RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate
nucleotidohydrolase [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)



>d1euwa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
           nucleotidohydrolase (dUTPase) {Escherichia coli [TaxId:
           562]}
          Length = 136

 Score =  111 bits (279), Expect = 2e-26
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 3/130 (2%)

Query: 1   MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
           M+ ID+  L        PLP Y TSGS+G+DL A L  ++ VEL PG  +L+P G  I I
Sbjct: 2   MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACL--NDAVELAPGDTTLVPTGLAIHI 59

Query: 61  P-PGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQ 119
             P     +  RSGL   +G+   N  G IDSDY+G++ I + N GQ++F I  G RIAQ
Sbjct: 60  ADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQ 119

Query: 120 LIIANSVRAH 129
           +I    V+A 
Sbjct: 120 MIFVPVVQAE 129


>d1sixa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
           nucleotidohydrolase (dUTPase) {Mycobacterium
           tuberculosis, rv2697c [TaxId: 1773]}
          Length = 153

 Score = 98.7 bits (245), Expect = 2e-22
 Identities = 58/139 (41%), Positives = 78/139 (56%), Gaps = 12/139 (8%)

Query: 15  HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74
            G+PLP     G +G+DL++A    E VEL PG R+L+  G  +A+P G  G V  RSGL
Sbjct: 21  PGLPLPSRAHDGDAGVDLYSA----EDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGL 76

Query: 75  ALNYGVACLNSPGTIDSDYRGEIKILLINLGQ-ENFLIMRGMRIAQLIIANSVRAHPSLI 133
           A   G++ +NSPGTID+ YRGEIK+ LINL      ++ RG RIAQL++          +
Sbjct: 77  ATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEV 136

Query: 134 SAMPMGKNERNEKGFGSTG 152
           S         +E G  ST 
Sbjct: 137 S-------SFDEAGLASTS 148


>d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr
           virus [TaxId: 10376]}
          Length = 113

 Score = 97.2 bits (242), Expect = 6e-22
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 8/110 (7%)

Query: 15  HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74
           +     +     +S   L   L     + L P   + +  G     P G+   +   +  
Sbjct: 6   YAFQNDKLLLQQASVGRL--TLVNKTTILLRPMKTTTVDLGLYARPPEGHGLMLWGSTSR 63

Query: 75  ALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIAN 124
            +       +  G ID  Y GE++++L N  + N  +        L    
Sbjct: 64  PV------TSHVGIIDPGYTGELRLILQNQRRYNSTLRPSELKIHLAAFR 107


>d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr
           virus [TaxId: 10376]}
          Length = 136

 Score = 96.1 bits (239), Expect = 1e-21
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 17  IPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLAL 76
           I  P+Y   G  G+D+       + + L P     +         P +   +  RSGLA+
Sbjct: 3   INHPQY--PGDVGLDVSL----PKDLALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAM 56

Query: 77  NYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIAN 124
             G+             RG + + L N   +   + +  R  QL+  +
Sbjct: 57  Q-GILVKPCRW-----RRGGVDVSLTNFSDQTVFLNKYRRFCQLVYLH 98


>d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
           nucleotidohydrolase (dUTPase) {Feline immunodeficiency
           virus [TaxId: 11673]}
          Length = 118

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 23  KTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVAC 82
           K S  +G DL AA    + + LLPG   +IP G  + +P GY G +  +S +        
Sbjct: 11  KRSEDAGYDLLAA----KEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKG---L 63

Query: 83  LNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAH 129
               G ID  YRGEI +++IN+ +++  +M   +IAQLII       
Sbjct: 64  DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILPCKHEV 110


>d1vyqa1 b.85.4.1 (A:1-159) Deoxyuridine 5'-triphosphate
           nucleotidohydrolase (dUTPase) {Plasmodium falciparum
           [TaxId: 5833]}
          Length = 159

 Score = 86.3 bits (213), Expect = 1e-18
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 30/137 (21%)

Query: 18  PLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGY--------------------- 56
              +    G SG+DLF      +   L P   + +  G                      
Sbjct: 17  KNHKTHHEGDSGLDLFIV----KDEVLKPKSTTFVKLGIKAIALQYKSNYYYKCEKSENK 72

Query: 57  ----IIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIM 112
                 +        +  RS ++    +   NS G ID+ YRGEI   L N   + + I 
Sbjct: 73  KKDDDKSNIVNTSFLLFPRSSIS-KTPLRLANSIGLIDAGYRGEIIAALDNTSDQEYHIK 131

Query: 113 RGMRIAQLIIANSVRAH 129
           +  ++ QL+        
Sbjct: 132 KNDKLVQLVSFTGEPLS 148


>d1duna_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
           nucleotidohydrolase (dUTPase) {Equine infectious anemia
           virus [TaxId: 11665]}
          Length = 120

 Score = 80.0 bits (197), Expect = 8e-17
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 20  PEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYG 79
            + K    +G DL         + +      +IP    I +PP   G V  +S       
Sbjct: 9   IKEKRDEDAGFDLCVP----YDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSS---MAK 61

Query: 80  VACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIA 123
              L + G ID  Y GEI+++  N+G+ N  ++ G + AQLII 
Sbjct: 62  QGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIIL 105


>d3ehwa1 b.85.4.1 (A:24-159) Deoxyuridine 5'-triphosphate
           nucleotidohydrolase (dUTPase) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 136

 Score = 78.7 bits (193), Expect = 2e-16
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 15  HGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGL 74
                P   ++ ++G DL++A        + P  ++++     IA+P G  G+V  RSGL
Sbjct: 10  EHATAPTRGSARAAGYDLYSA----YDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGL 65

Query: 75  ALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLIS 134
           A  + +      G ID DYRG + ++L N G+E F + +G RIAQLI           + 
Sbjct: 66  AAKHFIDV--GAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQ 123

Query: 135 AMPMGKNERNEKGFG 149
           A+     ER   GFG
Sbjct: 124 ALD--DTERGSGGFG 136


>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP
           deaminase) {Escherichia coli [TaxId: 562]}
          Length = 193

 Score = 51.3 bits (122), Expect = 4e-08
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 36  LPEDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRG 95
           L E E   L PG  +L      + +P    G +  RS LA   G+    +   ID  + G
Sbjct: 75  LDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLA-RLGLMVHVTAHRIDPGWSG 133

Query: 96  EIKILLINLGQENFLIMRGMRIAQLI 121
            I +   N G+    +  GM I  L 
Sbjct: 134 CIVLEFYNSGKLPLALRPGMLIGALS 159


>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 182

 Score = 50.2 bits (119), Expect = 8e-08
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 38  EDEPVELLPGMRSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEI 97
           E   V+ +     L      I +P     Q + RS       +    + G ID+ ++G+I
Sbjct: 84  EKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSS-LGRVFLTSHQTAGWIDAGFKGKI 142

Query: 98  KILLINLGQENFLIMRGMRIAQLIIA 123
            + ++   +   ++ +  RI QLI +
Sbjct: 143 TLEIVAFDK-PVILYKNQRIGQLIFS 167


>d2ebfx1 a.296.1.1 (X:575-874) Dermonecrotic toxin, ToxA
           {Pasteurella multocida [TaxId: 747]}
          Length = 300

 Score = 24.1 bits (52), Expect = 6.1
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 49  RSLIPGGYIIAIPPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQEN 108
           R  +    I A   GY G +       + Y +  ++    I ++Y         N G  +
Sbjct: 141 RFALQDTVISAPFRGYAGAIPEAIDFPVKYVIEDISVFDKIQTNYWELPAYESWNEGSNS 200

Query: 109 FLIMRGMRIAQ 119
            L+   +R +Q
Sbjct: 201 ALLPGLLRESQ 211


>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein
           L2 {Escherichia coli [TaxId: 562]}
          Length = 145

 Score = 23.7 bits (51), Expect = 7.7
 Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 42  VELLPGMRS-LIPGGYIIAIPPGYEG---QVRSRSGLALNYGVACLNSPGTIDSDYRGEI 97
           VE+ PG    L             +G    +R RSG        C  + G + +      
Sbjct: 19  VEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLR 78

Query: 98  KILLINLGQENFLIMRGMRIAQLIIANSVRAHP 130
                 LG+      RG+R      A +   HP
Sbjct: 79  V-----LGKAGAARWRGVRPTVRGTAMNPVDHP 106


>d1m1fa_ b.34.6.2 (A:) Kid toxin protein (ParD) {Plasmid R1, from
           Escherichia coli [TaxId: 2482]}
          Length = 110

 Score = 23.4 bits (50), Expect = 9.0
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 94  RGEIKILLINLGQENFLIMRGMRIAQLIIANSVRAHPSLISAMPMGKNERNEKGFG 149
           RGEI   L++L        +G R   ++   +      L   +P+       +  G
Sbjct: 3   RGEI--WLVSLDPTAGHEQQGTRPVLIVTPAAFNRVTRLPVVVPVTSGGNFARTAG 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.141    0.412 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 575,478
Number of extensions: 25797
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 13
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)