HHsearch alignment for GI: 254781026 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=97.25 E-value=0.00089 Score=42.94 Aligned_cols=109 Identities=26% Similarity=0.286 Sum_probs=57.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC----CHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCC-CCCCCCCH
Q ss_conf 97778605999999988748898----97885323000000278887565311120203775210-01102-34345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL----SLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALI-GGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l----~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~-gg~~~~~p 74 (186)
T Consensus 41 F~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~-~i~~g~~~D-viEiD----AASN~gVD~IR~l~e~v~y~P~~ 114 (363)
T TIGR02397 41 FSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCK-EINSGSSLD-VIEID----AASNNGVDDIRELRENVKYAPSK 114 (363)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHCCCCCC-EEEEC----CCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 0285997635589999998658878778777750227-765289866-68864----86568788999998730368755
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEE-EECCC
Q ss_conf 799827998899803878598899999999971952301003078984701567-52274
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLI-AAMNP 133 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lv-aa~NP 133 (186)
T Consensus 115 ~k-----YKvYIIDEVHMLS~~AFNALLKTLEEP-------------P~hV~FIlATTE~ 156 (363)
T TIGR02397 115 GK-----YKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVVFILATTEP 156 (363)
T ss_pred CC-----CCEEEEECCCCCCHHHHHHHHHHHCCC-------------CCCEEEEEECCCH
T ss_conf 44-----335887323028656899987652279-------------8762888734871