HHsearch alignment for GI: 254781026 and conserved domain: PRK11331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=98.60 E-value=2e-07 Score=64.29 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC------CCCCCCCH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102------34345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI------GGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~------gg~~~~~p 74 (186)
T Consensus 199 L~G~pGtGKT~lAk~lA~~l~-----------------g~~~--~~r---v~~VqfhpsysYEDfi~Gyrp~~~gf~~~~ 256 (459)
T PRK11331 199 LQGPPGVGKTFVARRLAYLLT-----------------GEKA--PQR---VNMVQFHQSYSYEDFIQGYRPNGVGFRRKD 256 (459)
T ss_pred EECCCCCCHHHHHHHHHHHHH-----------------CCCC--CCC---EEEEEECCCCCHHHHHCCCCCCCCCCEECC
T ss_conf 658999887899999999970-----------------7887--784---689983588661787646056888613268
Q ss_pred HHHHH---------CCCCEEEEECHHHCCHH-HHHHHHHHHHCC-C-----EEEHH---CCEEEEECCCEEEEEECCCC
Q ss_conf 79982---------79988998038785988-999999999719-5-----23010---03078984701567522746
Q gi|254781026|r 75 GEDSL---------AHNGVLFLDEIPEFSPQ-TLNALRQPLETG-E-----CIIAR---ANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 75 G~i~l---------Ah~GVLflDE~~e~~~~-~l~~L~~~le~g-~-----v~i~R---~g~~~~~Pa~f~Lvaa~NPc 134 (186)
T Consensus 257 G~f~~~~~~A~~~p~~~y~~iideinr~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNta 335 (459)
T PRK11331 257 GIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA 335 (459)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCC
T ss_conf 3699999999849898769998432033889999999999641256765225630036888533468865999850334