HHsearch alignment for GI: 254781026 and conserved domain: PRK05896
>PRK05896 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.58 E-value=6.8e-05 Score=49.48 Aligned_cols=98 Identities=22% Similarity=0.312 Sum_probs=51.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHH--H---HHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCH
Q ss_conf 977786059999999887488989788--5---323000000278887565311120203775210-0110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEE--S---LEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e--~---le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~p 74 (186)
T Consensus 43 FsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~-~I~~g~h~---DviEIda--asn~gIDeIReLi-e~~~~~P 115 (613)
T PRK05896 43 FSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE-SINTNQSV---DIVELDA--ASNNGVDEIRNII-DNINYLP 115 (613)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCCC---CEEEEEC--CCCCCHHHHHHHH-HHHCCCC
T ss_conf 55899848899999999996699999999888887899-98569999---8688406--5557889999999-9708587
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 7998279988998038785988999999999719
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
T Consensus 116 ---~~gkyKV~IIDEah~Ln~~AaNALLKtLEEP 146 (613)
T PRK05896 116 ---TTFKYKVYIIDEAHMLSTSAWNALLKTLEEP 146 (613)
T ss_pred ---CCCCCEEEEECCHHHCCHHHHHHHHHHCCCC
T ss_conf ---5799459998162217999999999853489