HHsearch alignment for GI: 254781026 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.14 E-value=0.04 Score=33.22 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97778605999999988
Q gi|254781026|r 1 MIGPPGARKSMLASCLP 17 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~ 17 (186)
T Consensus 4 i~G~pGsGKT~~a~qfl 20 (187)
T cd01124 4 LSGGPGTGKTTFALQFL 20 (187)
T ss_pred EEECCCCCHHHHHHHHH
T ss_conf 87689999999999999