HHsearch alignment for GI: 254781026 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=96.09 E-value=0.0055 Score=38.28 Aligned_cols=86 Identities=24% Similarity=0.293 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH-H
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456827998-2
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-L 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-l 79 (186)
T Consensus 110 l~G~~G~GKthLa~Ai~~~l--------~-------~~g---~sv~f~~~~el~-----~~Lk~~~~~-~~~~~~l~~~l 165 (254)
T COG1484 110 LLGPPGVGKTHLAIAIGNEL--------L-------KAG---ISVLFITAPDLL-----SKLKAAFDE-GRLEEKLLREL 165 (254)
T ss_pred EECCCCCCHHHHHHHHHHHH--------H-------HCC---CEEEEEEHHHHH-----HHHHHHHHC-CCHHHHHHHHH
T ss_conf 98999987999999999999--------9-------839---849998859999-----999998745-52689999887
Q ss_pred CCCCEEEEECHHH--CCHHHHHHHHHHHHCCCE
Q ss_conf 7998899803878--598899999999971952
Q gi|254781026|r 80 AHNGVLFLDEIPE--FSPQTLNALRQPLETGEC 110 (186)
Q Consensus 80 Ah~GVLflDE~~e--~~~~~l~~L~~~le~g~v 110 (186)
T Consensus 166 ~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~ 198 (254)
T COG1484 166 KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYE 198 (254)
T ss_pred HHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 528989982367766881558799999999997