HHsearch alignment for GI: 254781026 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.63 E-value=1.3e-15 Score=112.46 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=102.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 600 f~GptGvGKTELAKaLAe~Lfg-------------~~~~LIriDMSEy~E~hsvsrLiGaPPGYVGy~egG~Lte~vr~~ 666 (852)
T TIGR03346 600 FLGPTGVGKTELAKALAEFLFD-------------DEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRK 666 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHHC-------------CCCCEEEECHHHHCCHHHHHHHCCCCCCCCCCCCCCEECHHHHHC
T ss_conf 8678877689999999999855-------------852069843044301224778558999767768787423989819
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCC--CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 998899803878598899999999971952301003078984701567522746588--788988764389999999985
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCG--MSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG--~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
T Consensus 667 PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~--NtiiimTSN~Ga~~i~~~~~~~~~~~~~~~~~~~~~~ 744 (852)
T TIGR03346 667 PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFR--NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRA 744 (852)
T ss_pred CCEEEEECCHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEE--EEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 88799853054307689999998823674307999888535--5689861540659997411455579999999999996
Q ss_pred HCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 12243210042599838856688
Q gi|254781026|r 159 RISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 159 rls~plldR~Dl~v~~~~~~~~~ 181 (186)
T Consensus 745 ~F~PEflnRid~ii~F~~L~~~~ 767 (852)
T TIGR03346 745 HFRPEFLNRIDEIVVFHPLGREQ 767 (852)
T ss_pred HCCHHHHHHCCEEEEECCCCHHH
T ss_conf 58998996378689837899999