HHsearch alignment for GI: 254781026 and conserved domain: PRK05201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=98.62 E-value=4.4e-08 Score=68.19 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=53.9
Q ss_pred HHHHC-CCCEEEEECHHHCC------------HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 99827-99889980387859------------889999999997195230100307898470156752274658878898
Q gi|254781026|r 76 EDSLA-HNGVLFLDEIPEFS------------PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 76 ~i~lA-h~GVLflDE~~e~~------------~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
T Consensus 242 Ai~~aEq~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~-tK~G~V~TdhILFIasGAFh~s-------- 312 (442)
T PRK05201 242 AIERVEQNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVS-TKYGMVKTDHILFIASGAFHVA-------- 312 (442)
T ss_pred HHHHHHHCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCCC--------
T ss_conf 9998876170451146565303578898977330788878875388555-6777602550345504500147--------
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 87643899999999851224321004259983885668885
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
T Consensus 313 -K-----PSD-------LIPEl~GRlPv~v~L~~L~~~dl~ 340 (442)
T PRK05201 313 -K-----PSD-------LIPELQGRFPIRVELDALTEEDFV 340 (442)
T ss_pred -C-----CCH-------HHHHHCCCCEEEEECCCCCHHHHH
T ss_conf -8-----202-------249871755058882449999999