA 75
           G+PLP     G +G+DL++A    E VEL PG R+L+  G  +A+P G  G V  RSGLA
Sbjct: 33  GLPLPSRAHDGDAGVDLYSA----EDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLA 88

Query: 76  LNYGVACLNSPGTIDSDYRGEIKILLINLGQ-ENFLIMRGMRIAQLIIANSVRAHPSLIS 134
              G++ +NSPGTID+ YRGEIK+ LINL      ++ RG RIAQL++          +S
Sbjct: 89  TRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVS 148

Query: 135 AMP---MGKNERNEKGFGSTGLY 154
           +     +    R + G+GS+G +
Sbjct: 149 SFDEAGLASTSRGDGGWGSSGGH 171


>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase, monomer,
           nucleotide metabolism, structural proteomics in europe,
           spine; HET: UMP; 1.5A {Human herpesvirus 4} SCOP:
           b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A* 2we2_A*
           2we3_A*
          Length = 278

 Score =  102 bits (256), Expect = 3e-23
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 20  PEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYG 79
            +     +S   L   L     + L P   + +  G     P G+   +   +   +   
Sbjct: 14  DKLLLQQASVGRL--TLVNKTTILLRPMKTTTVDLGLYARPPEGHGLMLWGSTSRPV--- 68

Query: 80  VACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLII 122
               +  G ID  Y GE++++L N  + N  +        L  
Sbjct: 69  ---TSHVGIIDPGYTGELRLILQNQRRYNSTLRPSELKIHLAA 108



 Score = 99.3 bits (247), Expect = 3e-22
 Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 43/167 (25%)

Query: 17  IPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLAL 76
           I  P+Y   G  G+D+       + + L P     +         P +   +  RSGLA+
Sbjct: 123 INHPQY--PGDVGLDVSL----PKDLALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAM 176

Query: 77  NYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANS----------- 125
             G+             RG + + L N   +   + +  R  QL+  +            
Sbjct: 177 Q-GILVKPCRW-----RRGGVDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHLTSFYSPHS 230

Query: 126 --------------------VRAHPSLISAMPMGKNERNEKGFGSTG 152
                               V +     S +      R  +GFGS+G
Sbjct: 231 DAGVLGPRSLFRWASCTFEEVPSLAMGDSGLSEALEGRQGRGFGSSG 277


>1vyq_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; drug design,
           dutpase, deoxyuridine nucleotidohydrolase, malaria; HET:
           DUX; 2.4A {Plasmodium falciparum} SCOP: b.85.4.1
          Length = 173

 Score =  100 bits (249), Expect = 2e-22
 Identities = 35/160 (21%), Positives = 56/160 (35%), Gaps = 32/160 (20%)

Query: 18  PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYI---IAIPPGYEGQ------- 67
              +    G SG+DLF      +   L P   + +  G     +     Y  +       
Sbjct: 17  KNHKTHHEGDSGLDLFIV----KDEVLKPKSTTFVKLGIKAIALQYKSNYYYKCEKSENK 72

Query: 68  ---------------VRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIM 112
                          +  RS ++    +   NS G ID+ YRGEI   L N   + + I 
Sbjct: 73  KKDDDKSNIVNTSFLLFPRSSIS-KTPLRLANSIGLIDAGYRGEIIAALDNTSDQEYHIK 131

Query: 113 RGMRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
           +  ++ QL+          L+  +   +  R E GFGST 
Sbjct: 132 KNDKLVQLVSFTGEPLSFELVEELD--ETSRGEGGFGSTS 169


>2baz_A YOSS, hypothetical protein BSU20020; homotrimer, beta barrel,
           unknown function; 2.30A {Bacillus subtilis}
          Length = 142

 Score = 94.4 bits (234), Expect = 9e-21
 Identities = 43/136 (31%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 18  PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALN 77
                K      +DL AA    E V +      L+P G  + +P GYE  V  RS    N
Sbjct: 12  QTRINKMEQGDWIDLRAA----EDVAIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKN 67

Query: 78  YGVACLNSPGTIDSDYRGEIKILLINL-GQENFLIMRGMRIAQLIIANSVRAHPSLISAM 136
           +GV   NS G ID  Y+G+            +  I +G RI Q  I   + A   LI   
Sbjct: 68  FGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPA-VDLIEVD 126

Query: 137 PMGKNERNEKGFGSTG 152
            +G  +R   G GSTG
Sbjct: 127 RLGNGDRG--GHGSTG 140


>1dun_A Deoxyuridine 5'-triphosphate nucleoditohydrolase; dutpase, EIAV,
           trimeric enzyme, aspartyl protease; 1.90A {Equine
           infectious anemia virus} SCOP: b.85.4.1 PDB: 1duc_A
          Length = 134

 Score = 94.0 bits (233), Expect = 1e-20
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 20  PEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYG 79
            + K    +G DL         + +      +IP    I +PP   G V  +S       
Sbjct: 9   IKEKRDEDAGFDLCVP----YDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSS---MAK 61

Query: 80  VACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMG 139
              L + G ID  Y GEI+++  N+G+ N  ++ G + AQLII                 
Sbjct: 62  QGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENK-- 119

Query: 140 KNERNEKGFGSTGLY 154
            ++R +KGFGSTG++
Sbjct: 120 ISQRGDKGFGSTGVF 134


>3ca9_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase;
           HET: DUD; 3.00A {Paramecium bursaria chlorella
           VIRUSIL3A}
          Length = 165

 Score = 93.7 bits (232), Expect = 1e-20
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 1   MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
           M S+ +  L          P   + G++G D+ +     E V +    R  +  G  I +
Sbjct: 17  MSSLLVKKL----VESATTPMRGSEGAAGYDISSV----EDVVVPAMGRIAVSTGISIRV 68

Query: 61  PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120
           P G  G++  RSGLA  YG+  L     ID DY GE+K++L N  + +++I +G RIAQL
Sbjct: 69  PDGTYGRIAPRSGLAYKYGIDVLAG--VIDEDYTGEVKVILYNTTERDYIIKKGDRIAQL 126

Query: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTGLY 154
           I+   V    +++  +      R   GFGSTG+ 
Sbjct: 127 ILEQIVTPGVAVVLDLS--DTARGSGGFGSTGIL 158


>2d4n_A DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfizer monkey
           virus} PDB: 2d4m_A 2d4l_A*
          Length = 152

 Score = 90.1 bits (223), Expect = 2e-19
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 15  HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74
             I      T GS+G+DL +       +    G    +  G    +PP   G +  RS +
Sbjct: 26  QPISKLTRATPGSAGLDLCST--SHTVLTPEMG-PQALSTGIYGPLPPNTFGLILGRSSI 82

Query: 75  ALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLIS 134
            +         PG ID+DY GEIKI +         + +G RIAQLI+   +     +  
Sbjct: 83  TMKG---LQVYPGVIDNDYTGEIKI-MAKAVNNIVTVSQGNRIAQLILLPLIETDNKV-- 136

Query: 135 AMPMGKNERNEKGFGSTGLY 154
                +  R +  FGS+ +Y
Sbjct: 137 ----QQPYRGQGSFGSSDIY 152


>2ol1_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, jelly-roll,
           superfamily, dutpase-like; HET: UMP; 1.80A {Vaccinia
           virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_A
          Length = 147

 Score = 90.2 bits (223), Expect = 2e-19
 Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 9/151 (5%)

Query: 3   SIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPP 62
           +I+ P   +   +    P  ++ G++G DL++A        + PG R LI     +++P 
Sbjct: 5   NINSPVRFVKETNRAKSPTRQSPGAAGYDLYSA----YDYTIPPGERQLIKTDISMSMPK 60

Query: 63  GYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLII 122
              G++  RSGL+L          G ID DYRG I ++LIN G+  F +  G RIAQLI 
Sbjct: 61  FCYGRIAPRSGLSLKG---IDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIY 117

Query: 123 ANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153
                 +P L     +    R ++GFGSTGL
Sbjct: 118 QRIY--YPELEEVQSLDSTNRGDQGFGSTGL 146


>3ecy_A CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimeric assembly,
           hydrolase; 1.88A {Drosophila melanogaster}
          Length = 160

 Score = 89.8 bits (222), Expect = 2e-19
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 12/154 (7%)

Query: 1   MQSIDIPFLQL-PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIA 59
           + +  + F +L  +A     P   ++ ++G+DL +A      V +    ++++     + 
Sbjct: 17  IDTCVLRFAKLTENA---LEPVRGSAKAAGVDLRSA----YDVVVPARGKAIVKTDLQVQ 69

Query: 60  IPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119
           +P G  G+V  RSGLA+          G +D DYRG + ++L N    +F +  G RIAQ
Sbjct: 70  VPEGSYGRVAPRSGLAVKNF--IDVGAGVVDEDYRGNLGVVLFNHSDVDFEVKHGDRIAQ 127

Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153
            I          ++  +     ER E GFGSTG+
Sbjct: 128 FICERIFYPQLVMVDKLE--DTERGEAGFGSTGV 159


>3c2t_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase;
           HET: DUD; 3.00A {Paramecium bursaria chlorella
           VIRUSIL3A} PDB: 3c3i_A*
          Length = 141

 Score = 89.5 bits (221), Expect = 3e-19
 Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 1   MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
           M S+ +  L          P   + G++G D+ +     E V +    R  +  G  I +
Sbjct: 1   MSSLLVKKL----VESATTPMRGSEGAAGYDISSV----EDVVVPAMGRIAVSTGISIRV 52

Query: 61  PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120
           P G  G++  RSGLA  YG+      G ID DY GE+K++L N  + +++I +G RIAQL
Sbjct: 53  PDGTYGRIAPRSGLAYKYGID--VLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQL 110

Query: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153
           I+   V    +++  +      R   GFGSTG+
Sbjct: 111 ILEQIVTPGVAVVLDLS--DTARGSGGFGSTGI 141


>3f4f_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta
           barrel, UMP, product complex, DUTP pyrophosphatase,
           DITP; HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB:
           3hhq_A
          Length = 167

 Score = 89.1 bits (220), Expect = 4e-19
 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 7/137 (5%)

Query: 16  GIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLA 75
              +P   ++ ++G D++A+    + + +    + ++       +P G  G++  RSGLA
Sbjct: 37  SATVPTKGSATAAGYDIYAS----QDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLA 92

Query: 76  LNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISA 135
           +  G       G +D DY GE+K++L N  Q +F I +G R+AQLI+   V     ++  
Sbjct: 93  VKNG--IQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVD-DAQIVVV 149

Query: 136 MPMGKNERNEKGFGSTG 152
             + ++ R   GFGSTG
Sbjct: 150 DSLEESARGAGGFGSTG 166


>3ehw_A DUTP pyrophosphatase; jelly-roll, FULL-length C-terminal ARM,
           enzyme-ligand complex, hydrolase; HET: DUP; 1.80A {Homo
           sapiens} SCOP: b.85.4.1 PDB: 2hqu_A* 1q5h_A* 1q5u_X
          Length = 164

 Score = 86.8 bits (214), Expect = 2e-18
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 1   MQSIDIPFLQL-PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIA 59
           +  + + F +L  HA     P   ++ ++G DL++A        + P  ++++     IA
Sbjct: 21  VGGMQLRFARLSEHA---TAPTRGSARAAGYDLYSA----YDYTIPPMEKAVVKTDIQIA 73

Query: 60  IPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119
           +P G  G+V  RSGLA  + +      G ID DYRG + ++L N G+E F + +G RIAQ
Sbjct: 74  LPSGCYGRVAPRSGLAAKHFIDV--GAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQ 131

Query: 120 LIIANSVRAHPSLISAMPMGKNERNEKGFGSTG 152
           LI           + A+     ER   GFGSTG
Sbjct: 132 LICERIFYPEIEEVQALD--DTERGSGGFGSTG 162


>2p9o_A DUTP pyrophosphatase-like protein; dutpase, magnesium binding,
           hydrolase; 2.00A {Arabidopsis thaliana} PDB: 2pc5_A
          Length = 169

 Score = 81.8 bits (201), Expect = 6e-17
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 15/157 (9%)

Query: 1   MQSIDIPFLQL----PHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGY 56
             S   PF ++      A    +P   +  S+G DL +A       ++    ++LIP   
Sbjct: 24  GDSSPSPFFKVKKLSEKA---VIPTRGSPLSAGYDLSSA----VDSKVPARGKALIPTDL 76

Query: 57  IIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMR 116
            IA+P G   ++  RSGLA  + +      G ID+DYRG + ++L N    +F +  G R
Sbjct: 77  SIAVPEGTYARIAPRSGLAWKHSIDV--GAGVIDADYRGPVGVILFNHSDADFEVKFGDR 134

Query: 117 IAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153
           IAQLII   V   P ++    + +  R + GFGSTG+
Sbjct: 135 IAQLIIEKIV--TPDVVEVDDLDETVRGDGGFGSTGV 169


>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted
           beta barrel, hydrolase, nucleotide metabolism; HET: TTP
           1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB:
           2qlp_A*
          Length = 190

 Score = 55.6 bits (133), Expect = 4e-09
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 38  EDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEI 97
           + EP  L PG   L     +  +P    G++  +S L     +   ++ G ID  + G I
Sbjct: 68  DGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTH-STAGFIDPGFSGHI 126

Query: 98  KILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFGSTGL 153
            + L N+      +  GM+I QL +        +  S  P G +    K  G  G 
Sbjct: 127 TLELSNVANLPITLWPGMKIGQLCMLRL-----TSPSEHPYGSSRAGSKYQGQRGP 177


>2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical
           protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii}
           PDB: 2zdc_A
          Length = 169

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 36  LPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRG 95
           +   E   L      L        +P      +  +S LA       L  P  ID+ Y+G
Sbjct: 67  IEFKERAILSANHTYLFESCEEFNMPADLAVLITLKSTLA---RNGFLAPPTVIDAGYKG 123

Query: 96  EIKILLINLGQENFLIMRGMRIAQLIIA 123
           ++ + +  +   N  + +GM    LI  
Sbjct: 124 KVNVAITAV--YNSSLKKGMATHHLIFL 149


>1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide
           metabolism, trimer, hydrolase; HET: DUT; 1.80A
           {Escherichia coli} SCOP: b.85.4.1 PDB: 2v9x_A* 1xs6_A*
           1xs4_A* 2j4q_A* 2j4h_A*
          Length = 193

 Score = 48.6 bits (115), Expect = 5e-07
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 36  LPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRG 95
           L E E   L PG  +L      + +P    G +  RS LA   G+    +   ID  + G
Sbjct: 75  LDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLA-RLGLMVHVTAHRIDPGWSG 133

Query: 96  EIKILLINLGQENFLIMRGMRIAQLI 121
            I +   N G+    +  GM I  L 
Sbjct: 134 CIVLEFYNSGKLPLALRPGMLIGALS 159


>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural
           genomics, MCSG, PSI-2, protein structure initiative;
           2.20A {Agrobacterium tumefaciens str}
          Length = 370

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 37  PEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGV--ACLNSPG--TIDSD 92
                + L P    ++     + +PP Y  ++     L   + V  A    PG     + 
Sbjct: 248 RGRAELILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFRVHYAGFFDPGFGHAQAG 307

Query: 93  YRGEIKILLINLGQENFLIMRGMRIAQLI 121
             G   +L +   +  F++  G  + +L+
Sbjct: 308 GTGSRAVLEVRSHEVPFILEHGQIVGRLV 336


>1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase,
           DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A
           {Methanocaldococcus jannaschii} SCOP: b.85.4.1 PDB:
           1ogh_A 1pkj_A* 1pkk_A* 2hxb_A 2hxe_A 3gf0_A 2hxd_A*
          Length = 204

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 31  DLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTID 90
           +      E   V+ +     L      I +P     Q + RS L     +    + G ID
Sbjct: 77  EKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLG-RVFLTSHQTAGWID 135

Query: 91  SDYRGEIKILLINLGQENFLIMRGMRIAQLI 121
           + ++G+I + ++   +   ++ +  RI QLI
Sbjct: 136 AGFKGKITLEIVAFDK-PVILYKNQRIGQLI 165


>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH,
           niaid, SBRI, UW, decode, iodide phasing, hydrolase;
           2.10A {Anaplasma phagocytophilum HZ}
          Length = 206

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 3/64 (4%)

Query: 58  IAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRI 117
             IP         +S  A       + +   ++  + G + +   N       +      
Sbjct: 115 FNIPRDVMVVCVGKSTYA---RCGIVVNVTPLEPGWSGYVTLEFSNTSPLPVKVYAFEGA 171

Query: 118 AQLI 121
            Q +
Sbjct: 172 CQFL 175


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.0 bits (62), Expect = 0.90
 Identities = 24/154 (15%), Positives = 39/154 (25%), Gaps = 63/154 (40%)

Query: 2   QSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIP 61
            ++      +     IP+  Y T    G DL   L       +      ++     I   
Sbjct: 446 NNVSFNAKDI----QIPV--YDTF--DGSDL-RVLSGS----ISE---RIV---DCIIRL 486

Query: 62  PGYEGQVRSRSGLALNYGVACLNSPGT--IDSDYRGEIKILLINLGQENFLIMR-----G 114
           P             + +         T  +D    G        LG    L  R     G
Sbjct: 487 P-------------VKWETT-TQFKATHILDFG-PGGAS----GLGV---LTHRNKDGTG 524

Query: 115 MRIAQLIIANSVRAHPSLISAMPMGKNERNEKGF 148
           +R+               I A  +  N  ++ GF
Sbjct: 525 VRV---------------IVAGTLDINPDDDYGF 543



 Score = 26.1 bits (57), Expect = 3.6
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 31/108 (28%)

Query: 29   GMDLFAALPEDEPVELLPGMRSLIPG-----------GYIIAIPPGYEGQVRSRSGL--- 74
            GM +  A+P DE      GM ++ PG            Y++        +V  R+G    
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE-------RVGKRTGWLVE 1842

Query: 75   ALNYGVACLNSPGTIDSDY--RGEIKILLINLGQENFLIMRGMRIAQL 120
             +NY V         +  Y   G+++ L       NF+ ++ + I +L
Sbjct: 1843 IVNYNVE--------NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882


>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
           predicted glutamine amidotransferase, PSI; HET: MSE;
           1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
          Length = 219

 Score = 25.9 bits (56), Expect = 3.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 102 INLGQENFLIMRGMRIAQLIIANSVRAH 129
           ++LG EN      M+I  L +  +VR H
Sbjct: 11  VDLGTENLYFQSNMKIGVLGLQGAVREH 38


>3i6p_A Ethanolamine utilization protein EUTM; structural protein; 2.10A
           {Escherichia coli}
          Length = 105

 Score = 25.0 bits (55), Expect = 6.7
 Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 3/33 (9%)

Query: 114 GMRIAQLIIANSVRAHPSLISAMPMGKNERNEK 146
           G  ++  +I    R H  L    P+G    +  
Sbjct: 67  GELVSVHVIP---RPHGDLEEVFPIGLKGDSSN 96


>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin
          binding, STAM2, structural genomics, NPPSFA; NMR {Homo
          sapiens}
          Length = 163

 Score = 24.8 bits (54), Expect = 7.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 24 TSGSSGMDLFAALPEDEPVE 43
          +SGSSGM LF A P ++ VE
Sbjct: 2  SSGSSGMPLFTANPFEQDVE 21


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.141    0.412 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,364,956
Number of extensions: 62181
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 35
Length of query: 154
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 70
Effective length of database: 3,656,734
Effective search space: 255971380
Effective search space used: 255971380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)