RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate nucleotidohydrolase [Candidatus Liberibacter asiaticus str. psy62] (154 letters) >d1euwa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Escherichia coli [TaxId: 562]} Length = 136 Score = 111 bits (279), Expect = 2e-26 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 3/130 (2%) Query: 1 MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60 M+ ID+ L PLP Y TSGS+G+DL A L ++ VEL PG +L+P G I I Sbjct: 2 MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACL--NDAVELAPGDTTLVPTGLAIHI 59 Query: 61 P-PGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119 P + RSGL +G+ N G IDSDY+G++ I + N GQ++F I G RIAQ Sbjct: 60 ADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQ 119 Query: 120 LIIANSVRAH 129 +I V+A Sbjct: 120 MIFVPVVQAE 129 >d1sixa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Mycobacterium tuberculosis, rv2697c [TaxId: 1773]} Length = 153 Score = 98.7 bits (245), Expect = 2e-22 Identities = 58/139 (41%), Positives = 78/139 (56%), Gaps = 12/139 (8%) Query: 15 HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74 G+PLP G +G+DL++A E VEL PG R+L+ G +A+P G G V RSGL Sbjct: 21 PGLPLPSRAHDGDAGVDLYSA----EDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGL 76 Query: 75 ALNYGVACLNSPGTIDSDYRGEIKILLINLGQ-ENFLIMRGMRIAQLIIANSVRAHPSLI 133 A G++ +NSPGTID+ YRGEIK+ LINL ++ RG RIAQL++ + Sbjct: 77 ATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEV 136 Query: 134 SAMPMGKNERNEKGFGSTG 152 S +E G ST Sbjct: 137 S-------SFDEAGLASTS 148 >d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]} Length = 113 Score = 97.2 bits (242), Expect = 6e-22 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 8/110 (7%) Query: 15 HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74 + + +S L L + L P + + G P G+ + + Sbjct: 6 YAFQNDKLLLQQASVGRL--TLVNKTTILLRPMKTTTVDLGLYARPPEGHGLMLWGSTSR 63 Query: 75 ALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIAN 124 + + G ID Y GE++++L N + N + L Sbjct: 64 PV------TSHVGIIDPGYTGELRLILQNQRRYNSTLRPSELKIHLAAFR 107 >d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]} Length = 136 Score = 96.1 bits (239), Expect = 1e-21 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 12/108 (11%) Query: 17 IPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLAL 76 I P+Y G G+D+ + + L P + P + + RSGLA+ Sbjct: 3 INHPQY--PGDVGLDVSL----PKDLALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAM 56 Query: 77 NYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIAN 124 G+ RG + + L N + + + R QL+ + Sbjct: 57 Q-GILVKPCRW-----RRGGVDVSLTNFSDQTVFLNKYRRFCQLVYLH 98 >d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Feline immunodeficiency virus [TaxId: 11673]} Length = 118 Score = 88.0 bits (218), Expect = 3e-19 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 23 KTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVAC 82 K S +G DL AA + + LLPG +IP G + +P GY G + +S + Sbjct: 11 KRSEDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKG---L 63 Query: 83 LNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAH 129 G ID YRGEI +++IN+ +++ +M +IAQLII Sbjct: 64 DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCKHEV 110 >d1vyqa1 b.85.4.1 (A:1-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Plasmodium falciparum [TaxId: 5833]} Length = 159 Score = 86.3 bits (213), Expect = 1e-18 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 30/137 (21%) Query: 18 PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGY--------------------- 56 + G SG+DLF + L P + + G Sbjct: 17 KNHKTHHEGDSGLDLFIV----KDEVLKPKSTTFVKLGIKAIALQYKSNYYYKCEKSENK 72 Query: 57 ----IIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIM 112 + + RS ++ + NS G ID+ YRGEI L N + + I Sbjct: 73 KKDDDKSNIVNTSFLLFPRSSIS-KTPLRLANSIGLIDAGYRGEIIAALDNTSDQEYHIK 131 Query: 113 RGMRIAQLIIANSVRAH 129 + ++ QL+ Sbjct: 132 KNDKLVQLVSFTGEPLS 148 >d1duna_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Equine infectious anemia virus [TaxId: 11665]} Length = 120 Score = 80.0 bits (197), Expect = 8e-17 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 20 PEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYG 79 + K +G DL + + +IP I +PP G V +S Sbjct: 9 IKEKRDEDAGFDLCVP----YDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSS---MAK 61 Query: 80 VACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIA 123 L + G ID Y GEI+++ N+G+ N ++ G + AQLII Sbjct: 62 QGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIIL 105 >d3ehwa1 b.85.4.1 (A:24-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Human (Homo sapiens) [TaxId: 9606]} Length = 136 Score = 78.7 bits (193), Expect = 2e-16 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Query: 15 HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74 P ++ ++G DL++A + P ++++ IA+P G G+V RSGL Sbjct: 10 EHATAPTRGSARAAGYDLYSA----YDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGL 65 Query: 75 ALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLIS 134 A + + G ID DYRG + ++L N G+E F + +G RIAQLI + Sbjct: 66 AAKHFIDV--GAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQ 123 Query: 135 AMPMGKNERNEKGFG 149 A+ ER GFG Sbjct: 124 ALD--DTERGSGGFG 136 >d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]} Length = 193 Score = 51.3 bits (122), Expect = 4e-08 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 36 LPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRG 95 L E E L PG +L + +P G + RS LA G+ + ID + G Sbjct: 75 LDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLA-RLGLMVHVTAHRIDPGWSG 133 Query: 96 EIKILLINLGQENFLIMRGMRIAQLI 121 I + N G+ + GM I L Sbjct: 134 CIVLEFYNSGKLPLALRPGMLIGALS 159 >d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 182 Score = 50.2 bits (119), Expect = 8e-08 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 38 EDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEI 97 E V+ + L I +P Q + RS + + G ID+ ++G+I Sbjct: 84 EKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSS-LGRVFLTSHQTAGWIDAGFKGKI 142 Query: 98 KILLINLGQENFLIMRGMRIAQLIIA 123 + ++ + ++ + RI QLI + Sbjct: 143 TLEIVAFDK-PVILYKNQRIGQLIFS 167 >d2ebfx1 a.296.1.1 (X:575-874) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]} Length = 300 Score = 24.1 bits (52), Expect = 6.1 Identities = 14/71 (19%), Positives = 26/71 (36%) Query: 49 RSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQEN 108 R + I A GY G + + Y + ++ I ++Y N G + Sbjct: 141 RFALQDTVISAPFRGYAGAIPEAIDFPVKYVIEDISVFDKIQTNYWELPAYESWNEGSNS 200 Query: 109 FLIMRGMRIAQ 119 L+ +R +Q Sbjct: 201 ALLPGLLRESQ 211 >d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Length = 145 Score = 23.7 bits (51), Expect = 7.7 Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 9/93 (9%) Query: 42 VELLPGMRS-LIPGGYIIAIPPGYEG---QVRSRSGLALNYGVACLNSPGTIDSDYRGEI 97 VE+ PG L +G +R RSG C + G + + Sbjct: 19 VEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLR 78 Query: 98 KILLINLGQENFLIMRGMRIAQLIIANSVRAHP 130 LG+ RG+R A + HP Sbjct: 79 V-----LGKAGAARWRGVRPTVRGTAMNPVDHP 106 >d1m1fa_ b.34.6.2 (A:) Kid toxin protein (ParD) {Plasmid R1, from Escherichia coli [TaxId: 2482]} Length = 110 Score = 23.4 bits (50), Expect = 9.0 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 94 RGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFG 149 RGEI L++L +G R ++ + L +P+ + G Sbjct: 3 RGEI--WLVSLDPTAGHEQQGTRPVLIVTPAAFNRVTRLPVVVPVTSGGNFARTAG 56 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.141 0.412 Gapped Lambda K H 0.267 0.0488 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 575,478 Number of extensions: 25797 Number of successful extensions: 86 Number of sequences better than 10.0: 1 Number of HSP's gapped: 73 Number of HSP's successfully gapped: 13 Length of query: 154 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 76 Effective length of database: 1,336,656 Effective search space: 101585856 Effective search space used: 101585856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.2 bits)