HHsearch alignment for GI: 254781026 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=97.69 E-value=6.3e-05 Score=49.68 Aligned_cols=93 Identities=28% Similarity=0.397 Sum_probs=58.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC----CCCHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434----568279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL----QVLPGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~----~~~pG~ 76 (186)
T Consensus 196 LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g-----~L-------------vAGakyRGeFEeRlk~vl~e 257 (786)
T COG0542 196 LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG-----SL-------------VAGAKYRGEFEERLKAVLKE 257 (786)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHH-----HH-------------HCCCCCCCCHHHHHHHHHHH
T ss_conf 7668988899999899999746999978758879971487-----67-------------46465357389999999999
Q ss_pred HHHCCCCEEEEECHHHC---------CHHHHHHHHHHHHCCCEE
Q ss_conf 98279988998038785---------988999999999719523
Q gi|254781026|r 77 DSLAHNGVLFLDEIPEF---------SPQTLNALRQPLETGECI 111 (186)
Q Consensus 77 i~lAh~GVLflDE~~e~---------~~~~l~~L~~~le~g~v~ 111 (186)
T Consensus 258 v~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~ 301 (786)
T COG0542 258 VEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR 301 (786)
T ss_pred HHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 85179849998235540577766666512566467787458737