HHsearch alignment for GI: 254781026 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=97.49 E-value=0.00016 Score=47.25 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 45 L~GPpGvGKTT~a~~lAk~~g----~~viElNA--S---D~R~~~~I---~~~i--~~~~~~~sl~~------------~ 98 (403)
T PRK04195 45 LYGPPGVGKTSLAHALANDYG----WEVIELNA--S---DQRTKDVI---ERVA--GEASTSGSLFG------------A 98 (403)
T ss_pred EECCCCCCHHHHHHHHHHHHC----CCEEEECC--C---CCCCHHHH---HHHH--HHHHHCCCCCC------------C
T ss_conf 889399879999999999849----98599771--0---11478999---9999--98760688778------------8
Q ss_pred CCCEEEEECHHHCCH----HHHHHHHHHHHCC
Q ss_conf 998899803878598----8999999999719
Q gi|254781026|r 81 HNGVLFLDEIPEFSP----QTLNALRQPLETG 108 (186)
Q Consensus 81 h~GVLflDE~~e~~~----~~l~~L~~~le~g 108 (186)
T Consensus 99 ~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s 130 (403)
T PRK04195 99 KRKLILLDEVDGIHGNADRGGVRAILEIIKKA 130 (403)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 73499963434457244479999999998548