HHsearch alignment for GI: 254781026 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=97.45 E-value=6.6e-05 Score=49.55 Aligned_cols=126 Identities=19% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCHHHHH-
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210-01102343456827998-
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLPGEDS- 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~pG~i~- 78 (186)
T Consensus 106 l~G~~GtGKThLA~Alg~~--------A~~~-------G~---~v~f~-----~~~~L~~~L~~a~~~~---~~~~~l~r 159 (258)
T PRK09183 106 LLGPSGVGKTHLAIALGYE--------AVRA-------GI---KVRFT-----TAADLLLQLSTAQRQG---RYKTTLQR 159 (258)
T ss_pred EECCCCCCHHHHHHHHHHH--------HHHC-------CC---EEEEE-----EHHHHHHHHHHHHHCC---CHHHHHHH
T ss_conf 9899998689999999999--------9987-------99---39997-----8999999999998768---59999998
Q ss_pred -HCCCCEEEEECHH--HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -2799889980387--8598899999999971952301003078984701567522746588788988764389999999
Q gi|254781026|r 79 -LAHNGVLFLDEIP--EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATE 155 (186)
Q Consensus 79 -lAh~GVLflDE~~--e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~ 155 (186)
T Consensus 160 ~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye---~----------~S~IiTSn~~~~~W~~~f~~D---------- 216 (258)
T PRK09183 160 GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYE---K----------GAMILTSNLPFGQWDQTFAGD---------- 216 (258)
T ss_pred HHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHC---C----------CCEEEECCCCHHHHHHHCCCC----------
T ss_conf 74346514431331546888899999999999857---6----------778998899978985651686----------
Q ss_pred HHHHCCHHHHHCCC---EEEECCCC
Q ss_conf 98512243210042---59983885
Q gi|254781026|r 156 YQARISGPLMDRID---IRIAVPSR 177 (186)
Q Consensus 156 Y~~rls~plldR~D---l~v~~~~~ 177 (186)
T Consensus 217 --~~la~AilDRL~H~a~~i~l~Ge 239 (258)
T PRK09183 217 --AALTSAMLDRLLHHSHVVQIKGE 239 (258)
T ss_pred --HHHHHHHHHHHCCCEEEEEECCC
T ss_conf --99999999986046179974587