HHsearch alignment for GI: 254781026 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].

Probab=99.21  E-value=3.2e-11  Score=86.61  Aligned_cols=104  Identities=23%  Similarity=0.286  Sum_probs=80.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCC-----C-------HHHCCCCC
Q ss_conf             77786059999999887488989788532300000027888756531112020377521-----0-------01102343
Q gi|254781026|r    2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV-----T-------IAALIGGG   69 (186)
Q Consensus         2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~-----~-------~~~l~gg~   69 (186)
T Consensus       170 ~GESGtGKElvAr~IH~~S~R~--------------------~------~PFVavNcaAip~~l~ESELFGhekGAFTGA  223 (464)
T COG2204         170 TGESGTGKELVARAIHQASPRA--------------------K------GPFIAVNCAAIPENLLESELFGHEKGAFTGA  223 (464)
T ss_pred             ECCCCCCHHHHHHHHHHHCCCC--------------------C------CCCEEEECCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             7789875899999998607445--------------------8------9925633464898887777614565676776


Q ss_pred             CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf             4568279982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r   70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP  133 (186)
Q Consensus        70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP  133 (186)
T Consensus       224 ~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~--~~~rvG~~~~i~vdvRiIaaT~~  285 (464)
T COG2204         224 ITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQER--EFERVGGNKPIKVDVRIIAATNR  285 (464)
T ss_pred             CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--EEEECCCCCEECEEEEEEEECCC
T ss_conf             434576157737965873231109999999999998707--06735888600001699960577