BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate
nucleotidohydrolase [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate nucleotidohydrolase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 154

 Score =  309 bits (792), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60
           MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI
Sbjct: 1   MQSIDIPFLQLPHAHGIPLPEYKTSGSSGMDLFAALPEDEPVELLPGMRSLIPGGYIIAI 60

Query: 61  PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120
           PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL
Sbjct: 61  PPGYEGQVRSRSGLALNYGVACLNSPGTIDSDYRGEIKILLINLGQENFLIMRGMRIAQL 120

Query: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTGLY 154
           IIANSVRAHPSLISAMPMGKNERNEKGFGSTGLY
Sbjct: 121 IIANSVRAHPSLISAMPMGKNERNEKGFGSTGLY 154


>gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 444

 Score = 24.3 bits (51), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)

Query: 73  GLALNYGVAC--LNSPGTI-DSDYRGEIKILLINLGQENFLIMRGMRI--------AQLI 121
           G+   YG+A    N  G + DSDY      ++  LG   FL+  G +I          LI
Sbjct: 132 GILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLI 191

Query: 122 IANSVRAH--PSLISAMPMGK 140
           I + + A    SL+S + +G+
Sbjct: 192 IFSGIVAGLPSSLVSVLELGR 212


>537021.9.peg.472_1 
          Length = 369

 Score = 21.9 bits (45), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 1   MQSIDIPFLQLPHAHGIPLPE 21
           M+++++  ++L HA  +P PE
Sbjct: 335 MEAVEMVLIRLAHAVQLPSPE 355


>gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 517

 Score = 21.6 bits (44), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 43  ELLPGMRSLIPGGYIIAIPPGYEGQVRSR 71
           +L PG   +   GYI+A+  G  G++  R
Sbjct: 287 DLHPGNLFVDSKGYIVAVDMGITGRLSKR 315


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.141    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,007
Number of Sequences: 1233
Number of extensions: 3859
Number of successful extensions: 11
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 154
length of database: 328,796
effective HSP length: 67
effective length of query: 87
effective length of database: 246,185
effective search space: 21418095
effective search space used: 21418095
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)