HHsearch alignment for GI: 254781026 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0025 Score=40.34 Aligned_cols=93 Identities=28% Similarity=0.389 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 30 i~G~nGaGKSTLl~~l~gl~~~~~G~-------i-~~~g~~~~~~~~~---~~~~--~i~~v~QLSgGqkqrv~iA~al~ 96 (157)
T cd00267 30 LVGPNGSGKSTLLRAIAGLLKPTSGE-------I-LIDGKDIAKLPLE---ELRR--RIGYVPQLSGGQRQRVALARALL 96 (157)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCE-------E-EECCEECCCCCHH---HHHH--CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98788999899999995884799628-------9-9999999979999---9994--06087668869999999999997
Q ss_pred C-CCEEEEECHH-HCCHHHHHHHHHHHH
Q ss_conf 9-9889980387-859889999999997
Q gi|254781026|r 81 H-NGVLFLDEIP-EFSPQTLNALRQPLE 106 (186)
Q Consensus 81 h-~GVLflDE~~-e~~~~~l~~L~~~le 106 (186)
T Consensus 97 ~~p~ililDEPtsgLD~~~~~~l~~~i~ 124 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLR 124 (157)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 0999999969876689999999999999