Query gi|254781026|ref|YP_003065439.1| hypothetical protein CLIBASIA_04640 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 186
No_of_seqs 141 out of 1975
Neff 6.3
Searched_HMMs 39220
Date Mon May 30 03:21:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781026.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00368 TIGR00368 Mg chelata 100.0 0 0 510.5 3.2 185 1-185 218-403 (505)
2 PRK09862 putative ATP-dependen 100.0 0 0 474.6 12.5 178 1-181 215-392 (506)
3 pfam01078 Mg_chelatase Magnesi 100.0 0 0 462.0 14.0 180 1-181 27-206 (207)
4 COG0606 Predicted ATPase with 100.0 0 0 441.8 9.6 184 1-184 203-386 (490)
5 PRK13407 bchI magnesium chelat 100.0 0 0 290.9 11.4 161 1-183 34-208 (334)
6 TIGR02442 Cob-chelat-sub cobal 100.0 2.9E-41 1.4E-45 262.9 6.1 159 2-185 31-213 (688)
7 TIGR02030 BchI-ChlI magnesium 100.0 9.5E-37 2.4E-41 236.3 8.3 162 2-185 31-216 (340)
8 CHL00081 chlI Mg-protoporyphyr 100.0 3.3E-35 8.3E-40 227.3 9.8 160 2-183 39-219 (347)
9 pfam00493 MCM MCM2/3/5 family. 100.0 4.7E-34 1.2E-38 220.5 10.4 144 1-175 62-205 (327)
10 COG1239 ChlI Mg-chelatase subu 100.0 1.5E-33 3.9E-38 217.5 10.1 159 2-184 44-225 (423)
11 smart00350 MCM minichromosome 100.0 3.2E-32 8.2E-37 209.8 10.2 145 1-176 241-385 (509)
12 COG1241 MCM2 Predicted ATPase 100.0 5.9E-31 1.5E-35 202.4 6.5 146 1-177 324-469 (682)
13 KOG0480 consensus 100.0 1.8E-29 4.5E-34 193.7 6.9 147 1-178 383-530 (764)
14 PTZ00111 DNA replication licen 100.0 1.1E-28 2.7E-33 189.1 6.8 144 1-174 498-641 (916)
15 KOG0478 consensus 99.9 1.8E-27 4.6E-32 181.9 7.8 147 1-178 467-614 (804)
16 KOG0482 consensus 99.9 6.2E-28 1.6E-32 184.6 4.2 152 1-183 380-534 (721)
17 TIGR02902 spore_lonB ATP-depen 99.9 1.1E-27 2.9E-32 183.1 4.2 155 1-180 91-266 (532)
18 TIGR02031 BchD-ChlD magnesium 99.9 1.3E-26 3.3E-31 176.9 9.1 161 3-183 24-211 (705)
19 KOG0477 consensus 99.9 1.1E-27 2.8E-32 183.2 3.4 143 1-174 487-629 (854)
20 TIGR02903 spore_lon_C ATP-depe 99.9 1.1E-24 2.8E-29 165.6 6.7 159 1-184 181-363 (616)
21 KOG0479 consensus 99.9 3.8E-24 9.8E-29 162.4 7.0 145 1-178 339-486 (818)
22 PRK13406 bchD magnesium chelat 99.9 1.3E-23 3.3E-28 159.3 8.6 140 2-178 31-170 (584)
23 KOG0481 consensus 99.9 3.4E-23 8.7E-28 156.8 5.9 145 1-177 369-514 (729)
24 PRK13765 ATP-dependent proteas 99.8 1.6E-20 4.2E-25 141.1 10.8 104 50-175 181-310 (637)
25 pfam07728 AAA_5 AAA domain (dy 99.8 1.5E-20 3.8E-25 141.3 9.1 128 1-168 4-139 (139)
26 pfam07726 AAA_3 ATPase family 99.8 3.3E-20 8.3E-25 139.3 7.9 126 1-169 4-130 (131)
27 COG0714 MoxR-like ATPases [Gen 99.8 1.9E-18 4.8E-23 129.0 8.1 141 1-177 48-189 (329)
28 TIGR02639 ClpA ATP-dependent C 99.7 1.8E-16 4.6E-21 117.4 7.8 156 1-180 532-695 (774)
29 PRK10865 protein disaggregatio 99.6 1.2E-15 3E-20 112.6 9.8 161 1-181 603-770 (857)
30 TIGR00635 ruvB Holliday juncti 99.6 2.2E-16 5.6E-21 116.9 5.7 118 1-175 35-157 (305)
31 TIGR03346 chaperone_ClpB ATP-d 99.6 1.3E-15 3.2E-20 112.5 8.3 166 1-181 600-767 (852)
32 CHL00095 clpC Clp protease ATP 99.6 2.6E-15 6.6E-20 110.6 9.7 166 1-181 544-725 (823)
33 COG0542 clpA ATP-binding subun 99.6 3E-15 7.5E-20 110.3 8.5 164 1-180 526-695 (786)
34 TIGR03345 VI_ClpV1 type VI sec 99.6 4.8E-15 1.2E-19 109.1 7.8 161 1-180 601-770 (852)
35 PRK00080 ruvB Holliday junctio 99.6 1.3E-14 3.3E-19 106.5 8.1 119 1-178 56-181 (328)
36 PRK11034 clpA ATP-dependent Cl 99.5 3.9E-14 9.9E-19 103.7 9.2 158 1-181 493-657 (758)
37 pfam05496 RuvB_N Holliday junc 99.5 1.8E-14 4.6E-19 105.7 7.2 122 1-181 55-183 (234)
38 pfam07724 AAA_2 AAA domain (Cd 99.5 2.9E-14 7.3E-19 104.5 7.1 151 1-171 8-168 (168)
39 COG1221 PspF Transcriptional r 99.5 4.7E-14 1.2E-18 103.2 4.2 143 1-178 106-250 (403)
40 COG2255 RuvB Holliday junction 99.4 6.9E-13 1.8E-17 96.4 9.4 113 1-175 57-179 (332)
41 COG3829 RocR Transcriptional r 99.4 7.9E-14 2E-18 101.9 4.2 120 1-135 273-392 (560)
42 PRK13341 recombination factor 99.4 2.5E-13 6.3E-18 99.0 6.3 58 83-179 111-170 (726)
43 PRK05022 anaerobic nitric oxid 99.4 5.4E-13 1.4E-17 97.0 7.7 104 2-133 215-330 (510)
44 PRK10820 DNA-binding transcrip 99.4 7.1E-13 1.8E-17 96.3 7.1 104 2-133 233-341 (513)
45 PRK13342 recombination factor 99.4 1.4E-12 3.7E-17 94.5 7.8 111 1-180 42-154 (417)
46 pfam00158 Sigma54_activat Sigm 99.4 1.4E-12 3.7E-17 94.5 6.9 105 2-134 28-144 (168)
47 PRK11361 acetoacetate metaboli 99.4 1.8E-12 4.5E-17 94.0 7.0 133 2-178 172-317 (457)
48 PRK11388 DNA-binding transcrip 99.4 2.3E-12 6E-17 93.3 7.6 106 1-134 353-467 (639)
49 CHL00181 cbbX CbbX; Provisiona 99.3 1.1E-12 2.9E-17 95.1 5.4 130 1-183 64-202 (287)
50 TIGR01817 nifA Nif-specific re 99.3 2E-12 5.1E-17 93.7 5.6 105 1-133 240-356 (574)
51 cd00009 AAA The AAA+ (ATPases 99.3 7E-12 1.8E-16 90.5 7.6 122 1-175 24-150 (151)
52 COG2256 MGS1 ATPase related to 99.3 5E-12 1.3E-16 91.3 5.8 106 1-175 53-162 (436)
53 PRK10923 glnG nitrogen regulat 99.3 1.3E-11 3.4E-16 88.8 6.9 110 2-134 167-283 (469)
54 TIGR02881 spore_V_K stage V sp 99.3 1E-11 2.6E-16 89.5 6.2 126 1-183 47-184 (261)
55 COG3604 FhlA Transcriptional r 99.3 9E-12 2.3E-16 89.9 5.5 109 2-133 252-367 (550)
56 PRK10365 transcriptional regul 99.2 1.2E-11 3.1E-16 89.0 5.4 106 1-134 167-284 (441)
57 COG2204 AtoC Response regulato 99.2 3.2E-11 8.1E-16 86.6 6.4 104 2-133 170-285 (464)
58 PRK13531 regulatory ATPase Rav 99.2 5.3E-12 1.4E-16 91.2 2.4 141 1-183 44-186 (498)
59 TIGR02974 phageshock_pspF psp 99.2 4.9E-12 1.3E-16 91.4 2.0 144 1-177 27-172 (349)
60 PRK11608 pspF phage shock prot 99.2 6.3E-11 1.6E-15 84.9 7.5 105 1-133 34-150 (325)
61 TIGR02915 PEP_resp_reg putativ 99.1 4.2E-11 1.1E-15 85.9 4.7 117 1-133 170-286 (451)
62 pfam00004 AAA ATPase family as 99.1 1.6E-10 4.2E-15 82.5 7.7 113 1-175 3-130 (131)
63 KOG1051 consensus 99.0 1E-09 2.7E-14 77.7 6.0 115 1-133 596-710 (898)
64 PRK10787 DNA-binding ATP-depen 99.0 2.1E-09 5.2E-14 76.0 6.8 128 1-180 354-496 (784)
65 TIGR02640 gas_vesic_GvpN gas v 99.0 1.7E-09 4.3E-14 76.5 6.3 157 1-182 26-192 (265)
66 COG1067 LonB Predicted ATP-dep 98.9 4.9E-09 1.3E-13 73.8 8.2 81 69-170 213-301 (647)
67 TIGR00763 lon ATP-dependent pr 98.9 1.9E-09 4.7E-14 76.3 5.2 123 1-171 455-594 (941)
68 CHL00195 ycf46 Ycf46; Provisio 98.9 6.1E-09 1.6E-13 73.2 7.0 112 1-177 264-392 (491)
69 KOG2028 consensus 98.9 1.4E-09 3.7E-14 76.9 3.8 84 1-112 167-253 (554)
70 TIGR01241 FtsH_fam ATP-depende 98.9 4E-09 1E-13 74.3 6.0 117 1-177 97-230 (505)
71 PRK03992 proteasome-activating 98.9 2.8E-09 7.2E-14 75.2 5.1 116 1-178 171-304 (390)
72 COG4650 RtcR Sigma54-dependent 98.9 6.7E-10 1.7E-14 78.9 1.7 113 1-132 213-331 (531)
73 CHL00176 ftsH cell division pr 98.9 7E-09 1.8E-13 72.9 6.8 117 1-177 215-347 (631)
74 TIGR02329 propionate_PrpR prop 98.8 1.9E-09 4.8E-14 76.2 3.3 110 2-132 348-471 (658)
75 COG0466 Lon ATP-dependent Lon 98.8 1.2E-08 3.1E-13 71.5 6.0 131 1-180 355-498 (782)
76 PRK10733 hflB ATP-dependent me 98.8 2.9E-08 7.5E-13 69.2 7.5 117 1-177 190-322 (644)
77 PRK05342 clpX ATP-dependent pr 98.8 8.2E-09 2.1E-13 72.5 4.4 152 1-183 114-318 (411)
78 TIGR01818 ntrC nitrogen regula 98.7 1.1E-08 2.9E-13 71.6 4.7 136 2-181 164-312 (471)
79 TIGR02880 cbbX_cfxQ CbbX prote 98.7 2.4E-08 6.1E-13 69.8 5.5 125 1-183 63-201 (284)
80 COG3284 AcoR Transcriptional a 98.7 6.9E-09 1.8E-13 72.9 2.5 107 1-132 341-455 (606)
81 smart00382 AAA ATPases associa 98.7 1.4E-08 3.5E-13 71.2 3.7 137 1-176 7-146 (148)
82 KOG0730 consensus 98.7 5.2E-08 1.3E-12 67.7 6.3 115 1-178 473-603 (693)
83 TIGR00382 clpX ATP-dependent C 98.6 4.1E-08 1E-12 68.4 5.1 102 1-132 157-282 (452)
84 KOG0734 consensus 98.6 9.4E-08 2.4E-12 66.3 6.7 114 1-177 342-471 (752)
85 COG3283 TyrR Transcriptional r 98.6 1.2E-07 2.9E-12 65.7 7.1 108 2-132 233-342 (511)
86 KOG0733 consensus 98.6 2.4E-07 6E-12 63.9 8.6 97 1-133 228-338 (802)
87 PRK05201 hslU ATP-dependent pr 98.6 4.4E-08 1.1E-12 68.2 4.7 86 76-183 242-340 (442)
88 KOG2004 consensus 98.6 8.7E-08 2.2E-12 66.5 6.2 120 1-171 443-578 (906)
89 COG0464 SpoVK ATPases of the A 98.6 9.6E-08 2.5E-12 66.2 6.4 117 1-180 281-413 (494)
90 PRK11331 5-methylcytosine-spec 98.6 2E-07 5.2E-12 64.3 7.6 112 1-134 199-335 (459)
91 COG5271 MDN1 AAA ATPase contai 98.6 2.1E-07 5.2E-12 64.3 7.2 90 72-180 1282-1377(4600)
92 PRK12402 replication factor C 98.6 3.7E-07 9.4E-12 62.8 7.9 65 80-181 124-188 (337)
93 COG5271 MDN1 AAA ATPase contai 98.5 8.7E-07 2.2E-11 60.6 9.4 134 1-170 1548-1684(4600)
94 KOG0742 consensus 98.5 3E-07 7.6E-12 63.3 6.5 60 84-179 446-517 (630)
95 COG1222 RPT1 ATP-dependent 26S 98.5 4.5E-07 1.2E-11 62.3 7.2 117 1-177 190-322 (406)
96 TIGR01242 26Sp45 26S proteasom 98.5 4.4E-07 1.1E-11 62.3 6.9 118 1-178 161-294 (364)
97 PRK00440 rfc replication facto 98.5 5.2E-07 1.3E-11 61.9 6.5 26 83-108 103-128 (318)
98 PHA02244 ATPase-like protein 98.4 1.6E-06 4E-11 59.1 8.2 127 1-169 124-254 (383)
99 COG1219 ClpX ATP-dependent pro 98.4 3.5E-07 9E-12 62.9 4.4 105 1-133 102-228 (408)
100 KOG0745 consensus 98.3 1.3E-06 3.2E-11 59.6 5.2 86 1-114 231-338 (564)
101 KOG0738 consensus 98.3 1.9E-06 4.8E-11 58.6 6.0 116 1-176 250-383 (491)
102 CHL00095 clpC Clp protease ATP 98.3 8.3E-07 2.1E-11 60.7 4.0 123 1-179 205-345 (823)
103 KOG0989 consensus 98.3 3.8E-06 9.6E-11 56.9 7.0 104 1-130 62-167 (346)
104 PRK06647 DNA polymerase III su 98.2 7.4E-06 1.9E-10 55.1 8.4 131 1-178 43-179 (560)
105 PRK06305 DNA polymerase III su 98.2 5.2E-06 1.3E-10 56.0 7.4 100 1-110 44-150 (462)
106 PRK05563 DNA polymerase III su 98.2 5.4E-06 1.4E-10 56.0 7.4 122 1-169 43-171 (541)
107 PRK11034 clpA ATP-dependent Cl 98.2 1.7E-06 4.4E-11 58.9 4.7 96 1-134 212-325 (758)
108 KOG0731 consensus 98.2 3.6E-06 9.2E-11 57.0 6.1 112 1-175 349-480 (774)
109 COG1223 Predicted ATPase (AAA+ 98.2 2.6E-06 6.7E-11 57.8 5.2 107 1-174 156-281 (368)
110 TIGR03346 chaperone_ClpB ATP-d 98.2 1.6E-06 4E-11 59.1 3.6 122 1-178 199-339 (852)
111 PRK10865 protein disaggregatio 98.2 1.4E-06 3.7E-11 59.3 3.2 122 1-178 204-344 (857)
112 KOG1808 consensus 98.2 2.4E-06 6.2E-11 58.0 4.4 127 1-170 445-580 (1856)
113 PRK06674 DNA polymerase III su 98.1 1.3E-05 3.4E-10 53.6 7.8 98 1-108 43-146 (563)
114 TIGR03345 VI_ClpV1 type VI sec 98.1 1.6E-06 4.1E-11 59.0 2.5 122 1-178 213-353 (852)
115 KOG0737 consensus 98.0 3.8E-06 9.7E-11 56.8 2.9 52 82-133 187-240 (386)
116 pfam08298 AAA_PrkA PrkA AAA do 98.0 1.2E-05 3.2E-10 53.8 5.5 83 74-175 226-308 (358)
117 smart00763 AAA_PrkA PrkA AAA d 98.0 9.2E-06 2.3E-10 54.6 4.8 83 74-175 229-311 (361)
118 COG0465 HflB ATP-dependent Zn 98.0 1.8E-05 4.5E-10 52.9 6.2 113 1-177 188-320 (596)
119 KOG0727 consensus 98.0 8.8E-06 2.2E-10 54.7 4.3 97 1-134 194-304 (408)
120 PRK07270 DNA polymerase III su 97.9 2.6E-05 6.7E-10 51.9 5.6 100 1-109 42-146 (557)
121 TIGR00764 lon_rel ATP-dependen 97.9 1.4E-05 3.7E-10 53.4 3.9 82 72-174 226-318 (662)
122 TIGR02639 ClpA ATP-dependent C 97.9 1.1E-05 2.9E-10 54.0 3.2 110 1-144 234-359 (774)
123 TIGR03015 pepcterm_ATPase puta 97.7 4.4E-05 1.1E-09 50.6 4.6 146 1-181 48-196 (269)
124 COG0542 clpA ATP-binding subun 97.7 6.3E-05 1.6E-09 49.7 4.8 93 1-111 196-301 (786)
125 PRK06645 DNA polymerase III su 97.7 0.00015 3.8E-09 47.5 6.5 100 1-110 48-157 (507)
126 COG0470 HolB ATPase involved i 97.7 0.00014 3.5E-09 47.7 6.1 60 79-174 107-166 (325)
127 PRK07994 DNA polymerase III su 97.6 0.00011 2.9E-09 48.2 5.2 113 1-134 43-160 (643)
128 PRK07764 DNA polymerase III su 97.6 7.3E-05 1.9E-09 49.3 4.2 101 1-110 42-149 (775)
129 PRK09112 DNA polymerase III su 97.6 4.1E-05 1E-09 50.8 2.8 28 82-109 142-169 (352)
130 PHA01747 putative ATP-dependen 97.6 5.7E-05 1.4E-09 50.0 3.5 140 3-181 197-349 (425)
131 KOG0652 consensus 97.6 9.7E-05 2.5E-09 48.6 4.6 97 1-134 210-320 (424)
132 PRK05896 DNA polymerase III su 97.6 6.8E-05 1.7E-09 49.5 3.7 98 1-108 43-146 (613)
133 KOG0739 consensus 97.6 7.8E-05 2E-09 49.2 3.9 18 1-18 171-188 (439)
134 TIGR02688 TIGR02688 conserved 97.5 0.00013 3.2E-09 47.9 4.7 128 2-171 223-357 (470)
135 KOG0735 consensus 97.5 0.00035 8.9E-09 45.3 6.8 94 1-133 706-813 (952)
136 PRK08853 DNA polymerase III su 97.5 8.6E-05 2.2E-09 48.9 3.7 97 1-108 43-146 (717)
137 PRK06526 transposase; Provisio 97.5 5.3E-05 1.4E-09 50.1 2.6 118 1-169 103-223 (254)
138 PRK08181 transposase; Validate 97.5 5.4E-05 1.4E-09 50.1 2.4 118 1-169 111-231 (269)
139 PRK04195 replication factor C 97.5 0.00016 4.2E-09 47.2 4.7 82 1-108 45-130 (403)
140 PRK09183 transposase/IS protei 97.4 6.6E-05 1.7E-09 49.6 2.2 126 1-177 106-239 (258)
141 PRK08451 DNA polymerase III su 97.4 0.0001 2.6E-09 48.5 3.0 99 1-108 41-144 (523)
142 PRK07003 DNA polymerase III su 97.4 0.00018 4.7E-09 47.0 4.2 101 1-112 43-150 (816)
143 KOG0740 consensus 97.4 0.0001 2.6E-09 48.4 2.7 19 1-19 191-209 (428)
144 PRK06872 DNA polymerase III su 97.4 0.00023 5.7E-09 46.4 4.4 111 1-134 43-160 (696)
145 PRK05648 DNA polymerase III su 97.4 0.00025 6.5E-09 46.1 4.3 111 1-134 43-160 (705)
146 PRK07940 DNA polymerase III su 97.3 0.00021 5.2E-09 46.7 3.7 100 1-110 44-149 (395)
147 PRK07133 DNA polymerase III su 97.3 0.00035 8.9E-09 45.3 4.4 97 1-108 45-145 (718)
148 PRK04132 replication factor C 97.3 0.00014 3.5E-09 47.7 2.4 86 1-108 51-137 (863)
149 pfam03969 AFG1_ATPase AFG1-lik 97.3 0.00032 8.1E-09 45.6 4.2 104 1-140 66-173 (361)
150 KOG0736 consensus 97.3 9.8E-05 2.5E-09 48.6 1.3 120 1-180 710-846 (953)
151 TIGR00390 hslU heat shock prot 97.3 0.00012 3E-09 48.1 1.7 78 80-181 267-359 (463)
152 PRK08691 DNA polymerase III su 97.3 0.00034 8.6E-09 45.4 4.0 100 1-110 43-148 (704)
153 TIGR02397 dnaX_nterm DNA polym 97.2 0.00089 2.3E-08 42.9 6.1 109 1-133 41-156 (363)
154 PRK03839 putative kinase; Prov 97.2 0.0006 1.5E-08 43.9 4.9 19 2-20 6-24 (180)
155 PRK07471 DNA polymerase III su 97.2 0.00059 1.5E-08 44.0 4.6 30 79-108 137-166 (363)
156 pfam05673 DUF815 Protein of un 97.2 0.00088 2.3E-08 43.0 5.4 88 80-180 106-196 (248)
157 PRK13695 putative NTPase; Prov 97.1 0.00076 1.9E-08 43.3 4.7 32 80-111 98-132 (174)
158 PRK05564 DNA polymerase III su 97.1 0.00036 9.1E-09 45.3 2.5 31 80-110 92-122 (313)
159 PRK08770 DNA polymerase III su 97.0 0.00079 2E-08 43.2 3.9 110 1-134 43-160 (663)
160 TIGR02173 cyt_kin_arch cytidyl 97.0 0.00034 8.6E-09 45.4 1.9 19 2-20 6-24 (173)
161 KOG0991 consensus 97.0 0.00078 2E-08 43.3 3.7 98 1-130 53-151 (333)
162 PRK09111 DNA polymerase III su 97.0 0.00078 2E-08 43.3 3.5 101 1-111 50-161 (600)
163 COG2812 DnaX DNA polymerase II 96.9 0.00071 1.8E-08 43.5 3.0 112 1-134 43-160 (515)
164 PRK08058 DNA polymerase III su 96.9 0.00098 2.5E-08 42.7 3.7 100 1-109 33-138 (329)
165 PRK12323 DNA polymerase III su 96.9 0.0012 3.2E-08 42.1 4.2 112 1-134 43-165 (721)
166 COG3854 SpoIIIAA ncharacterize 96.9 0.00079 2E-08 43.2 3.0 93 1-110 142-245 (308)
167 COG5245 DYN1 Dynein, heavy cha 96.9 0.00019 5E-09 46.8 -0.2 117 1-134 1499-1621(3164)
168 TIGR02858 spore_III_AA stage I 96.8 0.0013 3.4E-08 41.9 3.9 96 1-112 128-235 (282)
169 pfam05272 VirE Virulence-assoc 96.8 0.0018 4.5E-08 41.2 4.4 100 1-144 57-158 (198)
170 PRK08769 DNA polymerase III su 96.8 0.0012 3.1E-08 42.1 3.3 29 80-108 112-140 (319)
171 PRK11160 cysteine/glutathione 96.8 0.0031 7.9E-08 39.8 5.2 52 79-130 492-548 (575)
172 cd03223 ABCD_peroxisomal_ALDP 96.7 0.0093 2.4E-07 36.9 7.6 98 1-109 32-138 (166)
173 PRK05707 DNA polymerase III su 96.7 0.0069 1.8E-07 37.7 6.8 92 1-109 27-134 (328)
174 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.0025 6.3E-08 40.3 4.3 93 1-106 30-124 (157)
175 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0018 4.6E-08 41.1 3.6 87 1-109 30-122 (177)
176 KOG0728 consensus 96.7 0.0031 7.8E-08 39.8 4.6 120 1-179 186-320 (404)
177 TIGR01448 recD_rel helicase, R 96.7 0.002 5E-08 40.9 3.6 115 1-132 370-492 (769)
178 PRK10636 putative ABC transpor 96.6 0.0008 2E-08 43.2 1.5 23 1-23 32-54 (638)
179 pfam00910 RNA_helicase RNA hel 96.6 0.0027 6.9E-08 40.1 4.2 20 1-20 3-22 (105)
180 TIGR00972 3a0107s01c2 phosphat 96.6 0.00075 1.9E-08 43.4 1.3 21 1-21 32-55 (248)
181 COG1618 Predicted nucleotide k 96.6 0.0045 1.2E-07 38.8 5.3 37 75-111 92-133 (179)
182 COG0563 Adk Adenylate kinase a 96.6 0.00095 2.4E-08 42.8 1.8 21 1-21 5-25 (178)
183 PRK07132 DNA polymerase III su 96.6 0.0026 6.8E-08 40.2 4.1 30 81-110 92-121 (303)
184 PRK11819 putative ABC transpor 96.6 0.0013 3.3E-08 42.0 2.4 23 1-23 38-60 (556)
185 cd03230 ABC_DR_subfamily_A Thi 96.6 0.0013 3.3E-08 42.0 2.4 107 1-107 31-140 (173)
186 KOG0743 consensus 96.6 0.0011 2.8E-08 42.4 1.9 21 1-21 240-260 (457)
187 PRK11147 ABC transporter ATPas 96.5 0.0011 2.8E-08 42.4 1.7 22 1-22 34-55 (632)
188 PRK07399 DNA polymerase III su 96.5 0.0037 9.4E-08 39.3 4.3 67 80-161 123-195 (314)
189 KOG0726 consensus 96.5 0.0043 1.1E-07 38.9 4.4 98 1-135 224-335 (440)
190 PRK06871 DNA polymerase III su 96.4 0.0019 4.9E-08 41.0 2.4 96 1-109 28-134 (324)
191 KOG0729 consensus 96.4 0.0042 1.1E-07 39.0 4.1 92 1-120 216-320 (435)
192 KOG3595 consensus 96.4 0.0015 3.9E-08 41.5 1.6 56 84-141 195-256 (1395)
193 TIGR02868 CydC ABC transporter 96.3 0.0025 6.2E-08 40.4 2.3 25 1-25 392-416 (566)
194 PRK08118 topology modulation p 96.3 0.0019 4.8E-08 41.0 1.7 19 2-20 7-25 (167)
195 COG4988 CydD ABC-type transpor 96.3 0.016 4.1E-07 35.6 6.4 129 1-129 352-527 (559)
196 PRK05917 DNA polymerase III su 96.3 0.013 3.3E-07 36.1 5.9 31 80-110 94-124 (290)
197 KOG0990 consensus 96.3 0.0037 9.4E-08 39.3 3.0 29 82-110 132-160 (360)
198 PRK11174 cysteine/glutathione 96.3 0.0071 1.8E-07 37.6 4.5 52 79-130 501-557 (588)
199 PRK07261 topology modulation p 96.2 0.0021 5.4E-08 40.7 1.8 19 2-20 6-24 (171)
200 COG1485 Predicted ATPase [Gene 96.2 0.01 2.6E-07 36.8 5.2 99 1-136 70-173 (367)
201 cd03247 ABCC_cytochrome_bd The 96.2 0.00089 2.3E-08 42.9 -0.2 24 1-24 33-56 (178)
202 COG1936 Predicted nucleotide k 96.2 0.0054 1.4E-07 38.3 3.7 85 2-134 6-94 (180)
203 PRK08699 DNA polymerase III su 96.1 0.018 4.7E-07 35.2 6.1 98 1-110 26-142 (325)
204 KOG0733 consensus 96.1 0.0025 6.3E-08 40.3 1.6 116 1-179 550-683 (802)
205 COG1120 FepC ABC-type cobalami 96.1 0.0014 3.6E-08 41.8 0.3 25 1-25 33-57 (258)
206 COG1484 DnaC DNA replication p 96.1 0.0055 1.4E-07 38.3 3.2 86 1-110 110-198 (254)
207 COG3839 MalK ABC-type sugar tr 96.1 0.0026 6.5E-08 40.2 1.5 24 1-24 34-57 (338)
208 cd03299 ABC_ModC_like Archeal 96.0 0.0031 7.9E-08 39.8 1.7 24 1-24 30-53 (235)
209 KOG0741 consensus 96.0 0.003 7.7E-08 39.8 1.5 24 1-24 261-284 (744)
210 PRK00411 cdc6 cell division co 96.0 0.016 4.2E-07 35.5 5.2 19 2-20 61-79 (394)
211 PRK11248 tauB taurine transpor 96.0 0.0035 8.8E-08 39.5 1.7 25 1-25 32-56 (255)
212 COG1220 HslU ATP-dependent pro 95.9 0.0037 9.4E-08 39.3 1.7 80 80-181 249-340 (444)
213 TIGR01351 adk adenylate kinase 95.9 0.0036 9.2E-08 39.4 1.6 27 1-27 4-32 (232)
214 KOG2383 consensus 95.9 0.019 4.9E-07 35.1 5.3 27 1-27 119-145 (467)
215 cd03234 ABCG_White The White s 95.9 0.0038 9.6E-08 39.3 1.6 23 1-23 38-60 (226)
216 PRK10875 recD exonuclease V su 95.8 0.0029 7.4E-08 39.9 0.9 29 81-109 260-288 (607)
217 COG1116 TauB ABC-type nitrate/ 95.8 0.0039 1E-07 39.2 1.5 25 1-25 34-58 (248)
218 KOG1969 consensus 95.8 0.0082 2.1E-07 37.3 3.0 24 83-106 389-412 (877)
219 PRK13635 cbiO cobalt transport 95.8 0.0047 1.2E-07 38.7 1.7 24 1-24 38-61 (279)
220 cd03294 ABC_Pro_Gly_Bertaine T 95.8 0.0048 1.2E-07 38.7 1.7 24 1-24 55-78 (269)
221 cd03295 ABC_OpuCA_Osmoprotecti 95.8 0.0048 1.2E-07 38.6 1.7 24 1-24 32-55 (242)
222 TIGR03258 PhnT 2-aminoethylpho 95.8 0.0046 1.2E-07 38.7 1.6 23 1-23 36-58 (362)
223 PRK07993 DNA polymerase III su 95.7 0.041 1E-06 33.2 6.5 93 1-109 29-136 (334)
224 KOG1942 consensus 95.7 0.042 1.1E-06 33.1 6.5 72 80-175 295-366 (456)
225 pfam03215 Rad17 Rad17 cell cyc 95.7 0.007 1.8E-07 37.7 2.5 20 1-20 50-69 (490)
226 cd03300 ABC_PotA_N PotA is an 95.7 0.0052 1.3E-07 38.4 1.7 23 1-23 31-53 (232)
227 PRK09270 frcK putative fructos 95.6 0.0058 1.5E-07 38.2 1.8 20 2-21 40-59 (230)
228 cd03298 ABC_ThiQ_thiamine_tran 95.6 0.0056 1.4E-07 38.2 1.7 24 1-24 29-52 (211)
229 cd03301 ABC_MalK_N The N-termi 95.6 0.0055 1.4E-07 38.3 1.7 24 1-24 31-54 (213)
230 PRK13637 cbiO cobalt transport 95.6 0.0058 1.5E-07 38.1 1.8 24 1-24 38-61 (287)
231 cd03261 ABC_Org_Solvent_Resist 95.6 0.0057 1.5E-07 38.2 1.7 24 1-24 31-54 (235)
232 pfam05621 TniB Bacterial TniB 95.6 0.025 6.4E-07 34.4 5.0 110 1-117 66-188 (302)
233 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.6 0.0059 1.5E-07 38.1 1.7 24 1-24 35-58 (218)
234 PRK11144 modC molybdate transp 95.6 0.0059 1.5E-07 38.1 1.7 24 1-24 29-52 (352)
235 COG0488 Uup ATPase components 95.6 0.0055 1.4E-07 38.3 1.5 110 1-110 353-487 (530)
236 pfam00406 ADK Adenylate kinase 95.6 0.0071 1.8E-07 37.7 2.1 20 1-20 1-20 (186)
237 COG1224 TIP49 DNA helicase TIP 95.6 0.05 1.3E-06 32.7 6.4 77 81-182 291-368 (450)
238 cd01428 ADK Adenylate kinase ( 95.6 0.0056 1.4E-07 38.2 1.5 20 1-20 4-23 (194)
239 TIGR03415 ABC_choXWV_ATP choli 95.6 0.0061 1.5E-07 38.0 1.7 24 1-24 55-78 (382)
240 cd03293 ABC_NrtD_SsuB_transpor 95.6 0.0063 1.6E-07 38.0 1.7 24 1-24 35-58 (220)
241 PRK11701 phnK phosphonates tra 95.5 0.0061 1.5E-07 38.0 1.5 24 1-24 37-60 (258)
242 PRK11432 fbpC ferric transport 95.5 0.0067 1.7E-07 37.8 1.7 24 1-24 37-60 (351)
243 PRK05057 aroK shikimate kinase 95.5 0.0063 1.6E-07 38.0 1.5 31 1-31 9-41 (172)
244 cd03296 ABC_CysA_sulfate_impor 95.5 0.007 1.8E-07 37.7 1.7 24 1-24 33-56 (239)
245 COG3842 PotA ABC-type spermidi 95.5 0.0064 1.6E-07 37.9 1.5 24 1-24 36-59 (352)
246 PRK13640 cbiO cobalt transport 95.5 0.007 1.8E-07 37.7 1.7 22 1-22 39-60 (283)
247 PRK11650 ugpC glycerol-3-phosp 95.5 0.0069 1.8E-07 37.7 1.7 24 1-24 35-58 (358)
248 TIGR03265 PhnT2 putative 2-ami 95.5 0.007 1.8E-07 37.7 1.7 24 1-24 35-58 (353)
249 cd03235 ABC_Metallic_Cations A 95.5 0.0066 1.7E-07 37.8 1.6 24 1-24 30-53 (213)
250 cd03257 ABC_NikE_OppD_transpor 95.4 0.0073 1.9E-07 37.6 1.7 24 1-24 36-59 (228)
251 TIGR00678 holB DNA polymerase 95.4 0.036 9.1E-07 33.5 5.2 31 79-109 117-147 (216)
252 PRK00131 aroK shikimate kinase 95.4 0.0073 1.9E-07 37.6 1.6 30 1-30 9-40 (175)
253 PRK13642 cbiO cobalt transport 95.4 0.0078 2E-07 37.4 1.8 24 1-24 38-61 (277)
254 cd03229 ABC_Class3 This class 95.4 0.0077 2E-07 37.4 1.7 24 1-24 31-54 (178)
255 cd03256 ABC_PhnC_transporter A 95.4 0.0077 2E-07 37.4 1.7 24 1-24 32-55 (241)
256 COG2607 Predicted ATPase (AAA+ 95.4 0.036 9.2E-07 33.5 5.2 135 1-179 90-228 (287)
257 PRK10771 thiQ thiamine transpo 95.4 0.0076 1.9E-07 37.5 1.7 24 1-24 30-53 (233)
258 PRK10253 iron-enterobactin tra 95.4 0.0086 2.2E-07 37.2 1.9 24 1-24 38-61 (265)
259 cd03231 ABC_CcmA_heme_exporter 95.4 0.0071 1.8E-07 37.6 1.5 25 1-25 31-55 (201)
260 PRK13634 cbiO cobalt transport 95.4 0.008 2E-07 37.4 1.8 24 1-24 25-48 (276)
261 TIGR01187 potA polyamine ABC t 95.4 0.0083 2.1E-07 37.3 1.8 21 1-21 1-21 (331)
262 PRK11000 maltose/maltodextrin 95.4 0.0078 2E-07 37.4 1.7 24 1-24 34-57 (369)
263 PRK10851 sulfate/thiosulfate t 95.4 0.008 2E-07 37.4 1.7 24 1-24 33-56 (352)
264 PRK10070 glycine betaine trans 95.4 0.008 2E-07 37.3 1.7 24 1-24 59-82 (400)
265 PRK13646 cbiO cobalt transport 95.4 0.0081 2.1E-07 37.3 1.8 24 1-24 38-61 (286)
266 TIGR00602 rad24 checkpoint pro 95.4 0.0078 2E-07 37.4 1.7 110 1-113 123-243 (670)
267 PRK10247 putative ABC transpor 95.3 0.0075 1.9E-07 37.5 1.5 24 1-24 38-61 (225)
268 TIGR00968 3a0106s01 sulfate AB 95.3 0.0073 1.9E-07 37.6 1.4 49 64-113 134-185 (241)
269 PRK13632 cbiO cobalt transport 95.3 0.0084 2.1E-07 37.2 1.7 24 1-24 41-64 (273)
270 cd03297 ABC_ModC_molybdenum_tr 95.3 0.0084 2.2E-07 37.2 1.7 24 1-24 28-51 (214)
271 cd03262 ABC_HisP_GlnQ_permease 95.3 0.0086 2.2E-07 37.1 1.8 23 1-23 31-53 (213)
272 PRK09452 potA putrescine/sperm 95.3 0.0085 2.2E-07 37.2 1.7 24 1-24 48-71 (378)
273 PRK13539 cytochrome c biogenes 95.3 0.0085 2.2E-07 37.2 1.7 24 1-24 33-56 (206)
274 PRK13650 cbiO cobalt transport 95.3 0.009 2.3E-07 37.1 1.8 24 1-24 35-58 (276)
275 PTZ00088 adenylate kinase 1; P 95.3 0.0082 2.1E-07 37.3 1.5 29 1-29 5-35 (225)
276 PRK06090 DNA polymerase III su 95.3 0.014 3.7E-07 35.9 2.8 102 1-110 30-137 (319)
277 cd03237 ABC_RNaseL_inhibitor_d 95.3 0.0088 2.2E-07 37.1 1.7 24 1-24 30-53 (246)
278 PRK12377 putative replication 95.3 0.0078 2E-07 37.4 1.4 124 1-178 106-236 (248)
279 PRK00279 adk adenylate kinase; 95.2 0.0086 2.2E-07 37.2 1.5 20 1-20 5-24 (215)
280 PRK13547 hmuV hemin importer A 95.2 0.0093 2.4E-07 37.0 1.7 23 1-23 32-54 (273)
281 PRK13947 shikimate kinase; Pro 95.2 0.0077 2E-07 37.4 1.3 32 1-32 6-39 (171)
282 PRK13543 cytochrome c biogenes 95.2 0.0087 2.2E-07 37.1 1.5 24 1-24 42-65 (214)
283 PRK02496 adk adenylate kinase; 95.2 0.0091 2.3E-07 37.0 1.6 20 1-20 6-25 (185)
284 PRK11831 putative ABC transpor 95.2 0.0093 2.4E-07 37.0 1.6 24 1-24 39-62 (269)
285 TIGR00750 lao LAO/AO transport 95.2 0.0086 2.2E-07 37.1 1.4 20 1-20 43-62 (333)
286 COG0703 AroK Shikimate kinase 95.2 0.011 2.9E-07 36.4 2.0 33 1-33 7-41 (172)
287 COG1122 CbiO ABC-type cobalt t 95.2 0.0089 2.3E-07 37.1 1.5 24 1-24 35-58 (235)
288 PRK10418 nikD nickel transport 95.2 0.0097 2.5E-07 36.9 1.7 23 1-23 34-56 (254)
289 TIGR01243 CDC48 AAA family ATP 95.2 0.0096 2.4E-07 36.9 1.6 17 1-17 580-596 (980)
290 KOG2170 consensus 95.2 0.023 5.9E-07 34.6 3.6 109 1-130 115-223 (344)
291 PRK13544 consensus 95.2 0.0087 2.2E-07 37.1 1.4 24 1-24 32-55 (208)
292 PRK13645 cbiO cobalt transport 95.1 0.01 2.6E-07 36.7 1.7 25 1-25 42-66 (289)
293 PRK13644 cbiO cobalt transport 95.1 0.01 2.6E-07 36.7 1.7 24 1-24 33-56 (274)
294 PRK13546 teichoic acids export 95.1 0.0098 2.5E-07 36.8 1.6 24 1-24 55-78 (264)
295 PRK11231 fecE iron-dicitrate t 95.1 0.01 2.6E-07 36.7 1.7 24 1-24 33-56 (255)
296 PRK13538 cytochrome c biogenes 95.1 0.0099 2.5E-07 36.8 1.6 24 1-24 32-55 (204)
297 pfam05729 NACHT NACHT domain. 95.1 0.0092 2.4E-07 37.0 1.4 18 1-18 5-22 (165)
298 cd03233 ABC_PDR_domain1 The pl 95.1 0.0097 2.5E-07 36.9 1.4 23 1-23 38-60 (202)
299 PRK11264 putative amino-acid A 95.1 0.011 2.7E-07 36.6 1.6 24 1-24 32-55 (248)
300 cd03226 ABC_cobalt_CbiO_domain 95.1 0.01 2.5E-07 36.8 1.5 23 1-23 31-53 (205)
301 PRK10419 nikE nickel transport 95.1 0.011 2.9E-07 36.5 1.7 23 1-23 43-65 (266)
302 PRK09493 glnQ glutamine ABC tr 95.0 0.011 2.9E-07 36.5 1.7 25 1-25 32-56 (240)
303 PRK10895 putative ABC transpor 95.0 0.011 2.7E-07 36.6 1.6 24 1-24 34-57 (241)
304 KOG0744 consensus 95.0 0.01 2.6E-07 36.7 1.5 127 1-180 182-330 (423)
305 PRK10584 putative ABC transpor 95.0 0.012 3E-07 36.4 1.7 24 1-24 41-64 (228)
306 PRK13636 cbiO cobalt transport 95.0 0.012 3E-07 36.4 1.6 24 1-24 37-60 (285)
307 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.0 0.012 3E-07 36.4 1.6 24 1-24 53-76 (224)
308 PRK13540 cytochrome c biogenes 95.0 0.011 2.9E-07 36.5 1.5 24 1-24 32-55 (200)
309 PRK13652 cbiO cobalt transport 95.0 0.012 3.1E-07 36.3 1.7 24 1-24 35-58 (277)
310 PRK11607 potG putrescine trans 95.0 0.012 3.2E-07 36.2 1.7 24 1-24 50-73 (377)
311 pfam03266 DUF265 Protein of un 95.0 0.01 2.7E-07 36.7 1.3 31 80-110 94-127 (168)
312 PRK10908 cell division protein 95.0 0.013 3.2E-07 36.2 1.7 24 1-24 33-56 (222)
313 cd03236 ABC_RNaseL_inhibitor_d 95.0 0.012 3E-07 36.4 1.6 24 1-24 31-54 (255)
314 PRK10938 putative molybdenum t 94.9 0.014 3.5E-07 36.0 1.9 25 1-25 34-58 (490)
315 cd00464 SK Shikimate kinase (S 94.9 0.012 2.9E-07 36.4 1.5 30 1-30 4-35 (154)
316 COG1123 ATPase components of v 94.9 0.012 2.9E-07 36.4 1.5 23 1-23 322-344 (539)
317 PRK13639 cbiO cobalt transport 94.9 0.013 3.4E-07 36.1 1.7 24 1-24 33-56 (275)
318 cd03264 ABC_drug_resistance_li 94.9 0.013 3.2E-07 36.2 1.6 24 1-24 30-53 (211)
319 pfam03029 ATP_bind_1 Conserved 94.9 0.014 3.5E-07 36.0 1.8 23 1-23 1-23 (234)
320 PRK13651 cobalt transporter AT 94.9 0.012 3.2E-07 36.2 1.6 24 1-24 38-61 (304)
321 PRK13633 cobalt transporter AT 94.9 0.013 3.4E-07 36.1 1.7 24 1-24 42-65 (281)
322 cd03290 ABCC_SUR1_N The SUR do 94.9 0.014 3.5E-07 36.0 1.7 24 1-24 32-55 (218)
323 PRK11308 dppF dipeptide transp 94.9 0.013 3.3E-07 36.1 1.6 23 1-23 46-68 (327)
324 KOG0736 consensus 94.9 0.0092 2.3E-07 37.0 0.8 108 1-134 436-543 (953)
325 PRK13648 cbiO cobalt transport 94.8 0.013 3.3E-07 36.1 1.6 24 1-24 40-63 (269)
326 cd03246 ABCC_Protease_Secretio 94.8 0.013 3.4E-07 36.0 1.6 104 1-106 33-140 (173)
327 COG3172 NadR Predicted ATPase/ 94.8 0.34 8.8E-06 27.8 8.8 154 1-179 13-167 (187)
328 PRK11247 ssuB aliphatic sulfon 94.8 0.014 3.6E-07 35.9 1.7 24 1-24 43-66 (257)
329 PRK13548 hmuV hemin importer A 94.8 0.013 3.3E-07 36.1 1.5 24 1-24 33-56 (257)
330 COG4088 Predicted nucleotide k 94.8 0.011 2.7E-07 36.6 1.0 20 1-20 6-25 (261)
331 KOG3347 consensus 94.8 0.014 3.5E-07 35.9 1.6 19 2-20 13-31 (176)
332 PRK09473 oppD oligopeptide tra 94.8 0.015 3.7E-07 35.8 1.7 23 1-23 47-69 (330)
333 PRK11629 lolD lipoprotein tran 94.8 0.014 3.6E-07 35.9 1.6 24 1-24 40-63 (233)
334 cd03225 ABC_cobalt_CbiO_domain 94.8 0.014 3.6E-07 35.9 1.6 24 1-24 32-55 (211)
335 PRK06964 DNA polymerase III su 94.8 0.085 2.2E-06 31.3 5.6 29 80-108 131-159 (342)
336 PRK07952 DNA replication prote 94.8 0.013 3.4E-07 36.0 1.5 124 1-177 101-231 (242)
337 PRK10575 iron-hydroxamate tran 94.8 0.015 3.7E-07 35.8 1.6 24 1-24 42-65 (265)
338 PRK09544 znuC high-affinity zi 94.7 0.014 3.6E-07 35.9 1.5 24 1-24 35-58 (251)
339 PRK13631 cbiO cobalt transport 94.7 0.014 3.6E-07 35.9 1.6 24 1-24 57-80 (320)
340 PRK09984 phosphonate/organopho 94.7 0.015 3.8E-07 35.8 1.6 22 1-22 35-56 (262)
341 TIGR03608 L_ocin_972_ABC putat 94.7 0.015 3.8E-07 35.7 1.6 24 1-24 29-52 (206)
342 PRK13638 cbiO cobalt transport 94.7 0.015 3.7E-07 35.8 1.6 24 1-24 32-55 (271)
343 PRK13542 consensus 94.7 0.014 3.5E-07 35.9 1.5 24 1-24 49-72 (224)
344 TIGR03499 FlhF flagellar biosy 94.7 0.014 3.7E-07 35.8 1.5 12 2-13 200-211 (282)
345 cd03213 ABCG_EPDR ABCG transpo 94.7 0.015 3.8E-07 35.8 1.6 22 1-22 40-61 (194)
346 PRK13946 shikimate kinase; Pro 94.7 0.012 3.2E-07 36.2 1.2 31 1-31 25-57 (195)
347 COG4930 Predicted ATP-dependen 94.7 0.031 8E-07 33.8 3.2 105 57-172 254-361 (683)
348 PRK13643 cbiO cobalt transport 94.7 0.016 4.1E-07 35.6 1.7 24 1-24 37-60 (288)
349 PRK13949 shikimate kinase; Pro 94.7 0.015 3.9E-07 35.7 1.6 30 1-30 6-37 (169)
350 PRK13649 cbiO cobalt transport 94.7 0.016 4E-07 35.6 1.7 24 1-24 38-61 (280)
351 PRK03731 aroL shikimate kinase 94.7 0.014 3.5E-07 36.0 1.3 31 1-31 7-39 (172)
352 cd03253 ABCC_ATM1_transporter 94.7 0.013 3.4E-07 36.0 1.2 23 1-23 32-54 (236)
353 PRK13641 cbiO cobalt transport 94.6 0.017 4.3E-07 35.4 1.7 24 1-24 38-61 (286)
354 PRK10619 histidine/lysine/argi 94.6 0.017 4.3E-07 35.5 1.7 24 1-24 36-59 (257)
355 cd03248 ABCC_TAP TAP, the Tran 94.6 0.017 4.3E-07 35.5 1.7 24 1-24 45-68 (226)
356 PRK13549 xylose transporter AT 94.6 0.017 4.4E-07 35.4 1.7 23 1-23 36-58 (513)
357 COG1102 Cmk Cytidylate kinase 94.6 0.017 4.3E-07 35.4 1.7 19 2-20 6-24 (179)
358 cd01882 BMS1 Bms1. Bms1 is an 94.6 0.017 4.3E-07 35.4 1.5 18 2-19 45-62 (225)
359 COG1134 TagH ABC-type polysacc 94.5 0.016 4.1E-07 35.6 1.4 25 1-25 58-82 (249)
360 KOG0055 consensus 94.5 0.056 1.4E-06 32.4 4.2 55 74-129 501-560 (1228)
361 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.02 5.2E-07 35.0 1.9 24 1-24 39-62 (207)
362 cd02020 CMPK Cytidine monophos 94.5 0.022 5.5E-07 34.8 2.0 19 2-20 5-23 (147)
363 pfam06068 TIP49 TIP49 C-termin 94.5 0.1 2.7E-06 30.8 5.5 71 80-175 274-344 (395)
364 PRK13948 shikimate kinase; Pro 94.5 0.018 4.6E-07 35.3 1.6 31 1-31 15-47 (182)
365 cd03258 ABC_MetN_methionine_tr 94.5 0.019 4.8E-07 35.2 1.7 23 1-23 36-58 (233)
366 COG1124 DppF ABC-type dipeptid 94.4 0.018 4.5E-07 35.3 1.5 23 1-23 38-60 (252)
367 TIGR01189 ccmA heme ABC export 94.4 0.022 5.7E-07 34.7 1.9 114 2-118 32-184 (204)
368 cd03224 ABC_TM1139_LivF_branch 94.4 0.019 4.8E-07 35.2 1.6 24 1-24 31-54 (222)
369 cd03254 ABCC_Glucan_exporter_l 94.4 0.019 5E-07 35.1 1.6 23 1-23 34-56 (229)
370 pfam01443 Viral_helicase1 Vira 94.4 0.055 1.4E-06 32.4 3.9 21 82-102 60-80 (226)
371 COG1118 CysA ABC-type sulfate/ 94.4 0.019 4.9E-07 35.1 1.5 23 1-23 33-55 (345)
372 cd03291 ABCC_CFTR1 The CFTR su 94.3 0.02 5.1E-07 35.0 1.5 24 1-24 68-91 (282)
373 cd03214 ABC_Iron-Siderophores_ 94.3 0.022 5.6E-07 34.8 1.7 24 1-24 30-53 (180)
374 PRK11176 lipid transporter ATP 94.3 0.029 7.4E-07 34.1 2.3 24 1-24 373-396 (581)
375 PRK13647 cbiO cobalt transport 94.3 0.022 5.6E-07 34.8 1.7 24 1-24 36-59 (273)
376 PRK05703 flhF flagellar biosyn 94.3 0.02 5.1E-07 35.0 1.5 18 1-18 215-232 (412)
377 cd03263 ABC_subfamily_A The AB 94.3 0.021 5.3E-07 34.9 1.5 24 1-24 33-56 (220)
378 COG1117 PstB ABC-type phosphat 94.3 0.019 4.8E-07 35.2 1.3 19 1-19 38-56 (253)
379 cd03292 ABC_FtsE_transporter F 94.2 0.023 5.9E-07 34.6 1.7 24 1-24 32-55 (214)
380 cd03260 ABC_PstB_phosphate_tra 94.2 0.021 5.4E-07 34.9 1.5 21 1-21 31-51 (227)
381 PRK03695 vitamin B12-transport 94.2 0.021 5.4E-07 34.8 1.5 22 1-22 28-49 (245)
382 TIGR02653 Lon_rel_chp conserve 94.2 0.021 5.4E-07 34.9 1.5 129 2-172 224-355 (677)
383 pfam01057 Parvo_NS1 Parvovirus 94.2 0.2 5.1E-06 29.1 6.4 88 1-132 118-207 (271)
384 cd03266 ABC_NatA_sodium_export 94.2 0.022 5.6E-07 34.8 1.5 24 1-24 36-59 (218)
385 TIGR01243 CDC48 AAA family ATP 94.2 0.021 5.4E-07 34.8 1.4 95 1-134 245-352 (980)
386 cd03250 ABCC_MRP_domain1 Domai 94.2 0.021 5.3E-07 34.9 1.4 24 1-24 36-59 (204)
387 PRK11147 ABC transporter ATPas 94.2 0.023 5.9E-07 34.6 1.6 112 1-112 350-490 (632)
388 PRK09536 btuD corrinoid ABC tr 94.2 0.026 6.7E-07 34.3 1.9 24 1-24 33-56 (409)
389 PRK00625 shikimate kinase; Pro 94.2 0.023 6E-07 34.6 1.6 30 1-30 5-36 (173)
390 PRK13768 GTPase; Provisional 94.2 0.023 5.9E-07 34.6 1.6 19 2-20 8-26 (253)
391 COG4619 ABC-type uncharacteriz 94.2 0.027 6.9E-07 34.2 1.9 24 1-24 34-57 (223)
392 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.2 0.022 5.7E-07 34.7 1.5 84 1-108 31-116 (144)
393 cd03269 ABC_putative_ATPase Th 94.1 0.025 6.4E-07 34.4 1.6 24 1-24 31-54 (210)
394 PRK11124 artP arginine transpo 94.1 0.025 6.4E-07 34.4 1.6 24 1-24 33-56 (242)
395 KOG2035 consensus 94.1 0.21 5.3E-06 29.1 6.3 64 81-181 127-190 (351)
396 COG1121 ZnuC ABC-type Mn/Zn tr 94.1 0.024 6.1E-07 34.6 1.4 25 1-25 35-59 (254)
397 cd03244 ABCC_MRP_domain2 Domai 94.1 0.023 6E-07 34.6 1.4 24 1-24 35-58 (221)
398 pfam01695 IstB IstB-like ATP b 94.0 0.024 6.1E-07 34.6 1.4 117 1-168 52-171 (178)
399 PRK10636 putative ABC transpor 94.0 0.025 6.4E-07 34.4 1.5 110 1-110 343-478 (638)
400 cd03268 ABC_BcrA_bacitracin_re 94.0 0.024 6.1E-07 34.5 1.4 24 1-24 31-54 (208)
401 cd03228 ABCC_MRP_Like The MRP 94.0 0.027 6.8E-07 34.3 1.6 105 1-107 33-141 (171)
402 KOG0066 consensus 94.0 0.17 4.2E-06 29.6 5.7 120 1-125 618-763 (807)
403 PRK10762 D-ribose transporter 94.0 0.027 7E-07 34.2 1.7 23 1-23 35-57 (501)
404 TIGR01526 nadR_NMN_Atrans nico 94.0 0.037 9.3E-07 33.5 2.3 148 2-175 181-340 (346)
405 cd02021 GntK Gluconate kinase 94.0 0.025 6.4E-07 34.4 1.5 21 1-21 4-24 (150)
406 cd03252 ABCC_Hemolysin The ABC 93.9 0.028 7.1E-07 34.2 1.6 23 1-23 33-55 (237)
407 TIGR03410 urea_trans_UrtE urea 93.9 0.028 7.2E-07 34.1 1.6 24 1-24 31-54 (230)
408 cd03259 ABC_Carb_Solutes_like 93.9 0.029 7.4E-07 34.0 1.7 24 1-24 31-54 (213)
409 cd03267 ABC_NatA_like Similar 93.9 0.028 7.2E-07 34.1 1.6 23 1-23 52-74 (236)
410 PRK11300 livG leucine/isoleuci 93.9 0.028 7.1E-07 34.2 1.5 24 1-24 36-59 (255)
411 PRK13764 ATPase; Provisional 93.9 0.029 7.4E-07 34.0 1.7 20 2-21 265-284 (605)
412 PRK11819 putative ABC transpor 93.9 0.031 8E-07 33.9 1.8 121 1-125 355-504 (556)
413 cd03245 ABCC_bacteriocin_expor 93.8 0.03 7.6E-07 34.0 1.6 24 1-24 35-58 (220)
414 cd03265 ABC_DrrA DrrA is the A 93.8 0.03 7.7E-07 34.0 1.6 24 1-24 31-54 (220)
415 TIGR01842 type_I_sec_PrtD type 93.8 0.024 6.1E-07 34.6 1.1 24 1-24 361-384 (556)
416 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.8 0.03 7.6E-07 34.0 1.5 24 1-24 34-57 (238)
417 TIGR02315 ABC_phnC phosphonate 93.8 0.027 6.9E-07 34.3 1.3 21 1-21 33-53 (253)
418 cd03216 ABC_Carb_Monos_I This 93.7 0.03 7.6E-07 34.0 1.5 95 1-107 31-127 (163)
419 cd03288 ABCC_SUR2 The SUR doma 93.7 0.033 8.5E-07 33.7 1.7 24 1-24 52-75 (257)
420 PRK10982 galactose/methyl gala 93.7 0.032 8.1E-07 33.8 1.6 23 1-23 29-51 (491)
421 cd03218 ABC_YhbG The ABC trans 93.7 0.032 8.2E-07 33.8 1.6 24 1-24 31-54 (232)
422 cd03289 ABCC_CFTR2 The CFTR su 93.7 0.035 8.9E-07 33.6 1.8 22 1-22 35-56 (275)
423 PRK09700 D-allose transporter 93.7 0.036 9.2E-07 33.5 1.8 24 1-24 36-59 (510)
424 cd02025 PanK Pantothenate kina 93.7 0.039 9.9E-07 33.3 1.9 19 2-20 5-23 (220)
425 PRK13657 cyclic beta-1,2-gluca 93.6 0.036 9.2E-07 33.5 1.8 24 1-24 366-389 (585)
426 PRK08116 hypothetical protein; 93.6 0.03 7.7E-07 33.9 1.3 125 1-178 113-244 (262)
427 PRK06696 uridine kinase; Valid 93.6 0.033 8.5E-07 33.7 1.5 20 2-21 32-51 (227)
428 PRK06995 flhF flagellar biosyn 93.5 0.034 8.7E-07 33.7 1.5 77 1-93 181-266 (404)
429 COG1131 CcmA ABC-type multidru 93.5 0.035 8.8E-07 33.6 1.5 23 1-23 36-58 (293)
430 COG1126 GlnQ ABC-type polar am 93.5 0.035 9E-07 33.6 1.5 40 81-125 154-198 (240)
431 PRK05541 adenylylsulfate kinas 93.5 0.035 8.9E-07 33.6 1.4 20 1-20 12-31 (176)
432 PRK11022 dppD dipeptide transp 93.5 0.04 1E-06 33.2 1.8 22 1-22 38-59 (327)
433 PRK10744 phosphate transporter 93.5 0.037 9.5E-07 33.4 1.6 21 1-21 41-61 (257)
434 TIGR00073 hypB hydrogenase acc 93.5 0.044 1.1E-06 33.0 1.9 20 1-20 39-58 (225)
435 PRK10261 glutathione transport 93.4 0.039 1E-06 33.3 1.7 23 1-23 47-69 (623)
436 COG4138 BtuD ABC-type cobalami 93.4 0.034 8.7E-07 33.6 1.4 22 1-22 30-51 (248)
437 PRK10789 putative multidrug tr 93.4 0.038 9.7E-07 33.4 1.6 52 79-130 467-523 (569)
438 COG4618 ArpD ABC-type protease 93.4 0.031 7.8E-07 33.9 1.1 26 1-26 367-392 (580)
439 TIGR03411 urea_trans_UrtD urea 93.4 0.037 9.4E-07 33.4 1.5 24 1-24 33-56 (242)
440 cd03251 ABCC_MsbA MsbA is an e 93.4 0.039 1E-06 33.3 1.6 24 1-24 33-56 (234)
441 TIGR03375 type_I_sec_LssB type 93.4 0.031 7.9E-07 33.9 1.1 24 1-24 496-519 (694)
442 pfam05970 DUF889 PIF1 helicase 93.4 0.074 1.9E-06 31.7 3.0 47 80-126 73-122 (418)
443 cd01896 DRG The developmentall 93.3 0.13 3.3E-06 30.2 4.2 21 1-21 5-25 (233)
444 PRK13541 cytochrome c biogenes 93.3 0.04 1E-06 33.2 1.6 24 1-24 31-54 (195)
445 PRK11153 metN DL-methionine tr 93.3 0.044 1.1E-06 33.0 1.7 24 1-24 36-59 (343)
446 cd03219 ABC_Mj1267_LivG_branch 93.3 0.04 1E-06 33.2 1.5 23 1-23 31-53 (236)
447 PRK13409 putative ATPase RIL; 93.3 0.038 9.7E-07 33.4 1.4 22 1-22 104-125 (590)
448 KOG0651 consensus 93.3 0.045 1.1E-06 33.0 1.8 99 1-133 171-280 (388)
449 COG1224 TIP49 DNA helicase TIP 93.3 0.043 1.1E-06 33.0 1.7 21 1-21 70-90 (450)
450 pfam09848 DUF2075 Uncharacteri 93.3 0.22 5.6E-06 28.9 5.3 32 81-112 79-118 (348)
451 cd03227 ABC_Class2 ABC-type Cl 93.3 0.036 9.2E-07 33.5 1.2 20 1-20 26-45 (162)
452 pfam06068 TIP49 TIP49 C-termin 93.2 0.041 1.1E-06 33.2 1.5 21 1-21 55-75 (395)
453 cd03215 ABC_Carb_Monos_II This 93.2 0.023 5.9E-07 34.6 0.2 24 1-24 31-54 (182)
454 cd01124 KaiC KaiC is a circadi 93.1 0.04 1E-06 33.2 1.4 17 1-17 4-20 (187)
455 TIGR02769 nickel_nikE nickel i 93.1 0.05 1.3E-06 32.7 1.8 22 1-22 43-64 (267)
456 TIGR03263 guanyl_kin guanylate 93.1 0.055 1.4E-06 32.4 2.0 22 1-22 6-27 (180)
457 cd00071 GMPK Guanosine monopho 93.1 0.05 1.3E-06 32.7 1.8 22 1-22 4-25 (137)
458 cd03278 ABC_SMC_barmotin Barmo 93.1 0.054 1.4E-06 32.5 1.9 24 1-24 27-50 (197)
459 cd01130 VirB11-like_ATPase Typ 93.1 0.057 1.4E-06 32.3 2.1 139 2-178 31-176 (186)
460 TIGR02324 CP_lyasePhnL phospho 93.1 0.043 1.1E-06 33.1 1.4 33 80-112 166-203 (224)
461 PRK13536 nodulation factor exp 93.1 0.045 1.1E-06 32.9 1.5 24 1-24 38-61 (306)
462 TIGR03522 GldA_ABC_ATP gliding 93.1 0.045 1.1E-06 32.9 1.5 24 1-24 33-56 (301)
463 PRK10790 putative multidrug tr 93.1 0.057 1.5E-06 32.3 2.0 52 79-130 492-548 (593)
464 TIGR03575 selen_PSTK_euk L-ser 93.0 0.052 1.3E-06 32.6 1.8 21 1-21 4-24 (340)
465 PTZ00243 ABC transporter; Prov 93.0 0.19 4.7E-06 29.3 4.6 23 2-24 692-714 (1560)
466 TIGR01166 cbiO cobalt ABC tran 93.0 0.041 1E-06 33.2 1.2 24 1-24 23-46 (190)
467 COG4178 ABC-type uncharacteriz 93.0 0.047 1.2E-06 32.8 1.5 101 2-112 425-567 (604)
468 PRK11614 livF leucine/isoleuci 93.0 0.048 1.2E-06 32.8 1.6 24 1-24 36-59 (237)
469 PRK13951 bifunctional shikimat 93.0 0.051 1.3E-06 32.6 1.7 33 1-33 5-39 (488)
470 KOG0730 consensus 93.0 0.057 1.5E-06 32.3 2.0 18 1-18 223-240 (693)
471 PRK13545 tagH teichoic acids e 92.9 0.049 1.2E-06 32.7 1.5 109 1-111 55-196 (549)
472 CHL00131 ycf16 sulfate ABC tra 92.9 0.046 1.2E-06 32.9 1.4 18 1-18 37-54 (252)
473 cd02023 UMPK Uridine monophosp 92.9 0.067 1.7E-06 31.9 2.2 21 2-22 5-25 (198)
474 pfam00485 PRK Phosphoribulokin 92.9 0.063 1.6E-06 32.1 2.1 21 2-22 5-25 (196)
475 PRK13537 lipooligosaccharide t 92.9 0.049 1.3E-06 32.7 1.5 24 1-24 36-59 (304)
476 TIGR03269 met_CoM_red_A2 methy 92.9 0.056 1.4E-06 32.4 1.8 20 1-20 31-50 (520)
477 COG5192 BMS1 GTP-binding prote 92.9 0.05 1.3E-06 32.7 1.5 20 1-20 74-93 (1077)
478 COG1127 Ttg2A ABC-type transpo 92.8 0.058 1.5E-06 32.3 1.8 24 1-24 39-62 (263)
479 COG1855 ATPase (PilT family) [ 92.8 0.052 1.3E-06 32.6 1.5 20 2-21 269-288 (604)
480 PRK08154 anaerobic benzoate ca 92.8 0.055 1.4E-06 32.4 1.6 87 1-89 138-235 (304)
481 pfam06048 DUF927 Domain of unk 92.8 0.14 3.7E-06 30.0 3.8 27 75-103 74-100 (284)
482 TIGR02768 TraA_Ti Ti-type conj 92.8 0.071 1.8E-06 31.8 2.1 94 2-112 436-532 (888)
483 pfam00448 SRP54 SRP54-type pro 92.6 0.058 1.5E-06 32.3 1.6 42 80-133 82-125 (196)
484 TIGR03269 met_CoM_red_A2 methy 92.6 0.056 1.4E-06 32.4 1.5 25 1-25 315-339 (520)
485 cd03115 SRP The signal recogni 92.6 0.059 1.5E-06 32.3 1.6 69 79-171 80-152 (173)
486 PRK09435 arginine/ornithine tr 92.6 0.061 1.6E-06 32.2 1.6 20 1-20 54-73 (325)
487 PRK10522 multidrug transporter 92.5 0.056 1.4E-06 32.4 1.4 23 1-23 354-376 (547)
488 COG0645 Predicted kinase [Gene 92.5 0.13 3.3E-06 30.2 3.2 23 1-23 6-28 (170)
489 PRK11288 araG L-arabinose tran 92.5 0.062 1.6E-06 32.1 1.6 23 1-23 35-57 (501)
490 cd03114 ArgK-like The function 92.5 0.067 1.7E-06 31.9 1.7 20 1-20 4-23 (148)
491 COG4608 AppF ABC-type oligopep 92.4 0.062 1.6E-06 32.1 1.5 24 1-24 44-67 (268)
492 PRK09580 sufC cysteine desulfu 92.4 0.06 1.5E-06 32.2 1.4 19 1-19 32-50 (248)
493 pfam01583 APS_kinase Adenylyls 92.4 0.059 1.5E-06 32.3 1.4 20 1-20 7-26 (157)
494 TIGR03574 selen_PSTK L-seryl-t 92.4 0.059 1.5E-06 32.3 1.3 21 1-21 4-24 (249)
495 PRK13549 xylose transporter AT 92.3 0.078 2E-06 31.5 1.9 23 1-23 293-315 (513)
496 TIGR01313 therm_gnt_kin carboh 92.2 0.07 1.8E-06 31.8 1.6 20 1-20 3-22 (175)
497 TIGR02982 heterocyst_DevA ABC 92.2 0.076 1.9E-06 31.6 1.8 21 1-21 36-56 (220)
498 PRK13826 Dtr system oriT relax 92.1 0.12 2.9E-06 30.5 2.6 91 1-108 402-495 (1102)
499 COG4525 TauB ABC-type taurine 92.1 0.071 1.8E-06 31.8 1.5 24 1-24 36-59 (259)
500 TIGR02673 FtsE cell division A 92.1 0.085 2.2E-06 31.3 1.9 23 1-23 33-55 (215)
No 1
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=100.00 E-value=0 Score=510.52 Aligned_cols=185 Identities=49% Similarity=0.828 Sum_probs=177.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||+||||+|+|+.+|||||+++|++|++.|+|+++.......+..+||||+|||++|..+++|||..|+|||||||
T Consensus 218 l~GPPGsGKTmla~r~~giLP~L~~~EalE~~~v~S~~~~l~~~~~~~rQRPFR~PHHsAS~~~lvGGG~~P~PGEiSLA 297 (505)
T TIGR00368 218 LLGPPGSGKTMLASRLQGILPPLTNEEALETARVLSLVGKLIDRKQWKRQRPFRSPHHSASKPALVGGGSIPKPGEISLA 297 (505)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHH
T ss_conf 67824962689998751057864512666678888888757652301106867786500256664058752228512020
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEE-ECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9988998038785988999999999719523010030789-847015675227465887889887643899999999851
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS-YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQAR 159 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~-~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~r 159 (186)
|+|||||||+.||.+++||+||||+|+|.|+|+|+...+. |||+|+||+||||||||||+++...|.|||+|+.+||+|
T Consensus 298 hnGvLFLDEl~EF~r~vL~~LR~PlEdg~i~iSRa~~ki~kyPA~FqL~aAmNpcPcG~~~~~~~~c~cSp~q~~~Yl~k 377 (505)
T TIGR00368 298 HNGVLFLDELPEFKRKVLDALREPLEDGSISISRAKAKIFKYPARFQLVAAMNPCPCGHYGGKITHCRCSPQQISRYLNK 377 (505)
T ss_pred CCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 05410432220446789987178742670688632201000872455675617887767778744465897899999874
Q ss_pred CCHHHHHCCCEEEECCCCCHHHHHHC
Q ss_conf 22432100425998388566888528
Q gi|254781026|r 160 ISGPLMDRIDIRIAVPSRTHIRSFCN 185 (186)
Q Consensus 160 ls~plldR~Dl~v~~~~~~~~~~~~~ 185 (186)
|||||||||||.|.|+.+.+.+++++
T Consensus 378 Lsgp~LDRiDl~v~v~~~~n~~~L~~ 403 (505)
T TIGR00368 378 LSGPFLDRIDLSVEVPLLPNPGLLSE 403 (505)
T ss_pred CCCHHHCHHCCEECCCCCCCCCHHHH
T ss_conf 27112000114001378887413442
No 2
>PRK09862 putative ATP-dependent protease; Provisional
Probab=100.00 E-value=0 Score=474.60 Aligned_cols=178 Identities=47% Similarity=0.766 Sum_probs=167.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||+||||+|+++++|||||+.+|++|+++|||++|....... +..||||+|||++|.++++|||..++||||++|
T Consensus 215 l~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~-~~~rPfR~PHHs~S~~aliGGG~~~~PGEISLA 293 (506)
T PRK09862 215 LIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQ-WRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA 293 (506)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCEECCCCCCCHHHHHCCCCCCCCCCEEEC
T ss_conf 8769994598999775123899898999999999987189877775-466850378876547666379999999722213
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
|+|||||||++||+++++|+||||||+|+|+|+|++.+++|||+|+||+|||||||||+++. .|+|++.++++||+||
T Consensus 294 H~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~~~~~~PA~F~LVaAmNPCPCG~~~~~--~~~Ct~~~~~rY~~rl 371 (506)
T PRK09862 294 HNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGN--HNRCTPEQTLRYLNRL 371 (506)
T ss_pred CCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECCCEEEECCHHHHEHHCCCCCCCCCCCC--CCCCCHHHHHHHHHHC
T ss_conf 57578845500068889998776224775999966867986153311110378888889999--7778989999998656
Q ss_pred CHHHHHCCCEEEECCCCCHHH
Q ss_conf 243210042599838856688
Q gi|254781026|r 161 SGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 161 s~plldR~Dl~v~~~~~~~~~ 181 (186)
||||||||||+|+|+..+...
T Consensus 372 SGPllDRiDl~v~v~~~~~~~ 392 (506)
T PRK09862 372 SGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred CHHHHHCEEEEEECCCCCHHH
T ss_conf 622130364799816899666
No 3
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=100.00 E-value=0 Score=462.03 Aligned_cols=180 Identities=54% Similarity=0.929 Sum_probs=173.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||+||||+|+++++|||+++.+|++|+++|+|++|... ...++..||||+|||+++.++++||+..++||||++|
T Consensus 27 l~GpPG~GKTmlA~rl~~iLP~l~~~e~le~~~i~S~~g~~~-~~~l~~~rPfr~PHhs~s~~aliGGg~~~~PGeIslA 105 (207)
T pfam01078 27 MIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGG-DGGLIRRRPFRAPHHSASAAALVGGGSIPRPGEISLA 105 (207)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEC
T ss_conf 788998029999976301489987899887776423036877-7774457986578876436332268888999706663
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
|+|||||||++||+++++|+||||||+|+|+|+|++.+++|||+|+||||||||||||++++++.|+|++.++++||+||
T Consensus 106 H~GVLFLDE~~Ef~~~vle~LrqpLE~~~v~IsRa~~~~~~PA~f~LvaA~NPCpCG~~~~~~~~C~C~~~~~~~Y~~rl 185 (207)
T pfam01078 106 HNGVLFLDELPEFSRRVLESLRQPLEDGEITISRARAKVTFPARFQLVAAMNPCPCGYLGDPDKRCRCTPRQIRRYLSRL 185 (207)
T ss_pred CCCEEEECCHHHCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 68788847646539889999987660494899956758986043488885057777878899997578899999998764
Q ss_pred CHHHHHCCCEEEECCCCCHHH
Q ss_conf 243210042599838856688
Q gi|254781026|r 161 SGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 161 s~plldR~Dl~v~~~~~~~~~ 181 (186)
||||||||||+|+|++++..+
T Consensus 186 SgPllDRiDl~v~~~~~~~~~ 206 (207)
T pfam01078 186 SGPLLDRIDLQVEVPRLSAEE 206 (207)
T ss_pred CHHHHCCEEEEEECCCCCHHH
T ss_conf 522020687899778999576
No 4
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=441.77 Aligned_cols=184 Identities=51% Similarity=0.866 Sum_probs=177.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||+||||+|+|+++|||||+..|++|+++|+|++|.......++..||||.|||++|.++++||+..++||+|++|
T Consensus 203 ~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~~~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA 282 (490)
T COG0606 203 LVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA 282 (490)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEE
T ss_conf 75699886567642310259998708889998887635432467864110787688740228897378998898735430
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
|||||||||++||+++++|+||||||+|++.|+|++..++|||+||||+||||||||+++++.+.|.|+++++.+||+||
T Consensus 283 H~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~kl 362 (490)
T COG0606 283 HNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKL 362 (490)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 38778861442105999999737412581799975871687212677522399976478887777578878877889874
Q ss_pred CHHHHHCCCEEEECCCCCHHHHHH
Q ss_conf 243210042599838856688852
Q gi|254781026|r 161 SGPLMDRIDIRIAVPSRTHIRSFC 184 (186)
Q Consensus 161 s~plldR~Dl~v~~~~~~~~~~~~ 184 (186)
|||||||||++|+|++++..+.+.
T Consensus 363 Sgp~lDRiDl~vev~~~~~~e~~~ 386 (490)
T COG0606 363 SGPFLDRIDLMVEVPRLSAGELIR 386 (490)
T ss_pred HHHHHHHHHHEECCCCCCHHHHHC
T ss_conf 378775524110046789787614
No 5
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=100.00 E-value=0 Score=290.94 Aligned_cols=161 Identities=22% Similarity=0.279 Sum_probs=127.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCC----CCCCCCCCCCCCEEECCCC----------CCCHHHCC
Q ss_conf 977786059999999887488989788532300000027----8887565311120203775----------21001102
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISG----HSSHEYSFIQNRPFRSPHH----------SVTIAALI 66 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g----~~~~~~~~~~~~p~~~~~~----------~~~~~~l~ 66 (186)
|+|||||||||+||++++|||+++..+.+++........ ............||+..+. ....+++.
T Consensus 34 i~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~lPl~atedr~~G~ldie~al~ 113 (334)
T PRK13407 34 VFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAEVSSTTMVERPTPVIDLPLGATEDRVVGALDIERALT 113 (334)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 97899865999999999728995110367556677421133431145553448998767899999866447421888862
Q ss_pred CCCCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 34345682799827998899803878598899999999971952301003078984701567522746588788988764
Q gi|254781026|r 67 GGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 67 gg~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
+|+..++||+|++||+||||+||+|+|+++++|+||||||+|+++|+|+|.+++|||+|+|||||||+++
T Consensus 114 ~G~~~~~PGlLa~Ah~GVLylDEinll~~~vld~Ll~~~e~G~~~IeReg~s~~~ParF~LVatmNPeEg---------- 183 (334)
T PRK13407 114 RGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG---------- 183 (334)
T ss_pred CCCCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEEECCEEEECCCCCEEEEEECCCCC----------
T ss_conf 6987788605434028867872053333889999998871695799977634603662658982088877----------
Q ss_pred CCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 3899999999851224321004259983885668885
Q gi|254781026|r 147 IRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
+|+++|||||||+|.|+...+.++.
T Consensus 184 ------------~Lrp~lLDRf~l~v~v~~~~~~~~r 208 (334)
T PRK13407 184 ------------ELRPQLLDRFGLSVEVRSPRDVETR 208 (334)
T ss_pred ------------CCCHHHHHHHCEEEEECCCCCHHHH
T ss_conf ------------7598998361006871487887776
No 6
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=100.00 E-value=2.9e-41 Score=262.86 Aligned_cols=159 Identities=26% Similarity=0.342 Sum_probs=130.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCH-------------HHHHHHHCEEEC-CCCCCCCCCCCCCCEEECCCCCCCHHHCCC
Q ss_conf 777860599999998874889897-------------885323000000-278887565311120203775210011023
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSL-------------EESLEVSMIYSI-SGHSSHEYSFIQNRPFRSPHHSVTIAALIG 67 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~-------------~e~le~~~i~s~-~g~~~~~~~~~~~~p~~~~~~~~~~~~l~g 67 (186)
.|..||||||+||.|+.||||+.. .++|+.+.-... .|..... ....+|+...-++|++.++|
T Consensus 31 rG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~C~~C~~~~~~~G~~~~~---~~~~~~V~LPlgATEDRVvG 107 (688)
T TIGR02442 31 RGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEWCEECRRKLEEQGTLPSE---QRPVPFVNLPLGATEDRVVG 107 (688)
T ss_pred ECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC---CCCCEEEECCCCCCHHHHCC
T ss_conf 778886278988848761602366404788877788704006767555204775313---58735886587752332213
Q ss_pred ----------CCCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCC
Q ss_conf ----------4345682799827998899803878598899999999971952301003078984701567522746588
Q gi|254781026|r 68 ----------GGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCG 137 (186)
Q Consensus 68 ----------g~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG 137 (186)
|...++||.|+.||+|||||||+|+|+++++|.||++.+.|.++|+|.|+|++|||+|+|||||||. .|
T Consensus 108 ~LDi~~al~~G~~~FqPGLLA~AhrGiLYiDEVNLLdDhlVD~lLDaaA~G~n~VEREG~S~~Hparf~L~GTMNPE-EG 186 (688)
T TIGR02442 108 SLDIERALKEGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPE-EG 186 (688)
T ss_pred HHHHHHHHHHCHHHHCCCCHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHCHHHHHHHCCCCCC-HH
T ss_conf 05489998718566078861754687167852001441477899998764800676357430011455322037852-21
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHHHC
Q ss_conf 788988764389999999985122432100425998388566888528
Q gi|254781026|r 138 MSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSFCN 185 (186)
Q Consensus 138 ~~~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~~~ 185 (186)
.+.++ |||||.|+|.|....+.+++++
T Consensus 187 ~LRPQ---------------------LLDRFGL~V~v~~~~d~~~R~E 213 (688)
T TIGR02442 187 DLRPQ---------------------LLDRFGLCVDVAASRDPEERVE 213 (688)
T ss_pred HHCHH---------------------HHHHHHCEEEECCCCCHHHHHH
T ss_conf 10223---------------------2424401155024358668999
No 7
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=100.00 E-value=9.5e-37 Score=236.35 Aligned_cols=162 Identities=23% Similarity=0.296 Sum_probs=133.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCH-------------HHHHHHHCEEE-CCCCCCCCCCCCCCCEE----------ECCC
Q ss_conf 777860599999998874889897-------------88532300000-02788875653111202----------0377
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSL-------------EESLEVSMIYS-ISGHSSHEYSFIQNRPF----------RSPH 57 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~-------------~e~le~~~i~s-~~g~~~~~~~~~~~~p~----------~~~~ 57 (186)
+|+.||||||..|+|+.+||++.- .+.++..++.+ ..|+..+..-+....|+ |..+
T Consensus 31 mGdRGTgKSTavRALAalLP~IkaVagcP~n~~Ps~~~~~c~e~r~~~~~~Gkt~~~~~i~~pvpvVDLPLGaTEDRVcG 110 (340)
T TIGR02030 31 MGDRGTGKSTAVRALAALLPEIKAVAGCPFNSAPSDREELCEEVRILEDSSGKTKKLAVIEKPVPVVDLPLGATEDRVCG 110 (340)
T ss_pred ECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCEEECCCCCCCCCEEC
T ss_conf 67789835689999997499407861768788888861357677775312686567515515765364798862131344
Q ss_pred CCCCHHHCCCCCCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCC
Q ss_conf 52100110234345682799827998899803878598899999999971952301003078984701567522746588
Q gi|254781026|r 58 HSVTIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCG 137 (186)
Q Consensus 58 ~~~~~~~l~gg~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG 137 (186)
+.+.+.+|.-|...+.||.|++||+|+|||||+|++.+++.|.||+...+|++.++|+|+|++|||||.|||.-||. .|
T Consensus 111 tlDIerALt~GvkAFePGLLArANRG~LYiDEVNLLeDHlVDvLLDvAasG~NvVEREG~SiRHPARFVLVGSGNPE-EG 189 (340)
T TIGR02030 111 TLDIERALTEGVKAFEPGLLARANRGYLYIDEVNLLEDHLVDVLLDVAASGVNVVEREGVSIRHPARFVLVGSGNPE-EG 189 (340)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCEEEECCCCCC-CC
T ss_conf 02476775047210366304666178425521000124566566522047830586356023037635871578887-66
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHHHC
Q ss_conf 788988764389999999985122432100425998388566888528
Q gi|254781026|r 138 MSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSFCN 185 (186)
Q Consensus 138 ~~~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~~~ 185 (186)
.+.|| |||||.|++.+..+.+.+++++
T Consensus 190 eLRPQ---------------------LLDRFGlhaeirt~rdve~RVe 216 (340)
T TIGR02030 190 ELRPQ---------------------LLDRFGLHAEIRTVRDVEERVE 216 (340)
T ss_pred CCCCH---------------------HHHHCCCEEEEECCCCHHHHHH
T ss_conf 66740---------------------1524465278722677222012
No 8
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=100.00 E-value=3.3e-35 Score=227.34 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=123.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEE-----------CCCCCCCCCCCCCCCEEECCCCCCCHHHCC----
Q ss_conf 77786059999999887488989788532300000-----------027888756531112020377521001102----
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYS-----------ISGHSSHEYSFIQNRPFRSPHHSVTIAALI---- 66 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s-----------~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~---- 66 (186)
.|+|||||||++|+++.+||++..-+-+...++.. ...............||+.....+|+..+.
T Consensus 39 ~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslD 118 (347)
T CHL00081 39 MGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSDEVRERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTID 118 (347)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHH
T ss_conf 78998749999999998578742206887678989810024266654314666752114686253688885230114000
Q ss_pred ------CCCCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf ------34345682799827998899803878598899999999971952301003078984701567522746588788
Q gi|254781026|r 67 ------GGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSN 140 (186)
Q Consensus 67 ------gg~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~ 140 (186)
.|...++||.|+.||+||||+||+|++++++++.|+++|++|+++|+|.|++.++|++|.|||||||-+ |.
T Consensus 119 ie~al~~G~~~f~pGlLa~A~rGiLyvDEINll~d~~v~~LLda~a~G~~~VEReG~S~~~Pa~F~liaT~NPeE-ge-- 195 (347)
T CHL00081 119 IEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLIGSGNPEE-GE-- 195 (347)
T ss_pred HHHHHHCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEECCCCEEECCCCCEEEEECCCCCC-CC--
T ss_conf 998984587115653122203885886145432379999999998558089804642330575006885578655-67--
Q ss_pred CCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 9887643899999999851224321004259983885668885
Q gi|254781026|r 141 KDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 141 ~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
|+..+||||.++|.+....+.+++
T Consensus 196 -------------------Lrp~llDRF~l~v~v~~~~~~e~R 219 (347)
T CHL00081 196 -------------------LRPQLLDRFGMHAEIRTVKDPELR 219 (347)
T ss_pred -------------------CCHHHHHHEEEEEECCCCCCHHHH
T ss_conf -------------------488888263226745887898999
No 9
>pfam00493 MCM MCM2/3/5 family.
Probab=100.00 E-value=4.7e-34 Score=220.54 Aligned_cols=144 Identities=22% Similarity=0.323 Sum_probs=115.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+|+||+|||+|+|+++.+.|. ..+..|......++.. +....-.+|+|.+++|++++|
T Consensus 62 LvGdPG~gKSqlLk~~~~~~pr-----------~~~tsg~~ss~~GLTa----------~~~~d~~~~~~~leaGalvlA 120 (327)
T pfam00493 62 LVGDPGTAKSQLLKYVAKLAPR-----------AVYTSGKGSSAAGLTA----------AVVRDPDTGEWTLEAGALVLA 120 (327)
T ss_pred EECCCCCCHHHHHHHHHHHCCC-----------CEEECCCCCCCCCCEE----------EEEEECCCCCEEEECCCEEEC
T ss_conf 8469981560999999986887-----------0883177665677615----------899806888369836847755
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
|+||||+|||+++++..+.+|+||||+|+|+|+|+|++.++||+|.++||+||.. |.|.... + ...+-+|
T Consensus 121 d~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsIaKaGi~~tL~ar~sVlAaaNP~~-g~yd~~~-----~----~~~ni~L 190 (327)
T pfam00493 121 DGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANPIF-GRYDPKK-----S----VAENINL 190 (327)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEECCCEEEEECCCCEEEEEECCCC-CCCCCCC-----C----HHHHCCC
T ss_conf 8982785005558876799999999868177633853897258717998527767-7378888-----9----8885589
Q ss_pred CHHHHHCCCEEEECC
Q ss_conf 243210042599838
Q gi|254781026|r 161 SGPLMDRIDIRIAVP 175 (186)
Q Consensus 161 s~plldR~Dl~v~~~ 175 (186)
+.|+||||||...+-
T Consensus 191 p~~lLsRFDLif~l~ 205 (327)
T pfam00493 191 PPPLLSRFDLIFVLL 205 (327)
T ss_pred CHHHHCCEEEEEEEE
T ss_conf 767745010798840
No 10
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-33 Score=217.55 Aligned_cols=159 Identities=25% Similarity=0.294 Sum_probs=123.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCC-------------HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCH------
Q ss_conf 77786059999999887488989-------------78853230000002788875653111202037752100------
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLS-------------LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTI------ 62 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~-------------~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~------ 62 (186)
.|++|+||||++|+|++|||+.+ +.++|+.+..++... .....-....+|.....++++
T Consensus 44 ~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~--~~~~~~~r~v~~v~lPl~ateDrvvGs 121 (423)
T COG1239 44 AGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDEL--EWLPREKRKVPFVALPLGATEDRLVGS 121 (423)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCCEECCEECCCCCCCHHHHCCC
T ss_conf 668875277999999986796332168878899887055519998620232--445422100312238876304330045
Q ss_pred ----HHCCCCCCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCC
Q ss_conf ----1102343456827998279988998038785988999999999719523010030789847015675227465887
Q gi|254781026|r 63 ----AALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138 (186)
Q Consensus 63 ----~~l~gg~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~ 138 (186)
+++-+|...+.||.|.+||+||||+||+|.++++++++|+++|++|++.|+|.|++++|||+|+|||+|||.. |
T Consensus 122 lDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe-G- 199 (423)
T COG1239 122 LDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE-G- 199 (423)
T ss_pred CCHHHHHHCCCCCCCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCEEECCCCCEEEEEECCCCC-C-
T ss_conf 67999972683002775110035887987233435189999999999717740335750313676179996448544-6-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHHH
Q ss_conf 8898876438999999998512243210042599838856688852
Q gi|254781026|r 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSFC 184 (186)
Q Consensus 139 ~~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~~ 184 (186)
.|..+|||||++.|.+....+.++.+
T Consensus 200 --------------------eLrpqLlDRfg~~v~~~~~~~~~~rv 225 (423)
T COG1239 200 --------------------ELRPQLLDRFGLEVDTHYPLDLEERV 225 (423)
T ss_pred --------------------CCCHHHHHHHCCEEECCCCCCHHHHH
T ss_conf --------------------63246675411156234788788889
No 11
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.98 E-value=3.2e-32 Score=209.78 Aligned_cols=145 Identities=23% Similarity=0.326 Sum_probs=116.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+|+||+|||+|++.+..|.|.- -+..|......++.. +....-.+|.|.+++|++++|
T Consensus 241 LvGDPGtgKSqlLk~~~~iaprs-----------vytsG~gsS~aGLTa----------av~rd~~~ge~~leaGALVlA 299 (509)
T smart00350 241 LLGDPGTAKSQLLKYVEKTAPRA-----------VYTTGKGSSAVGLTA----------AVTRDPETREFTLEGGALVLA 299 (509)
T ss_pred EECCCCCCHHHHHHHHHHHCCCE-----------EEEECCCCCCCCCEE----------EEEECCCCCCEEECCCCEECC
T ss_conf 84699823629999999858860-----------687344455577068----------999817888378725641205
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
++||+|||||++++...+.+|+|+||+|+|+|+++|+..++||++.++||+||.. |.|.+.. +. .-+-.|
T Consensus 300 D~GiccIDEfdKm~~~dr~alhEaMEQQtisiaKaGi~~tL~aR~sVlAAaNP~~-g~yd~~~-----s~----~eni~l 369 (509)
T smart00350 300 DNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG-GRYDPKL-----TP----EENIDL 369 (509)
T ss_pred CCCEEEEEEHHHCCHHHHHHHHHHHHHCEEEEECCCEEEEEECCCEEEEEECCCC-CCCCCCC-----CH----HHHCCC
T ss_conf 6754785213207877899999999748778743751799855735998655655-6378889-----99----994689
Q ss_pred CHHHHHCCCEEEECCC
Q ss_conf 2432100425998388
Q gi|254781026|r 161 SGPLMDRIDIRIAVPS 176 (186)
Q Consensus 161 s~plldR~Dl~v~~~~ 176 (186)
+.|||+||||+..+-+
T Consensus 370 ~~~LLSRFDLIf~l~D 385 (509)
T smart00350 370 PAPILSRFDLLFVVLD 385 (509)
T ss_pred CHHHHHHCCEEEEEEC
T ss_conf 8035410238999615
No 12
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.97 E-value=5.9e-31 Score=202.39 Aligned_cols=146 Identities=23% Similarity=0.307 Sum_probs=115.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+|+||+|||+|.|.+..++|.- -...|...+..++. .+...... .|.|.+++|++++|
T Consensus 324 LvGDPgtaKSqlLk~v~~~aPr~-----------vytsgkgss~~GLT---------Aav~rd~~-tge~~LeaGALVlA 382 (682)
T COG1241 324 LVGDPGTAKSQLLKYVAKLAPRG-----------VYTSGKGSSAAGLT---------AAVVRDKV-TGEWVLEAGALVLA 382 (682)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCE-----------EEECCCCCCCCCCE---------EEEEECCC-CCEEEEECCEEEEE
T ss_conf 81798251999999988648840-----------79726412545730---------69997067-76078867779992
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
++||+|||||++++.....+|+++||||+|+|+++|+..++||++.++||+||....|.... ++.+ +-.|
T Consensus 383 D~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~------~~~e----nI~l 452 (682)
T COG1241 383 DGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKK------TVAE----NINL 452 (682)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCC------CHHH----HCCC
T ss_conf 49779997056777678999999987527512055425411144445665188777679999------9788----5589
Q ss_pred CHHHHHCCCEEEECCCC
Q ss_conf 24321004259983885
Q gi|254781026|r 161 SGPLMDRIDIRIAVPSR 177 (186)
Q Consensus 161 s~plldR~Dl~v~~~~~ 177 (186)
+.|||+||||..-+...
T Consensus 453 ~~~lLSRFDLifvl~D~ 469 (682)
T COG1241 453 PAPLLSRFDLIFVLKDD 469 (682)
T ss_pred CHHHHHHCCEEEEECCC
T ss_conf 83577517754770578
No 13
>KOG0480 consensus
Probab=99.96 E-value=1.8e-29 Score=193.72 Aligned_cols=147 Identities=22% Similarity=0.334 Sum_probs=119.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
++|+||+|||++++...+++|.- + ..+|......++. .+....-.+|...+++|++.+|
T Consensus 383 iVGDPgt~KSQfLk~v~~fsPR~----------v-YtsGkaSSaAGLT----------aaVvkD~esgdf~iEAGALmLA 441 (764)
T KOG0480 383 IVGDPGTGKSQFLKAVCAFSPRS----------V-YTSGKASSAAGLT----------AAVVKDEESGDFTIEAGALMLA 441 (764)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC----------E-EECCCCCCCCCCE----------EEEEECCCCCCEEEECCCEEEC
T ss_conf 95799713889999986548731----------5-8507634434646----------8997637777335534737881
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
++||+|||||++++.+.+.+|+||||||+|+|+|+|+..++|||..++||+||-...|.... . .++--++
T Consensus 442 DnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~k--t--------l~eNi~m 511 (764)
T KOG0480 442 DNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKK--T--------LRENINM 511 (764)
T ss_pred CCCEEEECHHCCCCHHHHHHHHHHHHHHEEHHEECCEEEEECCHHHHHHHCCCCCCCCCCCC--C--------HHHHCCC
T ss_conf 69668831000357076899999987510003302068862223555553277677455330--0--------6652277
Q ss_pred CHHHHHCCCEEEEC-CCCC
Q ss_conf 24321004259983-8856
Q gi|254781026|r 161 SGPLMDRIDIRIAV-PSRT 178 (186)
Q Consensus 161 s~plldR~Dl~v~~-~~~~ 178 (186)
|.|||+||||+.-+ +...
T Consensus 512 sApimSRFDL~FiLlD~~n 530 (764)
T KOG0480 512 SAPIMSRFDLFFILLDDCN 530 (764)
T ss_pred CCHHHHHHCEEEEEECCCC
T ss_conf 8045422227999935786
No 14
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.95 E-value=1.1e-28 Score=189.12 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=116.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+|+||++||+|++.+..|.|.- ...+|......++.. .++......|.|.+++|+++||
T Consensus 498 l~GDPgtaKSQlL~yv~~iaPRg-----------vytsGkgsSavGLTA---------~v~~~d~~tg~~~LEaGALVLa 557 (916)
T PTZ00111 498 LCGDPGTAKSQLLHYTHLLSPRS-----------IYTSGKSSSSVGLTA---------SIKFNESDNGRAMIQPGAVVLA 557 (916)
T ss_pred EECCCCCCHHHHHHHHHHHCCCE-----------EEECCCCCCCCCCEE---------EEEECCCCCCCEEEECCCEEEC
T ss_conf 95799601899999999728742-----------674598654226468---------9983268878689854808972
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
++||+|||||++++.....+|+++||||+|+|+|+|+..+++||+.++||+||....|..... -..+ -.|
T Consensus 558 D~GvccIDEFDKM~~~~rs~lhEaMEQQtvSIAKAGI~~tLnARtSvLAaANP~~gry~~~~~-----v~en-----I~l 627 (916)
T PTZ00111 558 NGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKA-----VIEN-----INI 627 (916)
T ss_pred CCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCCCCCCC-----HHHH-----CCC
T ss_conf 798799622203685678899998866312353235045412034565532865565787867-----6764-----579
Q ss_pred CHHHHHCCCEEEEC
Q ss_conf 24321004259983
Q gi|254781026|r 161 SGPLMDRIDIRIAV 174 (186)
Q Consensus 161 s~plldR~Dl~v~~ 174 (186)
+.|||+||||+.-+
T Consensus 628 pp~LLSRFDLIfl~ 641 (916)
T PTZ00111 628 SPSLFTRFDLIYLV 641 (916)
T ss_pred CCHHHHHHHEEEEE
T ss_conf 94033122046775
No 15
>KOG0478 consensus
Probab=99.94 E-value=1.8e-27 Score=181.95 Aligned_cols=147 Identities=23% Similarity=0.276 Sum_probs=115.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+|+||++||++++..+.|+|.- ...+|......++. ......--++.+.++.|+++++
T Consensus 467 L~GDPGtsKSqlLqyv~~l~pRg-----------~yTSGkGsSavGLT----------ayVtrd~dtkqlVLesGALVLS 525 (804)
T KOG0478 467 LVGDPGTSKSQLLQYCHRLLPRG-----------VYTSGKGSSAVGLT----------AYVTKDPDTRQLVLESGALVLS 525 (804)
T ss_pred EECCCCCCHHHHHHHHHHHCCCC-----------EEECCCCCCHHCCE----------EEEEECCCCCEEEEECCCEEEC
T ss_conf 94699867899999999747754-----------04058763022003----------5677657655466504848972
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
++||+|||||++++.+....|+|+||+++++|++||+..++||++.++|++||-..-|.....-.-+- .|
T Consensus 526 D~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI----------~L 595 (804)
T KOG0478 526 DNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENI----------NL 595 (804)
T ss_pred CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHCC----------CC
T ss_conf 89657711233332778899999998763117430223421665303445354324579997623216----------78
Q ss_pred CHHHHHCCCEEEEC-CCCC
Q ss_conf 24321004259983-8856
Q gi|254781026|r 161 SGPLMDRIDIRIAV-PSRT 178 (186)
Q Consensus 161 s~plldR~Dl~v~~-~~~~ 178 (186)
+.+||+||||+.-+ +.+.
T Consensus 596 pptLLSRFDLIylllD~~D 614 (804)
T KOG0478 596 PPTLLSRFDLIFLLLDKPD 614 (804)
T ss_pred CHHHHHHHCEEEEEECCCC
T ss_conf 8056432337899842753
No 16
>KOG0482 consensus
Probab=99.94 E-value=6.2e-28 Score=184.64 Aligned_cols=152 Identities=21% Similarity=0.348 Sum_probs=120.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+|+||++||+|++.+..|-|.- ....|...++.++ +.+....-+.|+..++-|+++||
T Consensus 380 LmGDPGVAKSQLLkyi~rlapRg-----------vYTTGrGSSGVGL----------TAAVmkDpvTgEM~LEGGALVLA 438 (721)
T KOG0482 380 LMGDPGVAKSQLLKYISRLAPRG-----------VYTTGRGSSGVGL----------TAAVMKDPVTGEMVLEGGALVLA 438 (721)
T ss_pred ECCCCCHHHHHHHHHHHHCCCCC-----------CEECCCCCCCCCC----------CHHHHCCCCCCEEEECCCEEEEC
T ss_conf 63897133899999998507665-----------0303888776551----------11211377777068606638971
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
++||+|||||++++.+...+++|+||+|+|+|+|+|+.++++||+.++||+||....|..- .++.+-. .|
T Consensus 439 D~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnpr------rs~e~NI----~L 508 (721)
T KOG0482 439 DGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPR------RSPEQNI----NL 508 (721)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC------CCHHHHC----CC
T ss_conf 6965761233323033357999998765445634201000505677665447433466866------6966736----98
Q ss_pred CHHHHHCCCEEEEC---CCCCHHHHH
Q ss_conf 24321004259983---885668885
Q gi|254781026|r 161 SGPLMDRIDIRIAV---PSRTHIRSF 183 (186)
Q Consensus 161 s~plldR~Dl~v~~---~~~~~~~~~ 183 (186)
+.+||+||||..-+ |++.+.+.+
T Consensus 509 PaALLSRFDll~Li~D~pdrd~D~~L 534 (721)
T KOG0482 509 PAALLSRFDLLWLIQDRPDRDNDLRL 534 (721)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 48898754546421268764334899
No 17
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.94 E-value=1.1e-27 Score=183.11 Aligned_cols=155 Identities=26% Similarity=0.316 Sum_probs=115.6
Q ss_pred CCCCCCCHHHHHHHHHHH---HCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHC---CCCCCCCCH
Q ss_conf 977786059999999887---48898978853230000002788875653111202037752100110---234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPS---ILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAAL---IGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~---iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l---~gg~~~~~p 74 (186)
++||||+|||=.||-.-+ =-|.=.++| +...+.--|++.+.++.=+..|-.-++|..+...+- .-|.++|++
T Consensus 91 iYGPPGVGKTAAARLVLeeAKk~~~SPFke--~A~FVEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~ 168 (532)
T TIGR02902 91 IYGPPGVGKTAAARLVLEEAKKNPASPFKE--EAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKP 168 (532)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 878869617899999999865087537898--866898505103602146666567761585333765457885575877
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEE---------------ECCCEEEEEECCCCCCCCC
Q ss_conf 7998279988998038785988999999999719523010030789---------------8470156752274658878
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS---------------YPSRIQLIAAMNPCRCGMS 139 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~---------------~Pa~f~Lvaa~NPcpcG~~ 139 (186)
|+||+||||||||||+.|++|-.+|.||.+|||.+|-+.-|-++-. |||||.|||||---|.
T Consensus 169 GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~Pe--- 245 (532)
T TIGR02902 169 GAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPE--- 245 (532)
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCC---
T ss_conf 76320258655121246658243531411330222000012358777865427899720678734012133369877---
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf 89887643899999999851224321004259983885668
Q gi|254781026|r 140 NKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 140 ~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
+ |+.+|++|. +-|+..++..+
T Consensus 246 ---E----------------IpPAlRSRC-~EIFFR~L~~E 266 (532)
T TIGR02902 246 ---E----------------IPPALRSRC-VEIFFRPLLKE 266 (532)
T ss_pred ---C----------------CCHHHHCCC-EEEEECCCCHH
T ss_conf ---6----------------783465052-26771688878
No 18
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D; InterPro: IPR011776 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (IPR011775 from INTERPRO), this subunit is not found in archaea.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=99.94 E-value=1.3e-26 Score=176.94 Aligned_cols=161 Identities=26% Similarity=0.381 Sum_probs=129.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCH--------------HHHHHHH--CEEECCCCCCCCC-CCCCCCEEECCCCCCCHHHC
Q ss_conf 77860599999998874889897--------------8853230--0000027888756-53111202037752100110
Q gi|254781026|r 3 GPPGARKSMLASCLPSILLPLSL--------------EESLEVS--MIYSISGHSSHEY-SFIQNRPFRSPHHSVTIAAL 65 (186)
Q Consensus 3 GpPG~GKS~lar~l~~iLP~l~~--------------~e~le~~--~i~s~~g~~~~~~-~~~~~~p~~~~~~~~~~~~l 65 (186)
|--|+|||.|++.|+.+||+.+. ++|+.-+ .|..-+|.+.... ..+..-||+...+..|+..|
T Consensus 24 ~r~Gtgk~al~ral~~~Lp~~~~~~g~~i~~~~PA~P~~W~~~~~ER~~~~~GlsD~~~~~~~~~~p~~~lP~~vtedrL 103 (705)
T TIGR02031 24 ARAGTGKTALARALAEILPPIEELEGSIISNADPAEPDEWEDDLDERIEEEAGLSDSEVKVVIVKAPFVELPLGVTEDRL 103 (705)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCCCCCCCC
T ss_conf 67773889999999985888743266201478888873234456542332047766622046505641025898732030
Q ss_pred CC----------CCCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCC
Q ss_conf 23----------43456827998279988998038785988999999999719523010030789847015675227465
Q gi|254781026|r 66 IG----------GGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCR 135 (186)
Q Consensus 66 ~g----------g~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcp 135 (186)
+| |..++++|.+..||+||||||++++++++..+.|.++|++|++.|+|+|+|+.|||+|.|||+.||-+
T Consensus 104 ~G~iDve~sl~~G~~V~~~GlL~~A~~gvlyvd~~~lld~~~~n~l~~AL~~G~~~vEREGiS~~~Pa~f~Liatydp~E 183 (705)
T TIGR02031 104 LGGIDVEESLASGQRVLQPGLLDEANRGVLYVDSLNLLDDSLVNRLLDALDEGVVIVEREGISVVHPAKFVLIATYDPAE 183 (705)
T ss_pred CCCCCCCCCCCCCEEEEECCCHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCC
T ss_conf 26400201468782544076031168970431545411068999999886549768886565630476730366317777
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 887889887643899999999851224321004259983885668885
Q gi|254781026|r 136 CGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 136 cG~~~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
.+. ++.+.|+||+-|+|....+..++.+
T Consensus 184 ~~~--------------------~lr~~L~DRla~~v~~~~~~~~~~R 211 (705)
T TIGR02031 184 GDG--------------------ALREHLLDRLALIVSLEEVASLEAR 211 (705)
T ss_pred CCC--------------------CCCHHHHHHHHHEECCHHCCCHHHH
T ss_conf 877--------------------6620454034411051102578889
No 19
>KOG0477 consensus
Probab=99.94 E-value=1.1e-27 Score=183.22 Aligned_cols=143 Identities=20% Similarity=0.288 Sum_probs=111.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+|+||||||+++|....+-|.- -...|+.....++. ......-++++|.++.|+++||
T Consensus 487 L~GDPGTaKSQFLKY~eK~s~RA-----------V~tTGqGASavGLT----------a~v~KdPvtrEWTLEaGALVLA 545 (854)
T KOG0477 487 LLGDPGTAKSQFLKYAEKTSPRA-----------VFTTGQGASAVGLT----------AYVRKDPVTREWTLEAGALVLA 545 (854)
T ss_pred EECCCCCCHHHHHHHHHHCCCCE-----------EEECCCCCCCCCEE----------EEEEECCCCCEEEECCCEEEEC
T ss_conf 84699822899999998627531-----------68506775433326----------8875178653036516728972
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
++||++||||++++++...++++|||||.|+|+|+|+..++.|+|.+|||+||-...|...- ...-+ -.|
T Consensus 546 DkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~--tFaqN--------V~l 615 (854)
T KOG0477 546 DKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSL--TFAQN--------VDL 615 (854)
T ss_pred CCCEEEEEHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC--CHHHC--------CCC
T ss_conf 68537741211204011015999987512014466689988755443000277777568751--14330--------554
Q ss_pred CHHHHHCCCEEEEC
Q ss_conf 24321004259983
Q gi|254781026|r 161 SGPLMDRIDIRIAV 174 (186)
Q Consensus 161 s~plldR~Dl~v~~ 174 (186)
+.|+|+||||.-.|
T Consensus 616 tePIlSRFDiLcVv 629 (854)
T KOG0477 616 TEPILSRFDILCVV 629 (854)
T ss_pred CCCHHHHCCEEEEE
T ss_conf 44412111324564
No 20
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.91 E-value=1.1e-24 Score=165.59 Aligned_cols=159 Identities=25% Similarity=0.252 Sum_probs=111.4
Q ss_pred CCCCCCCHHHHHHHHHHH---HCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHH---C-CCCCCCCC
Q ss_conf 977786059999999887---4889897885323000000278887565311120203775210011---0-23434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPS---ILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAA---L-IGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~---iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~---l-~gg~~~~~ 73 (186)
|+|||||||||.||-.-+ -|+.-.+.+ +...+.--.++++++...++.|-.-+.|..+-..+ | -.|.+.|+
T Consensus 181 LYGPPGVGKTTaARl~LEe~K~~~~tPF~~--DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk 258 (616)
T TIGR02903 181 LYGPPGVGKTTAARLALEEAKKLKNTPFAE--DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPK 258 (616)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 557338847899999876213687447611--378575157626677410147767762576556764011047879898
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEE---------------ECCCEEEEEECCCCCCCC
Q ss_conf 27998279988998038785988999999999719523010030789---------------847015675227465887
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS---------------YPSRIQLIAAMNPCRCGM 138 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~---------------~Pa~f~Lvaa~NPcpcG~ 138 (186)
+|.+|.||||||||||++|+++=.++.||.+|||++|..+-+-+.-. =||+|+||||+---|.
T Consensus 259 ~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~-- 336 (616)
T TIGR02903 259 LGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPE-- 336 (616)
T ss_pred CCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHH--
T ss_conf 987100477567650211222787632444322643665321248753786558888522688825687266158824--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCC--HHHHHH
Q ss_conf 8898876438999999998512243210042599838856--688852
Q gi|254781026|r 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRT--HIRSFC 184 (186)
Q Consensus 139 ~~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~--~~~~~~ 184 (186)
-|..+|++|.-= |++.+++ ++.+++
T Consensus 337 --------------------eINpALRSRCaE-vfFePL~p~dI~~Iv 363 (616)
T TIGR02903 337 --------------------EINPALRSRCAE-VFFEPLTPEDIKEIV 363 (616)
T ss_pred --------------------HCCHHHHCCCCE-EECCCCCHHHHHHHH
T ss_conf --------------------405123301431-321798878999999
No 21
>KOG0479 consensus
Probab=99.90 E-value=3.8e-24 Score=162.41 Aligned_cols=145 Identities=21% Similarity=0.297 Sum_probs=110.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCC--CCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH
Q ss_conf 97778605999999988748898978853230000002788--8756531112020377521001102343456827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHS--SHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~--~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~ 78 (186)
|+|+|-++||+|+|.+-..-| .+++.+. .++.++. .+....--.|++.+++|+.+
T Consensus 339 lvGDPSvAKSQLLRyVLntAp-------------lAI~TTGRGSSGVGLT----------AAVTtD~eTGERRLEAGAMV 395 (818)
T KOG0479 339 LVGDPSVAKSQLLRYVLNTAP-------------LAIATTGRGSSGVGLT----------AAVTTDQETGERRLEAGAMV 395 (818)
T ss_pred EECCCHHHHHHHHHHHHHCCC-------------CCCCCCCCCCCCCCCE----------EEEEECCCCCHHHHHCCCEE
T ss_conf 846952789999999984154-------------0010368887775514----------67741555313434238368
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 27998899803878598899999999971952301003078984701567522746588788988764389999999985
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
||++||.|||||+++++-..-+++++||||+|+|+++|+-.+++|||.++||.||-...|... -+|.+-.
T Consensus 396 LADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~------k~P~eNI---- 465 (818)
T KOG0479 396 LADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQS------KTPMENI---- 465 (818)
T ss_pred ECCCCEEEEHHCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHCCCEEEEEECCCCCCCCCCC------CCHHHCC----
T ss_conf 705855873100222430378999998605388671100020235112443137644346777------8856515----
Q ss_pred HCCHHHHHCCCEE-EECCCCC
Q ss_conf 1224321004259-9838856
Q gi|254781026|r 159 RISGPLMDRIDIR-IAVPSRT 178 (186)
Q Consensus 159 rls~plldR~Dl~-v~~~~~~ 178 (186)
.|..-||+||||. |.++.+.
T Consensus 466 gLpDSLLSRFDLlFv~lD~~d 486 (818)
T KOG0479 466 GLPDSLLSRFDLLFVVLDDID 486 (818)
T ss_pred CCCHHHHHHHCEEEEEECCCC
T ss_conf 881777754217788721355
No 22
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.90 E-value=1.3e-23 Score=159.32 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=109.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCC
Q ss_conf 77786059999999887488989788532300000027888756531112020377521001102343456827998279
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAH 81 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh 81 (186)
-|++|++||++++.+..+||+-.. ...........+..+.......+-.|...++||.++.||
T Consensus 31 rg~~Gtakst~~r~l~~llp~~~p-----------------~~~lPl~~tedrl~G~lDi~~tL~~G~~v~~~GLLa~A~ 93 (584)
T PRK13406 31 RARAGPVRDRWLAALRALLPAGTP-----------------LRRLPPGIADDRLLGGLDLAATLRAGRPVAERGLLAEAD 93 (584)
T ss_pred ECCCCCHHHHHHHHHHHHCCCCCC-----------------EEECCCCCCHHHHCCCCCHHHHHHCCCEECCCCHHHCCC
T ss_conf 779995799999999975689998-----------------465699997415147125999997689852575333036
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 98899803878598899999999971952301003078984701567522746588788988764389999999985122
Q gi|254781026|r 82 NGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARIS 161 (186)
Q Consensus 82 ~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rls 161 (186)
+||||+||+|.+++++.+.|++++.+|+++|+|.|++.+||++|.||+++|+.+. +. .+.
T Consensus 94 ~gvLyvdevnll~d~lv~~Ll~a~~~G~~~vEReGiS~~~parf~LIa~deg~e~----de----------------~~~ 153 (584)
T PRK13406 94 GGVLVLAMAERLEPGTAARLAAALDAGEVAIERDGLALRMPARFGLVALDEGAEE----DE----------------RAP 153 (584)
T ss_pred CCEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCC----CC----------------CHH
T ss_conf 9989985147378889999999985487400258766356650589994678876----43----------------110
Q ss_pred HHHHHCCCEEEECCCCC
Q ss_conf 43210042599838856
Q gi|254781026|r 162 GPLMDRIDIRIAVPSRT 178 (186)
Q Consensus 162 ~plldR~Dl~v~~~~~~ 178 (186)
..|+|||.+++++....
T Consensus 154 ~~l~dRla~~vd~~~~~ 170 (584)
T PRK13406 154 AALADRLAFHLDLDGLA 170 (584)
T ss_pred HHHHHHHCCCCCHHHHH
T ss_conf 78887650706816766
No 23
>KOG0481 consensus
Probab=99.88 E-value=3.4e-23 Score=156.84 Aligned_cols=145 Identities=22% Similarity=0.285 Sum_probs=106.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+|+||++||+|+|.+-.+-|- +. ..+|+..+..++.. .....-.+-..-.+-|+.+||
T Consensus 369 LLGDPgtAKSQlLKFvEkvsPI----------aV-YTSGKGSSAAGLTA----------SV~RD~~tReFylEGGAMVLA 427 (729)
T KOG0481 369 LLGDPGTAKSQLLKFVEKVSPI----------AV-YTSGKGSSAAGLTA----------SVIRDPSTREFYLEGGAMVLA 427 (729)
T ss_pred EECCCCHHHHHHHHHHHHCCCE----------EE-EECCCCCCCCCCEE----------EEEECCCCCEEEEECCEEEEE
T ss_conf 8369852689999999860863----------79-94688764334624----------678668763389826659981
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCC-CCCCCCHHHHHHHHHH
Q ss_conf 998899803878598899999999971952301003078984701567522746588788988-7643899999999851
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDE-NVCIRGPRCATEYQAR 159 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~-~~c~c~~~~~~~Y~~r 159 (186)
+|||+|||||++++++..-+++||||+|+|+|+++|+++++++|+.++||+||-. |.|.+.. ..-+-.
T Consensus 428 DgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvf-GRyDd~Kt~~dNID---------- 496 (729)
T KOG0481 428 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVF-GRYDDTKTGEDNID---------- 496 (729)
T ss_pred CCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCC-CCCCCCCCCCCCCC----------
T ss_conf 6978983000025820156898998765577755052256424033445337866-55434678555632----------
Q ss_pred CCHHHHHCCCEEEECCCC
Q ss_conf 224321004259983885
Q gi|254781026|r 160 ISGPLMDRIDIRIAVPSR 177 (186)
Q Consensus 160 ls~plldR~Dl~v~~~~~ 177 (186)
+-.-+|+|||++.-|.+.
T Consensus 497 f~~TILSRFDmIFIVKD~ 514 (729)
T KOG0481 497 FMPTILSRFDMIFIVKDE 514 (729)
T ss_pred HHHHHHHHCCEEEEEECC
T ss_conf 234676451379998336
No 24
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.84 E-value=1.6e-20 Score=141.11 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=76.9
Q ss_pred CCEEECCCCCCCHHHCCCCCCC---------------CCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 1202037752100110234345---------------6827998279988998038785988999999999719523010
Q gi|254781026|r 50 NRPFRSPHHSVTIAALIGGGLQ---------------VLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIAR 114 (186)
Q Consensus 50 ~~p~~~~~~~~~~~~l~gg~~~---------------~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R 114 (186)
.+||..- +.+...++.|.... .+||+|.+||+|||||||++.+++..++.|+.+|+++++.|+.
T Consensus 181 ~aPfvdA-tga~a~aLlGdVrHdP~qsGGlgTPah~Rv~aGAiHkA~gGvL~IDei~~L~~~~q~~Ll~alq~~k~~I~g 259 (637)
T PRK13765 181 TAPFVDA-TGAHAGALLGDVRHDPFQSGGLETPAHERVEAGAIHKAHKGVLFIDEINTLRLESQQSLLTAMQEKKYPITG 259 (637)
T ss_pred CCCEECC-CCCCHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCEECCC
T ss_conf 8983307-874446651774248633489899961000266121135856998445647988999999999659153236
Q ss_pred CCEE--------EEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCC---EEEECC
Q ss_conf 0307--------898470156752274658878898876438999999998512243210042---599838
Q gi|254781026|r 115 ANRK--------ISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRID---IRIAVP 175 (186)
Q Consensus 115 ~g~~--------~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rls~plldR~D---l~v~~~ 175 (186)
.+-. --.|++|.||++.|++- ..++..+|++|++ ..|.+.
T Consensus 260 ~~e~SsgA~v~tepvP~Df~lV~aGn~d~---------------------~~~m~palrsri~g~gyev~~~ 310 (637)
T PRK13765 260 QSERSSGAMVRTEPVPCDFIMVAAGNLDA---------------------IENMHPALRSRIRGYGYEVYMN 310 (637)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCHHH---------------------HHHCCHHHHHHHHCCCEEEEEC
T ss_conf 88666776257898661369999537276---------------------6643998886510477499823
No 25
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.83 E-value=1.5e-20 Score=141.34 Aligned_cols=128 Identities=26% Similarity=0.365 Sum_probs=92.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCC-CCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 97778605999999988748898978853230000002788-87565311120203775210011023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHS-SHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~-~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l 79 (186)
|+||||+|||++|+.++..+..... ..+.... .....++. .....++.....+|.+..
T Consensus 4 l~Gp~G~GKT~la~~la~~l~~~~~---------~~i~~~~~~~~~dl~G------------~~~~~~~~~~~~~g~l~~ 62 (139)
T pfam07728 4 LVGPPGTGKSELAERLAAALSNRPV---------FYVQLTRDTTEEDLKG------------RRNIANGTTSWVDGPLVR 62 (139)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCC---------HHHCCCCCCCHHHCCC------------CEECCCCCEEEECCHHHC
T ss_conf 9989975699999999998079831---------1121465565222057------------342379935781551410
Q ss_pred C--CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEEC-----CCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 7--998899803878598899999999971952301003078984-----701567522746588788988764389999
Q gi|254781026|r 80 A--HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYP-----SRIQLIAAMNPCRCGMSNKDENVCIRGPRC 152 (186)
Q Consensus 80 A--h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~P-----a~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~ 152 (186)
| +++||||||++++++++++.|+++||++++.+...+..+..+ .+|.+||||||- +.+-
T Consensus 63 a~~~g~vl~lDEin~a~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~---~~g~----------- 128 (139)
T pfam07728 63 AAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL---DRGL----------- 128 (139)
T ss_pred CCCCCCEEEECCHHHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC---CCCC-----------
T ss_conf 10128689963434489999999999974896983689727336666789996999975896---5478-----------
Q ss_pred HHHHHHHCCHHHHHCC
Q ss_conf 9999851224321004
Q gi|254781026|r 153 ATEYQARISGPLMDRI 168 (186)
Q Consensus 153 ~~~Y~~rls~plldR~ 168 (186)
+.|+.+|+|||
T Consensus 129 -----~~l~~Al~~RF 139 (139)
T pfam07728 129 -----NELSPALRSRF 139 (139)
T ss_pred -----CCCCHHHHCCC
T ss_conf -----00998997509
No 26
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.82 E-value=3.3e-20 Score=139.35 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=88.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCC-CCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 977786059999999887488989788532300000027888-7565311120203775210011023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSS-HEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~-~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l 79 (186)
|.||||||||++|+.++..+-- ..+.+..... ....+.... .-...+|...+++|.+.
T Consensus 4 L~GppG~GKT~l~~~lA~~~~~----------~~~~i~~~~~~~~~Dl~G~~----------~~~~~~~~~~~~~G~l~- 62 (131)
T pfam07726 4 LEGVPGLAKTLLARTLARSLGL----------DFRRIQFTPDLLPSDITGTE----------VYDQKTREFEFRPGPIF- 62 (131)
T ss_pred EECCCCCHHHHHHHHHHHHHCC----------CCEEEEECCCCCCCCCCCCE----------EECCCCCEEEEECCCCC-
T ss_conf 8989987699999999999599----------81688833776700036845----------42378740898457310-
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 79988998038785988999999999719523010030789847015675227465887889887643899999999851
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQAR 159 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~r 159 (186)
++|+|+||+|.++++++++|+++|+++++++ .|..+..|.+|.++|||||. +|.+.. +
T Consensus 63 --~~vl~lDEin~a~~~v~~~Ll~~l~er~v~~--~g~~~~~p~~f~viAt~NP~--e~~G~~----------------~ 120 (131)
T pfam07726 63 --ANVLLADEINRAPPKTQSALLEAMQERQVTI--GGETHPLPEPFFVLATQNPI--EQEGTY----------------P 120 (131)
T ss_pred --CCCEEEEHHHCCCHHHHHHHHHHHHCEEEEE--CCEEEECCCCEEEEECCCCC--CCCCCE----------------E
T ss_conf --3705640120399899999997632649977--99885279984999716987--555764----------------4
Q ss_pred CCHHHHHCCC
Q ss_conf 2243210042
Q gi|254781026|r 160 ISGPLMDRID 169 (186)
Q Consensus 160 ls~plldR~D 169 (186)
|+.+|+|||=
T Consensus 121 L~~al~dRF~ 130 (131)
T pfam07726 121 LPEAQLDRFL 130 (131)
T ss_pred CCHHHHCCCC
T ss_conf 9988965615
No 27
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.76 E-value=1.9e-18 Score=129.05 Aligned_cols=141 Identities=28% Similarity=0.380 Sum_probs=99.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC-CCCCCCCHHHHHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102-3434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI-GGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~-gg~~~~~pG~i~l 79 (186)
|.|+||+|||++|+.++..+- . ....|.-..+....+ + .+......... .+...+.+|-+..
T Consensus 48 l~G~PG~gKT~la~~lA~~l~-~------~~~~i~~t~~l~p~d--~--------~G~~~~~~~~~~~~~~~~~~gpl~~ 110 (329)
T COG0714 48 LEGPPGVGKTLLARALARALG-L------PFVRIQCTPDLLPSD--L--------LGTYAYAALLLEPGEFRFVPGPLFA 110 (329)
T ss_pred EECCCCCCHHHHHHHHHHHHC-C------CCEEEECCCCCCHHH--H--------CCHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 779898777999999999838-9------818995689988888--2--------0568887664257718984687334
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 79988998038785988999999999719523010030789847015675227465887889887643899999999851
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQAR 159 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~r 159 (186)
+.++|||+|||+..++.++++|+++|+++++++...+. ...|-.|.++||+||-+ +.+.. -
T Consensus 111 ~~~~ill~DEInra~p~~q~aLl~~l~e~~vt~~~~~~-~~~~~~f~viaT~Np~e--~~g~~----------------~ 171 (329)
T COG0714 111 AVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTT-IRLPPPFIVIATQNPGE--YEGTY----------------P 171 (329)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCCC-CCCCCCCEEEEECCCCC--CCCCC----------------C
T ss_conf 51338998703458988999999999726897079665-33799878998268676--57887----------------8
Q ss_pred CCHHHHHCCCEEEECCCC
Q ss_conf 224321004259983885
Q gi|254781026|r 160 ISGPLMDRIDIRIAVPSR 177 (186)
Q Consensus 160 ls~plldR~Dl~v~~~~~ 177 (186)
++.+++|||.+.++++-.
T Consensus 172 l~eA~ldRf~~~~~v~yp 189 (329)
T COG0714 172 LPEALLDRFLLRIYVDYP 189 (329)
T ss_pred CCHHHHCCCEEEEECCCC
T ss_conf 998888103887764899
No 28
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.67 E-value=1.8e-16 Score=117.38 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=114.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||.|||||-+||.||..|= |+ ..+.++......+.++---.+.+.+++--...+..-+|.+-
T Consensus 532 F~GPTGVGKTElak~LA~~LG------------v~----l~RFDMSEYmEKHTVsRLIGsPPGYVGfEqGGLLT~AvrK~ 595 (774)
T TIGR02639 532 FVGPTGVGKTELAKQLAEELG------------VH----LLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKH 595 (774)
T ss_pred EECCCCCCHHHHHHHHHHHHC------------CH----HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 647989625788999999708------------20----01046504468999987416888851316777212233128
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC-------CCCCCCCCCCCCCCCCHHHH
Q ss_conf 99889980387859889999999997195230100307898470156752274-------65887889887643899999
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP-------CRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP-------cpcG~~~~~~~~c~c~~~~~ 153 (186)
.+.||.||||.+.++++.|.|||+|...+.|.+.+...-.- +.+||+|+|- .+.||.+.... .-+..+|
T Consensus 596 P~cVLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFR--NVILIMTSNaGa~E~~~~~iGF~~~~~~--~~~~~Ai 671 (774)
T TIGR02639 596 PHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFR--NVILIMTSNAGAREMSKNPIGFGGERVE--DKSEKAI 671 (774)
T ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEC--CEEEEECCCCCCCCCCCCCCCCCCCCCH--HHHHHHH
T ss_conf 85354234666631336667876633543405888576311--3688840370010236776442555412--3348889
Q ss_pred HHHHHHCCHH-HHHCCCEEEECCCCCHH
Q ss_conf 9998512243-21004259983885668
Q gi|254781026|r 154 TEYQARISGP-LMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 154 ~~Y~~rls~p-lldR~Dl~v~~~~~~~~ 180 (186)
.|+..| +++|+|=+|...+++..
T Consensus 672 ----kk~F~PEFRNRLDaii~F~~L~~~ 695 (774)
T TIGR02639 672 ----KKLFSPEFRNRLDAIIAFNDLSEE 695 (774)
T ss_pred ----HHHCCCCCCCCCCCEEECCCCCHH
T ss_conf ----731587420133464416998899
No 29
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.65 E-value=1.2e-15 Score=112.58 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=103.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||+|||||.+|+.|+..|=. +.....+.+........-++-.-.+.+.+++.+......-.|.+-
T Consensus 603 FlGPTGVGKTElAK~LA~~LF~-------------~e~~liriDMSEy~E~hsVSrLiGaPPGYVGy~eGG~LTeaVRr~ 669 (857)
T PRK10865 603 FLGPTGVGKTELCKALANFMFD-------------SDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRR 669 (857)
T ss_pred EECCCCCCHHHHHHHHHHHHHC-------------CHHHEEEECCHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 8689878889999999999838-------------933425625332113012767558998766757788110999819
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC------CCCCCCCCCCCCCCCHHHH-
Q ss_conf 998899803878598899999999971952301003078984701567522746------5887889887643899999-
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC------RCGMSNKDENVCIRGPRCA- 153 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc------pcG~~~~~~~~c~c~~~~~- 153 (186)
.+.|+++||+.+.+++|++.|+|.|++|+++.+++..+-.- ++++|+|+|-= .+|....+. ....+
T Consensus 670 PySVvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~--NtIIImTSN~Gs~~i~~~~~~~~~~~-----~~~~~~ 742 (857)
T PRK10865 670 PYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFR--NTVVIMTSNLGSDLIQERFGELDYAH-----MKELVL 742 (857)
T ss_pred CCEEEEEHHHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEE--EEEEEECCCHHHHHHHHHCCCCCHHH-----HHHHHH
T ss_conf 87788632576638589999998703683207999888513--34899646233699986506556688-----999999
Q ss_pred HHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 9998512243210042599838856688
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
..-.+.++..||+|||=.|...+++...
T Consensus 743 ~~l~~~F~PEFlnRiD~iv~F~pL~~~~ 770 (857)
T PRK10865 743 GVVSHNFRPEFINRIDEVVVFHPLGEQH 770 (857)
T ss_pred HHHHHHCCHHHHHCCCEEEEECCCCHHH
T ss_conf 9998647988882378489827899999
No 30
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.64 E-value=2.2e-16 Score=116.90 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=80.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|.||||.||||||.=+|+=|- +.++..+|- . .-....+.+=-.. +-
T Consensus 35 L~GPPGLGKTTLA~IiA~Emg----------~~l~iTsGP-----~------------L~kPgDlaaiLt~-------L~ 80 (305)
T TIGR00635 35 LYGPPGLGKTTLAHIIANEMG----------VNLKITSGP-----A------------LEKPGDLAAILTN-------LE 80 (305)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCCEEEECC-----C------------CCCHHHHHHHHHH-------CC
T ss_conf 317568746789999999838----------932674067-----5------------5475789999970-------56
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHH----CCEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9988998038785988999999999719523010----03078984-701567522746588788988764389999999
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIAR----ANRKISYP-SRIQLIAAMNPCRCGMSNKDENVCIRGPRCATE 155 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R----~g~~~~~P-a~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~ 155 (186)
.|-|||||||..++|.+-|.|+-||||.++-|.= +..+++++ +.|.||||+==.
T Consensus 81 ~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~--------------------- 139 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA--------------------- 139 (305)
T ss_pred CCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCC---------------------
T ss_conf 89631012565048334531053001217877871289852576068694420000347---------------------
Q ss_pred HHHHCCHHHHHCCCEEEECC
Q ss_conf 98512243210042599838
Q gi|254781026|r 156 YQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 156 Y~~rls~plldR~Dl~v~~~ 175 (186)
.+||.||.|||.+.-.+.
T Consensus 140 --G~lt~PLrdRFG~~~rl~ 157 (305)
T TIGR00635 140 --GMLTSPLRDRFGIILRLE 157 (305)
T ss_pred --CCCCCCHHHHHHHHHHCC
T ss_conf --741031334544745402
No 31
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.63 E-value=1.3e-15 Score=112.46 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=102.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||+|||||.+|+.|+..|=. +.......+........-.+-.-.+.+.+++.+......-.|.+-
T Consensus 600 f~GptGvGKTELAKaLAe~Lfg-------------~~~~LIriDMSEy~E~hsvsrLiGaPPGYVGy~egG~Lte~vr~~ 666 (852)
T TIGR03346 600 FLGPTGVGKTELAKALAEFLFD-------------DEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRK 666 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHHC-------------CCCCEEEECHHHHCCHHHHHHHCCCCCCCCCCCCCCEECHHHHHC
T ss_conf 8678877689999999999855-------------852069843044301224778558999767768787423989819
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCC--CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 998899803878598899999999971952301003078984701567522746588--788988764389999999985
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCG--MSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG--~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
.+.|+++||+.+.+++|++.|+|.|++|+++.+++..+-.- ++++|+|+|----- ........-.-.......-.+
T Consensus 667 PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~--NtiiimTSN~Ga~~i~~~~~~~~~~~~~~~~~~~~~~ 744 (852)
T TIGR03346 667 PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFR--NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRA 744 (852)
T ss_pred CCEEEEECCHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEE--EEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 88799853054307689999998823674307999888535--5689861540659997411455579999999999996
Q ss_pred HCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 12243210042599838856688
Q gi|254781026|r 159 RISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 159 rls~plldR~Dl~v~~~~~~~~~ 181 (186)
.++.-|++|||-.|...+++...
T Consensus 745 ~F~PEflnRid~ii~F~~L~~~~ 767 (852)
T TIGR03346 745 HFRPEFLNRIDEIVVFHPLGREQ 767 (852)
T ss_pred HCCHHHHHHCCEEEEECCCCHHH
T ss_conf 58998996378689837899999
No 32
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.63 E-value=2.6e-15 Score=110.60 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=104.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||.|||||.+|+.|+..|=. +.....+.+........-++-.-.+.+.+++.+......-.|.+-
T Consensus 544 f~GPTGvGKTElAK~LA~~LFg-------------~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~ 610 (823)
T CHL00095 544 FCGPTGVGKTELTKALASYFFG-------------SEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKK 610 (823)
T ss_pred EECCCCCCHHHHHHHHHHHHCC-------------CCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 8789988779999999999747-------------820258853510155420767458998766778788201988719
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCC------C---CCCCCCCCCCC--CC
Q ss_conf 9988998038785988999999999719523010030789847015675227465------8---87889887643--89
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCR------C---GMSNKDENVCI--RG 149 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcp------c---G~~~~~~~~c~--c~ 149 (186)
.+.|+++||+.+.+++|++.|+|.|++|+++.+++..+-.- ++++|+|+|-=- . |+....+.... -.
T Consensus 611 PysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~--NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~ 688 (823)
T CHL00095 611 PYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFK--NTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQ 688 (823)
T ss_pred CCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECE--EEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 98699862131138899998876516884348999988431--0399971650558887413443433344543220235
Q ss_pred H----HHHHH-HHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 9----99999-98512243210042599838856688
Q gi|254781026|r 150 P----RCATE-YQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 150 ~----~~~~~-Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
. .++.. -.+.+..-||+|||=.|...+++...
T Consensus 689 ~~~~~~~v~~~l~~~F~PEFlnRiDeii~F~~L~~~~ 725 (823)
T CHL00095 689 YKRLSNLVNEELKQYFRPEFLNRLDEIIVFRPLTKDE 725 (823)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHH
T ss_conf 8999999999998437987873278278618999999
No 33
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3e-15 Score=110.28 Aligned_cols=164 Identities=18% Similarity=0.115 Sum_probs=102.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||.|||||.+|+.|+..|=.-. ....+.+........-++-.-.+...+++.+......-+|.+-
T Consensus 526 F~GPTGVGKTELAkaLA~~Lfg~e-------------~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~ 592 (786)
T COG0542 526 FLGPTGVGKTELAKALAEALFGDE-------------QALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK 592 (786)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC-------------CCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCC
T ss_conf 667886569999999999965997-------------4445545687777877998727999872006554003766069
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC----C-CCCCHHHHHH
Q ss_conf 9988998038785988999999999719523010030789847015675227465887889887----6-4389999999
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN----V-CIRGPRCATE 155 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~----~-c~c~~~~~~~ 155 (186)
...|+++||+.+.+|+|+|.|+|+|++|+.+.+++..+-.- +.++|+|+|--- ........ . -.-....+..
T Consensus 593 PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFr--NtiIImTSN~Gs-~~i~~~~~~~~~~~~~~~~~~v~~ 669 (786)
T COG0542 593 PYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFR--NTIIIMTSNAGS-EEILRDADGDDFADKEALKEAVME 669 (786)
T ss_pred CCEEEEECHHHHCCHHHHHHHHHHHCCCCEECCCCCEEECC--EEEEEEECCCCH-HHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98688841264408899999999846780554899888430--028998450265-989753134321004678899999
Q ss_pred HHHH-CCHHHHHCCCEEEECCCCCHH
Q ss_conf 9851-224321004259983885668
Q gi|254781026|r 156 YQAR-ISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 156 Y~~r-ls~plldR~Dl~v~~~~~~~~ 180 (186)
-+++ +...||+|||-+|...+++..
T Consensus 670 ~l~~~F~PEFLNRid~II~F~~L~~~ 695 (786)
T COG0542 670 ELKKHFRPEFLNRIDEIIPFNPLSKE 695 (786)
T ss_pred HHHHHCCHHHHHHCCCEEECCCCCHH
T ss_conf 99853899898512617850679989
No 34
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.59 E-value=4.8e-15 Score=109.05 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=101.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||+|||||.+||.|+..|=. +.....+.+........-++-.-.+.+.+++.+......-.|.+-
T Consensus 601 FlGPTGVGKTElAK~LA~~LFg-------------~e~~liR~DMSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe~Vrr~ 667 (852)
T TIGR03345 601 LVGPSGVGKTETALALAELLYG-------------GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRK 667 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHCC-------------CCCCEEEECCHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 8789987789999999999719-------------861147842243210436878638999766748777210988809
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCC--C--CCCCCCCCCHHHH---
Q ss_conf 99889980387859889999999997195230100307898470156752274658878--8--9887643899999---
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMS--N--KDENVCIRGPRCA--- 153 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~--~--~~~~~c~c~~~~~--- 153 (186)
.+.|+++||+.+.+++|+|.|+|.|++|+++.+++..+-.- ++++|+|+|- |.. . ..+....-...+.
T Consensus 668 PysVvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~--NtIIImTSN~---Gs~~i~~~~~~~~~~~~~~~~~~~ 742 (852)
T TIGR03345 668 PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFK--NTVILLTSNA---GSDLIMALCADPETAPDPEALLEA 742 (852)
T ss_pred CCEEEEECHHHHCCHHHHHHHHHHHCCCEEECCCCCEEECE--EEEEEECCCH---HHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 98688861130028899999998724677757999988452--1299975724---479998640376555668999999
Q ss_pred --HHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf --999851224321004259983885668
Q gi|254781026|r 154 --TEYQARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 154 --~~Y~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
..-.+.+..-||+|||+.++- +++..
T Consensus 743 v~~~l~~~F~PEFlnRi~ii~F~-~L~~~ 770 (852)
T TIGR03345 743 LRPELLKVFKPAFLGRMTVIPYL-PLDDD 770 (852)
T ss_pred HHHHHHHHCCHHHHCCEEEEEEC-CCCHH
T ss_conf 99999834798886456689736-89999
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=1.3e-14 Score=106.55 Aligned_cols=119 Identities=28% Similarity=0.355 Sum_probs=80.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-HH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799-82
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-SL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~l 79 (186)
|.||||.||||||.-++.=|- +.++..+|..-. ....+ .+.+ .+
T Consensus 56 l~GPPGlGKTTLA~iiA~E~~----------~~~~~tsGP~le-----------------k~~DL--------~~iLt~l 100 (328)
T PRK00080 56 LYGPPGLGKTTLANIIANEMG----------VNIRITSGPALE-----------------KAGDL--------AALLTNL 100 (328)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCCEECCCCCCC-----------------CHHHH--------HHHHHHC
T ss_conf 658899889999999999868----------881562450016-----------------74789--------9999608
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCC------EEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 7998899803878598899999999971952301003------0789847015675227465887889887643899999
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARAN------RKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g------~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
..+-||||||+..+++.+-|.|+-||||.++.|.-+. ....+| .|.||+|+---
T Consensus 101 ~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~-pFTLIGATTr~------------------- 160 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRA------------------- 160 (328)
T ss_pred CCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCC-CEEEEECCCCC-------------------
T ss_conf 8787676506532488899885798775234578647865324555899-83474013676-------------------
Q ss_pred HHHHHHCCHHHHHCCCEEEECCCCC
Q ss_conf 9998512243210042599838856
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVPSRT 178 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~~~~ 178 (186)
..||.||+|||.++..+.--+
T Consensus 161 ----g~Ls~PLrdRFGi~~~l~~Y~ 181 (328)
T PRK00080 161 ----GLLTSPLRDRFGIVQRLEFYT 181 (328)
T ss_pred ----CCCCHHHHHHCCCEEEECCCC
T ss_conf ----657767897579336634589
No 36
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.54 E-value=3.9e-14 Score=103.70 Aligned_cols=158 Identities=19% Similarity=0.145 Sum_probs=103.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||+|||||.+|+.|+..| ..+.+-. +........-.+-.-.+.+..++.+......-.|.+-
T Consensus 493 f~GPTGVGKTElak~LA~~L----~~~lir~------------DMSEy~e~hsvsrLiGaPPGYVGy~eGG~Lte~Vr~~ 556 (758)
T PRK11034 493 FAGPTGVGKTEVTVQLSKAL----GIELLRF------------DMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH 556 (758)
T ss_pred EECCCCCCHHHHHHHHHHHH----HHHHHCC------------CHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf 97899877799999999998----6677214------------2665312014777448998666767777012878739
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC-------CCCCCCCCCCCCCCCHHHH
Q ss_conf 998899803878598899999999971952301003078984701567522746-------5887889887643899999
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC-------RCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc-------pcG~~~~~~~~c~c~~~~~ 153 (186)
.+.|+++||+.+.++++++.|+|.|++|+++.+.+..+-.- ++++|+|+|-= .-|+... .-+....
T Consensus 557 PysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr~vdF~--NtiIImTSN~Ga~~~~~~~~gf~~~-----~~~~~~~ 629 (758)
T PRK11034 557 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFR--NVVLVMTTNAGVRETERKSIGLIHQ-----DNSTDAM 629 (758)
T ss_pred CCEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECE--EEEEEEECCCCHHHHHHHCCCCCCC-----CCHHHHH
T ss_conf 87799733675639899998873237783017999988440--0199982561748786421475542-----0359999
Q ss_pred HHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 9998512243210042599838856688
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
....+.++.-+++|||-.|...+++...
T Consensus 630 ~~l~~~F~PEFlNRiD~ii~F~~L~~~~ 657 (758)
T PRK11034 630 EEIKKIFTPEFRNRLDNIIWFDHLSTDV 657 (758)
T ss_pred HHHHHHCCHHHHHHCCEEEEECCCCHHH
T ss_conf 9999547986772367478638899999
No 37
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.54 E-value=1.8e-14 Score=105.69 Aligned_cols=122 Identities=24% Similarity=0.334 Sum_probs=77.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH-H
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456827998-2
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-L 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-l 79 (186)
|.||||||||++|+-++.-+- +.++..++.. + .....+ -+.+. .
T Consensus 55 f~GPPG~GKTTlAriiAk~~~----------~~~~~~s~~~-----i------------~~~~di--------~~~l~~~ 99 (234)
T pfam05496 55 LYGPPGLGKTTLANIIANEMG----------VNIRITSGPA-----L------------EKPGDL--------AAILTNL 99 (234)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCEEEECCHH-----H------------HHHHHH--------HHHHHHC
T ss_conf 878999988899999998408----------7537614266-----6------------438999--------9999845
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEH--HCCE----EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 7998899803878598899999999971952301--0030----789847015675227465887889887643899999
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIA--RANR----KISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~--R~g~----~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
..+-||||||+..|++..+|.|+.+||+|.+.|- ++.. +...| .|.||+|+.--
T Consensus 100 ~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P-~FtLIgATTe~------------------- 159 (234)
T pfam05496 100 EPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLP-PFTLVGATTRA------------------- 159 (234)
T ss_pred CCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCC-CEEEEEECCCC-------------------
T ss_conf 8998899966543587688744553346169999636766324652689-75998521566-------------------
Q ss_pred HHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 9998512243210042599838856688
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
.+||.||++||.+...+...+..+
T Consensus 160 ----~~l~~pl~sR~~i~~~l~~l~~ed 183 (234)
T pfam05496 160 ----GLLTSPLRDRFGIVLRLEFYSVEE 183 (234)
T ss_pred ----CCCCHHHHHHHHHEEECCCCCHHH
T ss_conf ----647777997621124424689999
No 38
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.52 E-value=2.9e-14 Score=104.48 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=84.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCC-----CHHHCCCCCCCCCHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521-----001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV-----TIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~-----~~~~l~gg~~~~~pG 75 (186)
|+||+|||||++|+.++..|-.-. ...+..-++ .+...|... ...............
T Consensus 8 ~~GPsGvGKT~lAk~la~~l~~~~------~~~i~~dm~------------e~~~~~~v~~l~g~~~gyvg~~~~G~l~~ 69 (168)
T pfam07724 8 FLGPTGVGKTELAKALAELLFGDE------RALIRIDMS------------EYMEEHSVSRLIGAPPGYVGYEEGGQLTE 69 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC------CCEEEECCC------------CCCCHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 889899899999999999967985------344885575------------65425699987058998726242650789
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCC---CCC-CCCCCCCCCHH
Q ss_conf 99827998899803878598899999999971952301003078984701567522746588---788-98876438999
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCG---MSN-KDENVCIRGPR 151 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG---~~~-~~~~~c~c~~~ 151 (186)
.+....++|+||||+.+.++++++.|++.||+|+++...+. .+.+ .++++|+|+|----. ... .....-.-...
T Consensus 70 ~v~~~p~~VillDEIeKa~~~V~~~LL~ild~g~~~d~~g~-~v~~-~n~i~i~Tsn~g~~~~~~~~~~~~~~~~~~~~~ 147 (168)
T pfam07724 70 AVRRKPYSIVLIDEIEKAHPGVQNDLLQILEGGTLTDKQGR-KVDF-RNTLFIMTGNFGSEKISDASRLGKSPDYELLKE 147 (168)
T ss_pred HHHHCCCCEEEEHHHHHHCHHHHHHHHHHCCCCCEECCCCC-EEEC-CCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 99838984898657766589999999987058706369996-7844-647999768737299998630467854799999
Q ss_pred HHH-HHHHHCCHHHHHCCCEE
Q ss_conf 999-99851224321004259
Q gi|254781026|r 152 CAT-EYQARISGPLMDRIDIR 171 (186)
Q Consensus 152 ~~~-~Y~~rls~plldR~Dl~ 171 (186)
.+. .....+..-++.|||++
T Consensus 148 ~~~~~~~~~f~PEflnRid~i 168 (168)
T pfam07724 148 LVMDLLKKGFIPEFLGRLPII 168 (168)
T ss_pred HHHHHHHCCCCHHHHCCCCCC
T ss_conf 999999869884673575839
No 39
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.46 E-value=4.7e-14 Score=103.24 Aligned_cols=143 Identities=24% Similarity=0.282 Sum_probs=93.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
++|++|+||+.+|+.|+.+-... .+.-.|..-++......... .-| --..+.+.|...-++|.+-+|
T Consensus 106 i~GetGtGKel~A~~iH~~s~r~-----~~~PFI~~NCa~~~en~~~~--eLF------G~~kGaftGa~~~k~Glfe~A 172 (403)
T COG1221 106 IIGETGTGKELFARLIHALSARR-----AEAPFIAFNCAAYSENLQEA--ELF------GHEKGAFTGAQGGKAGLFEQA 172 (403)
T ss_pred EECCCCCCHHHHHHHHHHHHHCC-----CCCCEEEEEHHHHCCCHHHH--HHH------CCCCCEEECCCCCCCCHHEEC
T ss_conf 86688753889999999861213-----58987997777737677777--773------200000025667867642052
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
|+|+||+||+.++++..++.|+..||+|.+ .|-|.+...++++.+|+|+|--+ ...+ +
T Consensus 173 ~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~--~rvG~~~~~~~dVRli~AT~~~l--------------~~~~------~ 230 (403)
T COG1221 173 NGGTLFLDEIHRLPPEGQEKLLRVLEEGEY--RRVGGSQPRPVDVRLICATTEDL--------------EEAV------L 230 (403)
T ss_pred CCCEEEHHHHHHCCHHHHHHHHHHHHCCCE--EECCCCCCCCCCCEEEECCCCCH--------------HHHH------H
T ss_conf 797776563653798589999999871865--76688888677740451356687--------------9998------7
Q ss_pred CH-HHHH-CCCEEEECCCCC
Q ss_conf 24-3210-042599838856
Q gi|254781026|r 161 SG-PLMD-RIDIRIAVPSRT 178 (186)
Q Consensus 161 s~-plld-R~Dl~v~~~~~~ 178 (186)
.| -|.. |+.+.|.+|++.
T Consensus 231 ~g~dl~~rl~~~~I~LPpLr 250 (403)
T COG1221 231 AGADLTRRLNILTITLPPLR 250 (403)
T ss_pred HHCCHHHHHCCCEECCCCHH
T ss_conf 40525564167543189724
No 40
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.44 E-value=6.9e-13 Score=96.38 Aligned_cols=113 Identities=30% Similarity=0.402 Sum_probs=78.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH--
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456827998--
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-- 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-- 78 (186)
|.||||.||||||.-++.=|- ..++..+| ..--+||-+.
T Consensus 57 l~GPPGlGKTTLA~IIA~Emg----------vn~k~tsG-----------------------------p~leK~gDlaai 97 (332)
T COG2255 57 LFGPPGLGKTTLAHIIANELG----------VNLKITSG-----------------------------PALEKPGDLAAI 97 (332)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCEEECCC-----------------------------CCCCCHHHHHHH
T ss_conf 647998768889999999856----------77376366-----------------------------201572659999
Q ss_pred ---HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHC----CEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf ---2799889980387859889999999997195230100----3078984-7015675227465887889887643899
Q gi|254781026|r 79 ---LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARA----NRKISYP-SRIQLIAAMNPCRCGMSNKDENVCIRGP 150 (186)
Q Consensus 79 ---lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~----g~~~~~P-a~f~Lvaa~NPcpcG~~~~~~~~c~c~~ 150 (186)
+-.+-|||+||+..+++.+-|.|.-+|||.++.|.=+ ..+++++ ..|.||+|+--.
T Consensus 98 Lt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~---------------- 161 (332)
T COG2255 98 LTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA---------------- 161 (332)
T ss_pred HHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECCCC----------------
T ss_conf 8639867767772553147428989646753105778972487553476379981375101346----------------
Q ss_pred HHHHHHHHHCCHHHHHCCCEEEECC
Q ss_conf 9999998512243210042599838
Q gi|254781026|r 151 RCATEYQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 151 ~~~~~Y~~rls~plldR~Dl~v~~~ 175 (186)
.+||.||.|||.+...+.
T Consensus 162 -------G~lt~PLrdRFGi~~rle 179 (332)
T COG2255 162 -------GMLTNPLRDRFGIIQRLE 179 (332)
T ss_pred -------CCCCCHHHHHCCCEEEEE
T ss_conf -------645633688628604540
No 41
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.44 E-value=7.9e-14 Score=101.89 Aligned_cols=120 Identities=24% Similarity=0.306 Sum_probs=83.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
+.|..||||.++|++++..-|.-+.. .|.--++..+ ..+....-| .....+..|-...-+||.+-+|
T Consensus 273 i~GESGTGKElfA~~IH~~S~R~~~P------FIaiNCaAiP--e~LlESELF-----Gye~GAFTGA~~~GK~GlfE~A 339 (560)
T COG3829 273 ILGESGTGKELFARAIHNLSPRANGP------FIAINCAAIP--ETLLESELF-----GYEKGAFTGASKGGKPGLFELA 339 (560)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCCC------EEEEECCCCC--HHHHHHHHH-----CCCCCCCCCCCCCCCCCCEEEC
T ss_conf 95378866899999987448434798------0787643388--888888872-----7677642464457997605441
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCC
Q ss_conf 9988998038785988999999999719523010030789847015675227465
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCR 135 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcp 135 (186)
|+|.||||||++++...+..|+.+|+++ .+.|-|.+...|.++.+|||||--+
T Consensus 340 ~gGTLFLDEIgempl~LQaKLLRVLQEk--ei~rvG~t~~~~vDVRIIAATN~nL 392 (560)
T COG3829 340 NGGTLFLDEIGEMPLPLQAKLLRVLQEK--EIERVGGTKPIPVDVRIIAATNRNL 392 (560)
T ss_pred CCCEEEEHHHCCCCHHHHHHHHHHHHHC--EEEECCCCCCEEEEEEEEECCCCCH
T ss_conf 6983771232039989999999987535--3785378875356789994257589
No 42
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.43 E-value=2.5e-13 Score=99.01 Aligned_cols=58 Identities=29% Similarity=0.409 Sum_probs=44.8
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 8899803878598899999999971952301003078984701567522--74658878898876438999999998512
Q gi|254781026|r 83 GVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM--NPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 83 GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~--NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
-|||||||..|++.-+|.|+..+|+|+| +||||+ ||- + .+
T Consensus 111 tILFIDEIHRfNK~QQD~LLp~vE~G~i---------------~LIGATTENP~----F-------------------~v 152 (726)
T PRK13341 111 TILFIDEVHRFNKAQQDALLPWVENGTV---------------TLIGATTENPY----F-------------------EV 152 (726)
T ss_pred EEEEEECHHHCCHHHHHHHHHHHCCCEE---------------EEEEECCCCCC----E-------------------EE
T ss_conf 5999862542588789987888606838---------------99970478974----3-------------------64
Q ss_pred CHHHHHCCCEEEECCCCCH
Q ss_conf 2432100425998388566
Q gi|254781026|r 161 SGPLMDRIDIRIAVPSRTH 179 (186)
Q Consensus 161 s~plldR~Dl~v~~~~~~~ 179 (186)
..||++|.-+...- +++.
T Consensus 153 n~ALlSR~~vf~L~-~L~~ 170 (726)
T PRK13341 153 NKALVSRSRLFRLK-SLED 170 (726)
T ss_pred CHHHHHHCEEEEEC-CCCH
T ss_conf 29888323466743-8999
No 43
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.42 E-value=5.4e-13 Score=97.02 Aligned_cols=104 Identities=30% Similarity=0.391 Sum_probs=79.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCC-----CCCCHHHCCC-------CC
Q ss_conf 77786059999999887488989788532300000027888756531112020377-----5210011023-------43
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPH-----HSVTIAALIG-------GG 69 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~-----~~~~~~~l~g-------g~ 69 (186)
.|.+||||.++||.|+..-+. ... ||.... .+..+..++| |.
T Consensus 215 ~GEtGTGKelvAr~IH~~S~R--------------------~~~------Pfv~vNCaalpe~l~EseLFGh~kGaFtGA 268 (510)
T PRK05022 215 TGETGVGKELVARAIHQASPR--------------------AVK------PLVYLNCAALPESLAESELFGHVKGAFTGA 268 (510)
T ss_pred ECCCCCCHHHHHHHHHHCCCC--------------------CCC------CCEEEECCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 898981399999999966887--------------------899------857888999985678998659777886886
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 4568279982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
..-++|.+.+||+|.|||||+++++..++..|+.++++|. +.|.|.....+.++.+|+|+|-
T Consensus 269 ~~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~--iqrvG~~~~~~vdvRIIAATnr 330 (510)
T PRK05022 269 ISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGE--IQRVGSDRSLRVDVRVIAATNR 330 (510)
T ss_pred CCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCE--EEECCCCCEEEEEEEEEEECCC
T ss_conf 5567881017789879875745499999999999984795--8855899466666899960783
No 44
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.40 E-value=7.1e-13 Score=96.30 Aligned_cols=104 Identities=22% Similarity=0.286 Sum_probs=82.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCC-----CCCCHHHCCCCCCCCCHHH
Q ss_conf 77786059999999887488989788532300000027888756531112020377-----5210011023434568279
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPH-----HSVTIAALIGGGLQVLPGE 76 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~-----~~~~~~~l~gg~~~~~pG~ 76 (186)
.|..||||.++||+++..-+. .. .||.... ....+..++|....-++|.
T Consensus 233 ~GEsGTGKellAraIH~~S~R--------------------~~------~pFv~vnC~alp~~l~eseLFG~a~~~~~G~ 286 (513)
T PRK10820 233 TGDTGTGKDLFAYACHLASPR--------------------AK------KPYLALNCASIPEDAVESELFGHAPEGKKGF 286 (513)
T ss_pred ECCCCCCHHHHHHHHHHCCCC--------------------CC------CCCEEEECCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 898982499999999966887--------------------89------9826888998996789998638766688975
Q ss_pred HHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r 77 DSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 77 i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
+.+||+|.|||||+.++++..+..|+.+++++.+ .|.|.....+.++.+|+|+|-
T Consensus 287 fe~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~--~rvG~~~~~~~dvRiIaaT~~ 341 (513)
T PRK10820 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF--RRVGEDHEVHVDVRVICATQK 341 (513)
T ss_pred EEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEE--EECCCCCEEEEEEEEEECCCH
T ss_conf 5785898899978365999999999999868979--965998535677899962653
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.39 E-value=1.4e-12 Score=94.50 Aligned_cols=111 Identities=26% Similarity=0.390 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|.||||||||++|+-++.-+-- .+........... ....++..... ....
T Consensus 42 l~GPPG~GKTTlA~iiA~~~~~----------~f~~lnA~~~gv~---------------dir~ii~~a~~-----~~~~ 91 (417)
T PRK13342 42 LWGPPGTGKTTLARIIAGATDA----------EFEALSAVTSGVK---------------DLREVIEEAKQ-----SRLG 91 (417)
T ss_pred EECCCCCCHHHHHHHHHHHHCC----------CEEEEECCCCCHH---------------HHHHHHHHHHH-----HHCC
T ss_conf 8896999899999999998689----------8899614103889---------------99999999886-----3148
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 998899803878598899999999971952301003078984701567522--746588788988764389999999985
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM--NPCRCGMSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~--NPcpcG~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
.+=||||||+..|++..+|.||..+|+|.+ +||||+ ||-.
T Consensus 92 ~~tilfiDEIHRfnK~QQD~LLp~vE~g~i---------------iLIgATTENP~f----------------------- 133 (417)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENPSF----------------------- 133 (417)
T ss_pred CCEEEEEECHHHCCHHHHHHHHHHHHCCCE---------------EEEEECCCCCHH-----------------------
T ss_conf 965999978200588999999875112656---------------999741579225-----------------------
Q ss_pred HCCHHHHHCCCEEEECCCCCHH
Q ss_conf 1224321004259983885668
Q gi|254781026|r 159 RISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 159 rls~plldR~Dl~v~~~~~~~~ 180 (186)
.+..||++|.-+. .+.+++..
T Consensus 134 ~in~aLlSRc~vf-~l~~L~~~ 154 (417)
T PRK13342 134 EVNPALLSRAQVF-ELKPLSEE 154 (417)
T ss_pred HCCHHHHHHHHHE-ECCCCCHH
T ss_conf 3489898565700-20589999
No 46
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.37 E-value=1.4e-12 Score=94.50 Aligned_cols=105 Identities=28% Similarity=0.387 Sum_probs=78.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCC-----CCCHHHCCC-------CC
Q ss_conf 777860599999998874889897885323000000278887565311120203775-----210011023-------43
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHH-----SVTIAALIG-------GG 69 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~-----~~~~~~l~g-------g~ 69 (186)
.|++||||+++||.++..-+.- . .||....- ...+..++| |.
T Consensus 28 ~GE~GtGK~~lAr~IH~~S~r~--------------------~------~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga 81 (168)
T pfam00158 28 TGESGTGKELFARAIHQLSPRA--------------------D------GPFVAVNCAAIPEELLESELFGHEKGAFTGA 81 (168)
T ss_pred ECCCCCCHHHHHHHHHHHCCCC--------------------C------CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 8999888899999999852435--------------------6------8831256789987799998758766766898
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 45682799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
...++|.+..|++|+|||||+.+++..++..|++.++++++ .|.|.....+.++.+|++++.-
T Consensus 82 ~~~~~G~le~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~--~~~g~~~~~~~~vRiIast~~~ 144 (168)
T pfam00158 82 VSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEF--ERVGGTKPIKVDVRIIAATNRD 144 (168)
T ss_pred CCCCCCCEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCEE--EECCCCCEEEEEEEEEEECCCC
T ss_conf 75789964226998788024413999999999999857969--9779984588854999965988
No 47
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.36 E-value=1.8e-12 Score=93.98 Aligned_cols=133 Identities=24% Similarity=0.292 Sum_probs=91.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCC-----CCCHHHCCC-------CC
Q ss_conf 777860599999998874889897885323000000278887565311120203775-----210011023-------43
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHH-----SVTIAALIG-------GG 69 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~-----~~~~~~l~g-------g~ 69 (186)
.|.+||||..+||.++..-+. . ..||....- ...+..++| |.
T Consensus 172 ~GEsGTGKe~~Ar~IH~~S~r--------------------~------~~pFv~vnc~ai~~~l~eseLFG~~kgaftga 225 (457)
T PRK11361 172 SGESGTGKELIARAIHYNSRR--------------------A------KGPFIKVNCAALPESLLESELFGHEKGAFTGA 225 (457)
T ss_pred ECCCCCCHHHHHHHHHHHCCC--------------------C------CCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 889985789999999983798--------------------8------99838764787985778999718766787885
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 45682799827998899803878598899999999971952301003078984701567522746588788988764389
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRG 149 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~ 149 (186)
...++|.+.+||+|.|||||+.+++...+..|+..++++.+ .|.|.+...+.++.+|+|+|--.-
T Consensus 226 ~~~~~G~~e~A~gGTLfLdeI~~l~~~~Q~kLLr~L~~~~~--~~~g~~~~~~~dvRiIaaT~~~L~------------- 290 (457)
T PRK11361 226 QTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREF--ERIGGHQTIKVDIRIIAATNRDLQ------------- 290 (457)
T ss_pred CCCCCCCHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCE--EECCCCCEEEECCEEEECCCCCHH-------------
T ss_conf 31469861335998263146645239999999999864927--856997136653489965787859-------------
Q ss_pred HHHHHHHHHHCCHHHHHCCC-EEEECCCCC
Q ss_conf 99999998512243210042-599838856
Q gi|254781026|r 150 PRCATEYQARISGPLMDRID-IRIAVPSRT 178 (186)
Q Consensus 150 ~~~~~~Y~~rls~plldR~D-l~v~~~~~~ 178 (186)
..+. .+++..-|.-|+. +.+.+|++-
T Consensus 291 -~~v~--~g~Fr~DLyyrL~~~~i~lPpLR 317 (457)
T PRK11361 291 -AMVK--EGTFREDLFYRLNVIHLILPPLR 317 (457)
T ss_pred -HHHH--CCCCHHHHHHHHCEEEEECCCHH
T ss_conf -9987--58323889953022125173854
No 48
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.36 E-value=2.3e-12 Score=93.26 Aligned_cols=106 Identities=24% Similarity=0.325 Sum_probs=78.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECC-----CCCCCHHHCCC----CCCC
Q ss_conf 97778605999999988748898978853230000002788875653111202037-----75210011023----4345
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSP-----HHSVTIAALIG----GGLQ 71 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~-----~~~~~~~~l~g----g~~~ 71 (186)
+.|.+||||+++|+.++.--+. .. .||... .....+..++| ....
T Consensus 353 I~GE~GtGKe~lAraIH~~S~r--------------------~~------~pfv~vnC~ai~~~~~e~elfG~~~~~~~~ 406 (639)
T PRK11388 353 LCGEEGVGKALLAQAIHNESER--------------------AA------GPYIAVNCQLLPDEALAEEFLGSDRTDSEN 406 (639)
T ss_pred EECCCCCCHHHHHHHHHHCCCC--------------------CC------CCEEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 8898981099999999955777--------------------89------981898789898467899873877676434
Q ss_pred CCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 682799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 72 VLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 72 ~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
-++|.+.+||+|.|||||+++++...+..|+.+++++.+ .|.|.....|.++.+|+|+|-.
T Consensus 407 g~~g~~e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~--~r~g~~~~~~vdvRiiaat~~~ 467 (639)
T PRK11388 407 GRLSKFELAHGGTLFLEKVEYLSVELQSALLQVLKTGVI--TRLDSRRLIPVDVRVIATTTAD 467 (639)
T ss_pred CCCCHHHCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCE--EECCCCCEEEEEEEEEEECCHH
T ss_conf 668624403698288467264999999999999865937--8569994666427999736450
No 49
>CHL00181 cbbX CbbX; Provisional
Probab=99.35 E-value=1.1e-12 Score=95.11 Aligned_cols=130 Identities=21% Similarity=0.252 Sum_probs=81.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|.|||||||||.||.++.|+- ..|....+ .++....+.-.+..+|....-.-..|-.|
T Consensus 64 F~GnPGTGKTTVARl~a~il~---------------~lG~L~~g-------~vve~~r~dLvg~yvG~Ta~kt~~~i~~a 121 (287)
T CHL00181 64 FTGSPGTGKTTVALKMADILY---------------RLGYIKKG-------HLITVTRDDLVGQYIGHTAPKTKEVLKKA 121 (287)
T ss_pred EECCCCCCHHHHHHHHHHHHH---------------HCCCCCCC-------EEEEECHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf 878998679999999999999---------------86995589-------58995358841635352169999999964
Q ss_pred CCCEEEEECHHH---------CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 998899803878---------59889999999997195230100307898470156752274658878898876438999
Q gi|254781026|r 81 HNGVLFLDEIPE---------FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPR 151 (186)
Q Consensus 81 h~GVLflDE~~e---------~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~ 151 (186)
-+|||||||.-- |...+++.|++.||+.+- ++.+|.| || +.
T Consensus 122 ~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~~~-------------~lvvI~A------GY-----------~~ 171 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRD-------------DLVVIFA------GY-----------KD 171 (287)
T ss_pred CCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-------------CEEEEEE------CC-----------HH
T ss_conf 598799824465357889998379999999999870799-------------8899984------67-----------89
Q ss_pred HHHHHHHHCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 99999851224321004259983885668885
Q gi|254781026|r 152 CATEYQARISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 152 ~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
+..+.+. ...-|-+||...+..++-+..++.
T Consensus 172 eM~~fl~-~NpGL~sRf~~~i~F~dYt~~EL~ 202 (287)
T CHL00181 172 RMDKFYE-SNPGLSSRVANHVDFPDYTPEELL 202 (287)
T ss_pred HHHHHHH-HCCCHHHHCCCEEECCCCCHHHHH
T ss_conf 9999998-590478768872377985999999
No 50
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=99.33 E-value=2e-12 Score=93.66 Aligned_cols=105 Identities=29% Similarity=0.435 Sum_probs=83.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEE-----CCCCCCCHHHCCCCCCCCCHH
Q ss_conf 977786059999999887488989788532300000027888756531112020-----377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFR-----SPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~-----~~~~~~~~~~l~gg~~~~~pG 75 (186)
|-|.-||||=.+||+|+..-|. . .+||+ +..-+.-+.-|+|-+...-.|
T Consensus 240 lRGESGTGKEl~A~AIH~~SpR--------------------~------~~PFVK~NCAALse~lLESELFGHEKGAFTG 293 (574)
T TIGR01817 240 LRGESGTGKELIAKAIHELSPR--------------------A------KRPFVKLNCAALSETLLESELFGHEKGAFTG 293 (574)
T ss_pred EECCCCCCHHHHHHHHCCCCCC--------------------C------CCCCEEEECCCCCCCHHHHHHHCCCCHHHHH
T ss_conf 5056574433444234046645--------------------5------7885450064477611245451343014688
Q ss_pred HHH-------HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 998-------2799889980387859889999999997195230100307898470156752274
Q gi|254781026|r 76 EDS-------LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 76 ~i~-------lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
+|. +||||.||||||+|.+|.=+-.||=+|.+| ..+|-|.+-|+.-+..||+|+|=
T Consensus 294 A~~~RkGRFElAdGGTLFLDEIGEISPaFQAKLLRVLQEG--EFERVGG~~TlKVdVRlvaATNr 356 (574)
T TIGR01817 294 AVAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEG--EFERVGGNRTLKVDVRLVAATNR 356 (574)
T ss_pred HHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCC--CEEEECCCEEEEEEEEEEECCCC
T ss_conf 8751777533027883200001467856888998875210--02532787248873678861373
No 51
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=7e-12 Score=90.48 Aligned_cols=122 Identities=30% Similarity=0.417 Sum_probs=78.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC-----CCCCCHH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234-----3456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGG-----GLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg-----~~~~~pG 75 (186)
|.||||||||++|++++..+..- ...++. +.. +.........+ .....-+
T Consensus 24 l~GppGtGKT~la~~ia~~~~~~--------------------~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 24 LYGPPGTGKTTLARAIANELFRP--------------------GAPFLY---LNA--SDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred EECCCCCCHHHHHHHHHHHHCCC--------------------CCCEEE---EEH--HHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98999988659999999971213--------------------798278---547--77046777757605778898999
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99827998899803878598899999999971952301003078984701567522746588788988764389999999
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATE 155 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~ 155 (186)
....+.++||||||++.+.+...+.+++.++...... ....++.+|+++|.-.-
T Consensus 79 ~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~-------~~~~~~~vI~~tn~~~~------------------- 132 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL------------------- 132 (151)
T ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCC-------CCCCCEEEEEEECCCCC-------------------
T ss_conf 9997699869820166559999999999998715754-------06788899995289988-------------------
Q ss_pred HHHHCCHHHHHCCCEEEECC
Q ss_conf 98512243210042599838
Q gi|254781026|r 156 YQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 156 Y~~rls~plldR~Dl~v~~~ 175 (186)
..+..++.+|||.++.++
T Consensus 133 --~~~~~~~~~R~~~~i~~~ 150 (151)
T cd00009 133 --GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred --CCHHHHHHCCCCEEEECC
T ss_conf --683776425598698638
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.29 E-value=5e-12 Score=91.35 Aligned_cols=106 Identities=27% Similarity=0.385 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH-
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568279982-
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL- 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l- 79 (186)
|.||||||||++|+.++.-.- ..+...+. .-.+... + ...++-..-.+
T Consensus 53 l~GPPG~GKTTlA~liA~~~~----------~~f~~~sA----------------v~~gvkd--l---r~i~e~a~~~~~ 101 (436)
T COG2256 53 LWGPPGTGKTTLARLIAGTTN----------AAFEALSA----------------VTSGVKD--L---REIIEEARKNRL 101 (436)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCEEEECC----------------CCCCHHH--H---HHHHHHHHHHHH
T ss_conf 778999888899999987617----------76699515----------------2346799--9---999999999872
Q ss_pred -CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -7998899803878598899999999971952301003078984701567522--7465887889887643899999999
Q gi|254781026|r 80 -AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM--NPCRCGMSNKDENVCIRGPRCATEY 156 (186)
Q Consensus 80 -Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~--NPcpcG~~~~~~~~c~c~~~~~~~Y 156 (186)
-.+=|||+||+..|++.-+|.|+-.||+|.| +||||+ ||-.
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i---------------ilIGATTENPsF--------------------- 145 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLPHVENGTI---------------ILIGATTENPSF--------------------- 145 (436)
T ss_pred CCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEE---------------EEEECCCCCCCE---------------------
T ss_conf 58834998722533374456551033248868---------------999626789871---------------------
Q ss_pred HHHCCHHHHHCCCEEEECC
Q ss_conf 8512243210042599838
Q gi|254781026|r 157 QARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 157 ~~rls~plldR~Dl~v~~~ 175 (186)
.+..+||+|--+.+--|
T Consensus 146 --~ln~ALlSR~~vf~lk~ 162 (436)
T COG2256 146 --ELNPALLSRARVFELKP 162 (436)
T ss_pred --EECHHHHHHHHEEEEEC
T ss_conf --40388861104156516
No 53
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.26 E-value=1.3e-11 Score=88.81 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=78.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCC-------CCCCCCH
Q ss_conf 777860599999998874889897885323000000278887565311120203775210011023-------4345682
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIG-------GGLQVLP 74 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~g-------g~~~~~p 74 (186)
.|++||||.++||.++..-+. ....++.- ..........+..++| |....++
T Consensus 167 ~GE~GTGK~~~Ar~IH~~S~r--------------------~~~pfi~v-nC~~~~~~~~e~eLFG~~~gaf~ga~~~~~ 225 (469)
T PRK10923 167 NGESGTGKELVAHALHRHSPR--------------------AKAPFIAL-NMAAIPKDLIESELFGHEKGAFTGANTIRQ 225 (469)
T ss_pred ECCCCCCHHHHHHHHHHCCCC--------------------CCCCCEEE-ECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 898982699999999974887--------------------79995787-678899778999970876678788642458
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
|.+-.|++|.|||||+.++++..+..|+..++++.+ .|-|.....+.++.+|+++|--
T Consensus 226 g~~e~a~~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~--~~~g~~~~~~~d~RiIaat~~~ 283 (469)
T PRK10923 226 GRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQF--YRVGGYAPVKVDVRIIAATHQN 283 (469)
T ss_pred CCHHHCCCCCEEHHHHHHCCHHHHHHHHHHHHCCCE--EECCCCCEEEECCEEEEECCCC
T ss_conf 736643899265663664899999999999855937--8579985122143799707879
No 54
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=99.26 E-value=1e-11 Score=89.49 Aligned_cols=126 Identities=27% Similarity=0.361 Sum_probs=91.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCC---CCCCCC-HHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023---434568-279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIG---GGLQVL-PGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~g---g~~~~~-pG~ 76 (186)
|-|-|||||||.||-++.|+-.| |.+.++..+- +-.+.|+| |-...+ =-.
T Consensus 47 FKGNPGTGKTTVAR~~gklf~em---------------nvL~KGH~iE-----------~ERADLVGEYIGHTAqkTRe~ 100 (261)
T TIGR02881 47 FKGNPGTGKTTVARLLGKLFKEM---------------NVLSKGHLIE-----------VERADLVGEYIGHTAQKTREV 100 (261)
T ss_pred EECCCCCCHHHHHHHHHHHHHHC---------------CCCCCCCEEE-----------EEECCCCCCCCCCHHHHHHHH
T ss_conf 42786684389999999998533---------------7567886788-----------762221223203004899999
Q ss_pred HHHCCCCEEEEECHH--------HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 982799889980387--------859889999999997195230100307898470156752274658878898876438
Q gi|254781026|r 77 DSLAHNGVLFLDEIP--------EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIR 148 (186)
Q Consensus 77 i~lAh~GVLflDE~~--------e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c 148 (186)
|-+|-|||||+||.= -|-+..+|.|=..|||.+. +|.||-| ||...
T Consensus 101 ~kkA~GGvLFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~~-------------~lvlILA------GY~~E------- 154 (261)
T TIGR02881 101 IKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQRN-------------ELVLILA------GYSDE------- 154 (261)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC-------------CEEEEEE------CCHHH-------
T ss_conf 998638800557777761488887662088899998761569-------------8689970------87689-------
Q ss_pred CHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 99999999851224321004259983885668885
Q gi|254781026|r 149 GPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 149 ~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
=.|.-.+.+=|-+||-|.++.|+=+..+++
T Consensus 155 -----M~yFL~~NPGL~SRFPi~i~FPdY~~eeL~ 184 (261)
T TIGR02881 155 -----MDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred -----HHHHHHCCCCCCCCCCCEEECCCCCHHHHH
T ss_conf -----999862077977766505418899888999
No 55
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=9e-12 Score=89.85 Aligned_cols=109 Identities=25% Similarity=0.322 Sum_probs=82.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHH-------HCCCCCCCCCH
Q ss_conf 77786059999999887488989788532300000027888756531112020377521001-------10234345682
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIA-------ALIGGGLQVLP 74 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~-------~l~gg~~~~~p 74 (186)
.|..||||..+||+++.+-|.-. ..++.. .-.+...+.-+. +-+.|...-++
T Consensus 252 ~GETGtGKElvAraIH~~S~R~~--------------------kPfV~~-NCAAlPesLlESELFGHeKGAFTGA~~~r~ 310 (550)
T COG3604 252 RGETGTGKELVARAIHQLSPRRD--------------------KPFVKL-NCAALPESLLESELFGHEKGAFTGAINTRR 310 (550)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCC--------------------CCCEEE-ECCCCCHHHHHHHHHCCCCCCCCCCHHCCC
T ss_conf 45888538999999987375557--------------------986663-122253788888874533223335101467
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 79982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
|..-+||||.||+||++|++...+-.|+-++.+| .|+|-|..-++..+..+|||+|-
T Consensus 311 GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQeg--EieRvG~~r~ikVDVRiIAATNR 367 (550)
T COG3604 311 GRFELADGGTLFLDEIGELPLALQAKLLRVLQEG--EIERVGGDRTIKVDVRVIAATNR 367 (550)
T ss_pred CCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHC--CEEECCCCCEEEEEEEEEECCCH
T ss_conf 6356557975760220367877889999998636--52534799636777899821353
No 56
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.23 E-value=1.2e-11 Score=89.04 Aligned_cols=106 Identities=26% Similarity=0.365 Sum_probs=78.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCC-----CCCHHHCCC-------C
Q ss_conf 9777860599999998874889897885323000000278887565311120203775-----210011023-------4
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHH-----SVTIAALIG-------G 68 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~-----~~~~~~l~g-------g 68 (186)
+.|.+||||..+||.++..-+. .. .||....- ...+..++| |
T Consensus 167 I~GE~GTGK~~~Ar~IH~~S~r--------------------~~------~pfv~vnC~~l~~~l~eseLFG~~~gaftg 220 (441)
T PRK10365 167 IHGDSGTGKELVARAIHASSAR--------------------SE------KPLVTLNCAALNESLLESELFGHEKGAFTG 220 (441)
T ss_pred EECCCCHHHHHHHHHHHHCCCC--------------------CC------CCCEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 9899981099999999965787--------------------78------980798789898455589861775568789
Q ss_pred CCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 345682799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 69 GLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 69 ~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
....++|.+..|++|.|||||+.+++...+..|+..++++.+ .|-|.....+.++.+|+|+|--
T Consensus 221 a~~~~~g~~~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~--~~~g~~~~~~~d~RiIaat~~~ 284 (441)
T PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred CCCCCCCCEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCCCEEECCCEEEECCCCC
T ss_conf 653468987788998255023152999999999987775210--0058873441363799837889
No 57
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.21 E-value=3.2e-11 Score=86.61 Aligned_cols=104 Identities=23% Similarity=0.286 Sum_probs=80.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCC-----C-------HHHCCCCC
Q ss_conf 77786059999999887488989788532300000027888756531112020377521-----0-------01102343
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV-----T-------IAALIGGG 69 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~-----~-------~~~l~gg~ 69 (186)
.|..||||-.+||.|+..-+.- . .||....-.+ . +++-+.|.
T Consensus 170 ~GESGtGKElvAr~IH~~S~R~--------------------~------~PFVavNcaAip~~l~ESELFGhekGAFTGA 223 (464)
T COG2204 170 TGESGTGKELVARAIHQASPRA--------------------K------GPFIAVNCAAIPENLLESELFGHEKGAFTGA 223 (464)
T ss_pred ECCCCCCHHHHHHHHHHHCCCC--------------------C------CCCEEEECCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 7789875899999998607445--------------------8------9925633464898887777614565676776
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 4568279982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
..-+.|.+-.||+|+||||||.+++.+++..|+.+++++ .+.|-|.+...+.+..+|+|+|-
T Consensus 224 ~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~--~~~rvG~~~~i~vdvRiIaaT~~ 285 (464)
T COG2204 224 ITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQER--EFERVGGNKPIKVDVRIIAATNR 285 (464)
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--EEEECCCCCEECEEEEEEEECCC
T ss_conf 434576157737965873231109999999999998707--06735888600001699960577
No 58
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.20 E-value=5.3e-12 Score=91.19 Aligned_cols=141 Identities=28% Similarity=0.354 Sum_probs=91.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC-CCCC-CCCHHHHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102-3434-56827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI-GGGL-QVLPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~-gg~~-~~~pG~i~ 78 (186)
|+||||||||+++|+++..+-..+.-|.+=... +.+.. +. ...+..++- .|.. ....|-+.
T Consensus 44 llGPPGtAKS~larrl~~~~~~a~~FeyLltRF-------stPeE-lF---------GP~si~~Lk~~g~y~R~t~G~LP 106 (498)
T PRK13531 44 LLGPPGIAKSLIARRLKFAFQHARAFEYLMTRF-------STPEE-VF---------GPLSIQALKDEGRYERLTSGYLP 106 (498)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC-------CCHHH-HC---------CCCCHHHHHHCCEEEEECCCCCC
T ss_conf 888995138899999999855740899998746-------98888-53---------83329987117848972267588
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 27998899803878598899999999971952301003078984701567522746588788988764389999999985
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
.|| |.|+||+=+.++.++|+|+..+.+... ..++..+..|-+ .+|+|+|--|.+..+
T Consensus 107 ~A~--iaFLDEIfKansAILNtLLtilNEr~f--~nG~~~~~vPL~-~li~ASNElP~~~~~------------------ 163 (498)
T PRK13531 107 EAE--IVFLDEIWKAGPAILNTLLTAINERRF--RNGAHEEKIPMR-LLVAASNELPEADSS------------------ 163 (498)
T ss_pred CCE--EEHHHHHHHCCHHHHHHHHHHHHHHEE--CCCCCEECCCHH-HHHHCCCCCCCCCCC------------------
T ss_conf 661--315787861488999999998646403--479831304468-864304679999840------------------
Q ss_pred HCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 1224321004259983885668885
Q gi|254781026|r 159 RISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 159 rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
| .+|-|||=++++|..+.+...+
T Consensus 164 -L-~AlyDRfL~R~~v~~v~~~~nF 186 (498)
T PRK13531 164 -L-EALYDRMLIRLWLDKVQDKANF 186 (498)
T ss_pred -H-HHHHHHHHHHEECCCCCCHHHH
T ss_conf -7-8888764410223131676679
No 59
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=99.20 E-value=4.9e-12 Score=91.38 Aligned_cols=144 Identities=24% Similarity=0.337 Sum_probs=96.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
.||..||||=.+|.||+-|-.. .+.. .-++.... -..+++..--|- | +++-+.|...-+.|--=+|
T Consensus 27 iiGERGTGKELiA~RLHyLS~R------W~~P-lv~LNCAA-Lse~LldSELFG---H---EaGAFTGA~~rh~GRFERA 92 (349)
T TIGR02974 27 IIGERGTGKELIAARLHYLSKR------WQQP-LVKLNCAA-LSENLLDSELFG---H---EAGAFTGAKKRHEGRFERA 92 (349)
T ss_pred EEECCCCCHHHHHHHHHHHHHH------HCCC-CEEEECCC-CCCHHHHHHHHH---H---CCCCHHHHCCCCCCCCEEC
T ss_conf 8614674689999885332465------5488-62661012-782555566531---0---0100130304688985443
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
++|.|||||++-.+..|+|.||=+.|=| .++|.|++.++.++..||||+|-= +. .- .-..++
T Consensus 93 dGGTLFLDElAtas~~VQEKLLRViEYG--~fERVGG~~~l~vDVRlvaATN~D----LP----------~l--A~~G~F 154 (349)
T TIGR02974 93 DGGTLFLDELATASLAVQEKLLRVIEYG--EFERVGGSQTLKVDVRLVAATNAD----LP----------AL--AAEGRF 154 (349)
T ss_pred CCCCCHHHHHHCCCHHHHHHHHHHHCCC--CEEECCCCCEEEECCEEEECCCCC----HH----------HH--HHCCCC
T ss_conf 6887388887142167678661201013--033017860477351367621413----69----------89--865898
Q ss_pred CHHHHHC--CCEEEECCCC
Q ss_conf 2432100--4259983885
Q gi|254781026|r 161 SGPLMDR--IDIRIAVPSR 177 (186)
Q Consensus 161 s~plldR--~Dl~v~~~~~ 177 (186)
=.=|||| ||. |.+|++
T Consensus 155 RaDLLDRLAFDV-i~LPPL 172 (349)
T TIGR02974 155 RADLLDRLAFDV-ITLPPL 172 (349)
T ss_pred CCHHHHHHHHHH-CCCCCC
T ss_conf 401455445655-079788
No 60
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.20 E-value=6.3e-11 Score=84.89 Aligned_cols=105 Identities=29% Similarity=0.418 Sum_probs=75.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCC-----CCCCHHHCCC-------C
Q ss_conf 977786059999999887488989788532300000027888756531112020377-----5210011023-------4
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPH-----HSVTIAALIG-------G 68 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~-----~~~~~~~l~g-------g 68 (186)
+.|.+||||+++||.++..-+.- . .||.... .......++| |
T Consensus 34 I~GE~GtGK~~~Ar~IH~~S~r~--------------------~------~pfi~v~C~~l~~~~~e~~LFG~~~g~~~~ 87 (325)
T PRK11608 34 IIGERGTGKELIASRLHYLSSRW--------------------Q------GPFISLNCAALNENLLDSELFGHEAGAFTG 87 (325)
T ss_pred EECCCCCCHHHHHHHHHHCCCCC--------------------C------CCCEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 88989837999999999658867--------------------9------997788779899778899872775567677
Q ss_pred CCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 34568279982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r 69 GLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 69 ~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
.....+|.+-+|++|.|||||+..++...++.|++.++++. +.|.|.....+.++.+|+++|-
T Consensus 88 ~~~~~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~--~~r~g~~~~~~~~~RiIa~t~~ 150 (325)
T PRK11608 88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGE--LERVGGSQPLQVNVRLVCATNA 150 (325)
T ss_pred CCCCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCC--EEECCCCCCCCCCEEEEECCCH
T ss_conf 53246873435689869973745479999999999986490--8857998766564688713322
No 61
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.15 E-value=4.2e-11 Score=85.89 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=85.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|.|.-||||=.+||+++.+-+.-+. -..-+. ++..+ ..+....-|- -+++-+.|...-..|.|-.|
T Consensus 170 lLGESGTGKEV~ArA~H~~S~R~~~-~FVAIN-----CAAIP--EnLLEsELFG------yEKGAFTGA~k~T~GKIE~A 235 (451)
T TIGR02915 170 LLGESGTGKEVLARALHELSDRKDK-RFVAIN-----CAAIP--ENLLESELFG------YEKGAFTGAVKQTLGKIEYA 235 (451)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCC-CEEEEE-----CCCCC--CHHHHHHHHC------CCCHHHHHHHCCCCCCEEEE
T ss_conf 1046671178999898420578977-734441-----67457--5246677603------41012422003477616750
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 99889980387859889999999997195230100307898470156752274
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
|+|.||||||++++-..+-.||--|.+. .|+|-|+--..|-|..+|+|+|-
T Consensus 236 ~~GTLFLDEIGDLP~~LQAKLLRFLQEr--VIER~GGR~eIPVDVRvvCATnq 286 (451)
T TIGR02915 236 HGGTLFLDEIGDLPLNLQAKLLRFLQER--VIERLGGREEIPVDVRVVCATNQ 286 (451)
T ss_pred CCCCCCCCCHHCCCHHHHHHHHHHHHHH--HHHCCCCCCCCCCCEEEEECCCH
T ss_conf 6883011112206766899999875466--63105887245614267503224
No 62
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.15 E-value=1.6e-10 Score=82.46 Aligned_cols=113 Identities=27% Similarity=0.389 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH---
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799---
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED--- 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i--- 77 (186)
|.||||||||++|+.++.-+-- .+.++.+.. +. ....|......-..+
T Consensus 3 l~GppGtGKT~~a~~la~~~~~----------~~~~v~~~~-----~~--------------~~~~g~~~~~i~~~f~~a 53 (131)
T pfam00004 3 LYGPPGTGKTTLAKAVAKELGA----------PFIEISGSE-----LV--------------SKYVGESEKRLRELFEAA 53 (131)
T ss_pred EECCCCCCHHHHHHHHHHHHCC----------CCEECCCCC-----CC--------------CCCCCHHHHHHHHHHHHH
T ss_conf 7899999999999999999789----------853324201-----22--------------233450688899999999
Q ss_pred HHCCCCEEEEECHHHCCH-----------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 827998899803878598-----------899999999971952301003078984701567522746588788988764
Q gi|254781026|r 78 SLAHNGVLFLDEIPEFSP-----------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 78 ~lAh~GVLflDE~~e~~~-----------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
......|||+||++.+-+ .+.+.|+.-|+.-.. -..++++|+|+|- |
T Consensus 54 ~~~~p~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----------~~~~v~~I~tTN~-~----------- 111 (131)
T pfam00004 54 KKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTS----------SLSKVIVIAATNR-P----------- 111 (131)
T ss_pred HHCCCCEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC----------CCCCEEEEEECCC-H-----------
T ss_conf 97499189831167775167888887513268789999850224----------6887699997599-0-----------
Q ss_pred CCCHHHHHHHHHHCCHHHH-HCCCEEEECC
Q ss_conf 3899999999851224321-0042599838
Q gi|254781026|r 147 IRGPRCATEYQARISGPLM-DRIDIRIAVP 175 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~pll-dR~Dl~v~~~ 175 (186)
.++..+++ +|||.++.+|
T Consensus 112 -----------~~ld~al~r~Rfd~~i~~p 130 (131)
T pfam00004 112 -----------DKLDPALLRGRFDRIIEFP 130 (131)
T ss_pred -----------HHCCHHHHCCCCEEEEEEC
T ss_conf -----------4499779628332899806
No 63
>KOG1051 consensus
Probab=98.98 E-value=1e-09 Score=77.73 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=74.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|.||.|+|||-||+.+++.+= -+++-++.+. ...-.....++ .......+.-......++|.+-
T Consensus 596 flGpdgvGKt~lAkaLA~~~F-gse~~~IriD-----mse~~evskli----------gsp~gyvG~e~gg~Lteavrrr 659 (898)
T KOG1051 596 FLGPDGVGKTELAKALAEYVF-GSEENFIRLD-----MSEFQEVSKLI----------GSPPGYVGKEEGGQLTEAVKRR 659 (898)
T ss_pred EECCCCHHHHHHHHHHHHHHC-CCCCCEEEEC-----HHHHHHHHHCC----------CCCCCCCCCHHHHHHHHHHHCC
T ss_conf 978884138999999999972-8864268961-----45555565304----------8995554630577888997169
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 99889980387859889999999997195230100307898470156752274
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
.+-|.++||+.+.++.+++.|+|+|++|+++.+.+..+-.-+ .++|+|.|-
T Consensus 660 P~sVvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN--~I~IMTsn~ 710 (898)
T KOG1051 660 PYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKN--AIFIMTSNV 710 (898)
T ss_pred CCEEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCC--EEEEEECCC
T ss_conf 965999830222288899999999862740058886750464--599994263
No 64
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.95 E-value=2.1e-09 Score=76.00 Aligned_cols=128 Identities=23% Similarity=0.375 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCE--EECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH
Q ss_conf 9777860599999998874889897885323000--00027888756531112020377521001102343456827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMI--YSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i--~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~ 78 (186)
|+||||||||.++++++.-|-. ++ -|+.|..... .+-.+|. |. ....||-|.
T Consensus 354 lvGpPGvGKTSl~~sIA~al~r----------~f~rislGGv~Dea-eirGHrr--------TY-------vgampGrii 407 (784)
T PRK10787 354 LVGPPGVGKTSLGQSIAKATGR----------KYVRMALGGVRDEA-EIRGHRR--------TY-------IGSMPGKLI 407 (784)
T ss_pred EECCCCCCHHHHHHHHHHHHCC----------CEEEEECCCCCCHH-HHCCCCC--------CC-------CCCCCHHHH
T ss_conf 6469987724699999998589----------86998068878888-8256433--------43-------443683899
Q ss_pred H------CCCCEEEEECHHHCCH----HHHHHHHHHHHCCCEE---EHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 2------7998899803878598----8999999999719523---0100307898470156752274658878898876
Q gi|254781026|r 79 L------AHNGVLFLDEIPEFSP----QTLNALRQPLETGECI---IARANRKISYPSRIQLIAAMNPCRCGMSNKDENV 145 (186)
Q Consensus 79 l------Ah~GVLflDE~~e~~~----~~l~~L~~~le~g~v~---i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~ 145 (186)
. ..|=|.+|||++++.. +--.+|+++|.--++. ...-..-+.+ ++.++|+|+|--
T Consensus 408 ~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~Dl-S~v~Fi~TaN~~----------- 475 (784)
T PRK10787 408 QKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVATSNSM----------- 475 (784)
T ss_pred HHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCH-HHEEEEEECCCC-----------
T ss_conf 99997489885665003555224558998899998459765564000322046452-225899732767-----------
Q ss_pred CCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf 43899999999851224321004259983885668
Q gi|254781026|r 146 CIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 146 c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
. +++|||||+.++ .++.-+..
T Consensus 476 ------------~-ip~pLlDRmE~i-~~~gYt~~ 496 (784)
T PRK10787 476 ------------N-IPAPLLDRMEVI-RLSGYTED 496 (784)
T ss_pred ------------C-CCHHHHHHEEEE-EECCCCHH
T ss_conf ------------7-876776312155-41167678
No 65
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=98.95 E-value=1.7e-09 Score=76.50 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=104.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC----CHHHHHHHH-CEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 97778605999999988748898----978853230-0000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL----SLEESLEVS-MIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l----~~~e~le~~-~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
|.||.|||||+||..+|.-+-.. .-+..+..+ =|.+.+|.... .-...=.|.-......+..-|.-.|=
T Consensus 26 l~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~------kv~DqfihnV~K~~d~~~~~W~D~rL 99 (265)
T TIGR02640 26 LRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRK------KVVDQFIHNVVKLEDIVRQNWVDNRL 99 (265)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEE------EEEECCEEEEECCCCCCCCCCCCCHH
T ss_conf 447888556899999997368968998658232654423154675222------23201211134251220026678357
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEH----HCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99827998899803878598899999999971952301----00307898470156752274658878898876438999
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIA----RANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPR 151 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~----R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~ 151 (186)
.++--+|=.|.-|||+.=+|.+-|.||-++|+|...+- ...+.--|| +|..|-|+||.+ |.|-.+ ++
T Consensus 100 t~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP-~FR~IfTSNp~E--YAGVh~-----~Q- 170 (265)
T TIGR02640 100 TLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRYVDVHP-EFRVIFTSNPVE--YAGVHE-----TQ- 170 (265)
T ss_pred HHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC-CCCEEECCCCCC--CCCCCC-----HH-
T ss_conf 899756972766475788620456567555523215888787787225788-702463148701--057677-----16-
Q ss_pred HHHHHHHHCCHHHHHCC-CEEEECCCCCHHHH
Q ss_conf 99999851224321004-25998388566888
Q gi|254781026|r 152 CATEYQARISGPLMDRI-DIRIAVPSRTHIRS 182 (186)
Q Consensus 152 ~~~~Y~~rls~plldR~-Dl~v~~~~~~~~~~ 182 (186)
-+||||. -|.|+.++....-+
T Consensus 171 ----------DALlDRL~ti~~D~~D~~~e~a 192 (265)
T TIGR02640 171 ----------DALLDRLVTISMDYPDEDTETA 192 (265)
T ss_pred ----------HHHHHHHCCCCCCCCCHHHHHH
T ss_conf ----------6776644004578544478999
No 66
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.9e-09 Score=73.78 Aligned_cols=81 Identities=30% Similarity=0.283 Sum_probs=61.8
Q ss_pred CCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHC-----C---EEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 34568279982799889980387859889999999997195230100-----3---078984701567522746588788
Q gi|254781026|r 69 GLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARA-----N---RKISYPSRIQLIAAMNPCRCGMSN 140 (186)
Q Consensus 69 ~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~-----g---~~~~~Pa~f~Lvaa~NPcpcG~~~ 140 (186)
-..++||.|.+||+|||||||++++....+..+|.+|++++-.+.-. + ..-.+|.+|.+|++.|++--
T Consensus 213 ~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l---- 288 (647)
T COG1067 213 HIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDL---- 288 (647)
T ss_pred CCCCCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHH----
T ss_conf 6423676110125847999756632839899999999824456657674024861578885565489940889999----
Q ss_pred CCCCCCCCCHHHHHHHHHHCCHHHHHCCCE
Q ss_conf 988764389999999985122432100425
Q gi|254781026|r 141 KDENVCIRGPRCATEYQARISGPLMDRIDI 170 (186)
Q Consensus 141 ~~~~~c~c~~~~~~~Y~~rls~plldR~Dl 170 (186)
..+..|+.||++.
T Consensus 289 -----------------~~l~~~~~~r~~g 301 (647)
T COG1067 289 -----------------EDLHEPDRSRIEG 301 (647)
T ss_pred -----------------HHHCCCCHHHHHH
T ss_conf -----------------7655347778840
No 67
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=98.91 E-value=1.9e-09 Score=76.27 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=77.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH-
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568279982-
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL- 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l- 79 (186)
|+||||||||-||+++|.-|-. ..++..-|-.....-+-++|. .-+ +..||-|.+
T Consensus 455 lvGPPGVGKTSlg~SIA~ALnR---------kFvR~SlGG~~DeAEIrGHRR-----------TYv----GAMPGriiQ~ 510 (941)
T TIGR00763 455 LVGPPGVGKTSLGKSIAKALNR---------KFVRFSLGGVRDEAEIRGHRR-----------TYV----GAMPGRIIQG 510 (941)
T ss_pred EECCCCCCHHHHHHHHHHHHCC---------EEEEEEECCCEEHHHCCCCCC-----------CCC----CCCHHHHHHH
T ss_conf 2072695422278999999688---------049995267220311278643-----------203----4672578999
Q ss_pred -----CCCCEEEEECHHHCC--HHHH----HHHHHHHHCCCE---EEHHCCEEEEECCCEE--EEEECCCCCCCCCCCCC
Q ss_conf -----799889980387859--8899----999999971952---3010030789847015--67522746588788988
Q gi|254781026|r 80 -----AHNGVLFLDEIPEFS--PQTL----NALRQPLETGEC---IIARANRKISYPSRIQ--LIAAMNPCRCGMSNKDE 143 (186)
Q Consensus 80 -----Ah~GVLflDE~~e~~--~~~l----~~L~~~le~g~v---~i~R~g~~~~~Pa~f~--Lvaa~NPcpcG~~~~~~ 143 (186)
..|=|..|||++++. .+.+ .+|||+|.=-++ +.......+.+ ++.+ +|+|+|--
T Consensus 511 lk~~~t~NPl~LlDEIDK~~~~~~~~GDPaSALLEvLDPEQN~~F~DHYldvp~DL-S~V~CyFi~TAN~~--------- 580 (941)
T TIGR00763 511 LKKAKTKNPLILLDEIDKIGLKSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVLCYFIATANSI--------- 580 (941)
T ss_pred HHHCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCCH-HHHHHHEEECCCCC---------
T ss_conf 87604158806862022001678865563788864128643604255300234004-20021000244757---------
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHCCCEE
Q ss_conf 7643899999999851224321004259
Q gi|254781026|r 144 NVCIRGPRCATEYQARISGPLMDRIDIR 171 (186)
Q Consensus 144 ~~c~c~~~~~~~Y~~rls~plldR~Dl~ 171 (186)
..|+.|||||.=++
T Consensus 581 --------------d~IP~PLLDRMEvI 594 (941)
T TIGR00763 581 --------------DTIPRPLLDRMEVI 594 (941)
T ss_pred --------------CCCCCCCCCCEEEE
T ss_conf --------------67772213740245
No 68
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.88 E-value=6.1e-09 Score=73.23 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHH--HH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568279--98
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGE--DS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~--i~ 78 (186)
|+||||||||++||++++-.- . ||.....+.......|.+-.-.--. ++
T Consensus 264 L~GpPG~GKtl~AKAvA~e~~-----------------------~------p~l~l~~~~l~~~~vGesE~~~r~~f~~A 314 (491)
T CHL00195 264 LVGIQGTGKSLTAKAIANEWN-----------------------L------PLLRLDVGKLFGGIVGESESRMRQMIQLA 314 (491)
T ss_pred EECCCCCCHHHHHHHHHHHHC-----------------------C------CEEEEEHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 979999878999999986638-----------------------9------46996679975600670499999999999
Q ss_pred HC-CCCEEEEECHHHC------------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 27-9988998038785------------9889999999997195230100307898470156752274658878898876
Q gi|254781026|r 79 LA-HNGVLFLDEIPEF------------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENV 145 (186)
Q Consensus 79 lA-h~GVLflDE~~e~------------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~ 145 (186)
.+ --.|+||||++.. +..++..++.-|.+.. +...+|||+|--.
T Consensus 315 ~~~aP~ilfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~-------------~~VfViattN~~~---------- 371 (491)
T CHL00195 315 ETISPCILWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEKK-------------SPVFVVATANNID---------- 371 (491)
T ss_pred HHHCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC-------------CCEEEEEECCCCC----------
T ss_conf 86198589974654542588888887232899999999864689-------------9769999589975----------
Q ss_pred CCCCHHHHHHHHHHCCHHHHH--CCCEEEECCCC
Q ss_conf 438999999998512243210--04259983885
Q gi|254781026|r 146 CIRGPRCATEYQARISGPLMD--RIDIRIAVPSR 177 (186)
Q Consensus 146 c~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~ 177 (186)
.|...|+= |||-++.|+-.
T Consensus 372 -------------~L~pellR~GRFD~~~~v~lP 392 (491)
T CHL00195 372 -------------SLPLELLRKGRFDEIFFLDLP 392 (491)
T ss_pred -------------CCCHHHCCCCCCCEEEECCCC
T ss_conf -------------589877089877704764895
No 69
>KOG2028 consensus
Probab=98.88 E-value=1.4e-09 Score=76.91 Aligned_cols=84 Identities=29% Similarity=0.381 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC--CCCCCCCHHHHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102--343456827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI--GGGLQVLPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~--gg~~~~~pG~i~ 78 (186)
|-||||||||+|||.++.-- +-+| -.|. -.+++.+... .+...--.-+.+
T Consensus 167 lWGppG~GKTtlArlia~ts------------k~~S--------------yrfv--elSAt~a~t~dvR~ife~aq~~~~ 218 (554)
T KOG2028 167 LWGPPGTGKTTLARLIASTS------------KKHS--------------YRFV--ELSATNAKTNDVRDIFEQAQNEKS 218 (554)
T ss_pred EECCCCCCHHHHHHHHHHHC------------CCCC--------------EEEE--EEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 86699876588999998605------------7774--------------2799--974145661889999999887876
Q ss_pred H-CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf 2-799889980387859889999999997195230
Q gi|254781026|r 79 L-AHNGVLFLDEIPEFSPQTLNALRQPLETGECII 112 (186)
Q Consensus 79 l-Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i 112 (186)
+ .-+-||||||+..|++.-+|.++-..|.|.|++
T Consensus 219 l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~l 253 (554)
T KOG2028 219 LTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITL 253 (554)
T ss_pred HHCCEEEEEEHHHHHHHHHHHHCCCCEECCCCEEE
T ss_conf 52440698737765532321100342130670699
No 70
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=98.88 E-value=4e-09 Score=74.29 Aligned_cols=117 Identities=29% Similarity=0.413 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||||||.|||++|+=-- + -..|++|.--... |+.++.| -.+.|+-....-=|
T Consensus 97 LvGPPGTGKTLLAKAvAGEA~---------V-PFF~iSGSdFVEM-------FVGVGAS-RVRDLFeqAK~nAP------ 152 (505)
T TIGR01241 97 LVGPPGTGKTLLAKAVAGEAG---------V-PFFSISGSDFVEM-------FVGVGAS-RVRDLFEQAKKNAP------ 152 (505)
T ss_pred EECCCCCCHHHHHHHHHCCCC---------C-CCEEECCCCEEEC-------CCCCCCE-EHHHHHHHHHHHCC------
T ss_conf 317878424678875202588---------9-6247407610111-------2056400-01445799997189------
Q ss_pred CCCEEEEECHHHC---------------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9988998038785---------------9889999999997195230100307898470156752274658878898876
Q gi|254781026|r 81 HNGVLFLDEIPEF---------------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENV 145 (186)
Q Consensus 81 h~GVLflDE~~e~---------------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~ 145 (186)
+|.|||||+=- +-+.||+||-=|.--.- ....+++||||= | | -
T Consensus 153 --CIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~-----------~~gvIv~AATNR-P-----D-v-- 210 (505)
T TIGR01241 153 --CIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGT-----------NTGVIVIAATNR-P-----D-V-- 210 (505)
T ss_pred --CEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCC-----------CCCEEEEEECCC-C-----C-C--
T ss_conf --7056401000033356436676541355433233133178589-----------885799850488-4-----1-1--
Q ss_pred CCCCHHHHHHHHHHCCHHHH--HCCCEEEECCCC
Q ss_conf 43899999999851224321--004259983885
Q gi|254781026|r 146 CIRGPRCATEYQARISGPLM--DRIDIRIAVPSR 177 (186)
Q Consensus 146 c~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~ 177 (186)
|-.+|| =|||=+|.|+.+
T Consensus 211 --------------LD~ALLRPGRFDRQv~V~~P 230 (505)
T TIGR01241 211 --------------LDPALLRPGRFDRQVVVDLP 230 (505)
T ss_pred --------------CCCCCCCCCCCCCEEECCCC
T ss_conf --------------65100687874451345888
No 71
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.87 E-value=2.8e-09 Score=75.19 Aligned_cols=116 Identities=26% Similarity=0.359 Sum_probs=60.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC-HHHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568-279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL-PGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~-pG~i~l 79 (186)
|.||||||||++||+++.=+- .+.+ ++.+ .......++.+...++ -=..++
T Consensus 171 LyGPPGtGKTllAkAvA~e~~---------~~fi-~v~~------------------s~l~sk~vGesek~vr~lF~~Ar 222 (390)
T PRK03992 171 LYGPPGTGKTLLAKAVAHETN---------ATFI-RVVG------------------SELVQKFIGEGARLVRELFELAR 222 (390)
T ss_pred EECCCCCCHHHHHHHHHHHHC---------CCEE-EEEH------------------HHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 689899978999999998748---------8879-9667------------------99752454179999999999999
Q ss_pred C-CCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 7-998899803878598--------------8999999999719523010030789847015675227465887889887
Q gi|254781026|r 80 A-HNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN 144 (186)
Q Consensus 80 A-h~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~ 144 (186)
. .-.|+||||++-+-. .++..|+.-|+ |.- . ..+..+|||+|-..
T Consensus 223 ~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emD-G~~--~--------~~~V~VIaATNrpd--------- 282 (390)
T PRK03992 223 EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD-GFD--P--------RGNVKIIAATNRPD--------- 282 (390)
T ss_pred HHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC-CCC--C--------CCCEEEEEECCCCH---------
T ss_conf 709908971432566335677888620889999999999744-877--7--------78827996069810---------
Q ss_pred CCCCCHHHHHHHHHHCCHHHHH--CCCEEEECCCCC
Q ss_conf 6438999999998512243210--042599838856
Q gi|254781026|r 145 VCIRGPRCATEYQARISGPLMD--RIDIRIAVPSRT 178 (186)
Q Consensus 145 ~c~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~~ 178 (186)
.|..+|+- |||..+.+|...
T Consensus 283 --------------~LDpAllRpGRFDr~I~iplPd 304 (390)
T PRK03992 283 --------------ILDPALLRPGRFDRIIEVPLPD 304 (390)
T ss_pred --------------HCCHHHHCCCCCCEEEEECCCC
T ss_conf --------------0597775477652388708949
No 72
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.87 E-value=6.7e-10 Score=78.87 Aligned_cols=113 Identities=26% Similarity=0.310 Sum_probs=76.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC------HHHCCCCCCCCCH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210------0110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT------IAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~------~~~l~gg~~~~~p 74 (186)
|.||.|.|||.|||++-.+-- +-|..+|. ...++....|. .++. .++.+.|...-+.
T Consensus 213 l~gptgagksflarriyelk~-----------arhq~sg~----fvevncatlrg--d~amsalfghvkgaftga~~~r~ 275 (531)
T COG4650 213 LNGPTGAGKSFLARRIYELKQ-----------ARHQFSGA----FVEVNCATLRG--DTAMSALFGHVKGAFTGARESRE 275 (531)
T ss_pred EECCCCCCHHHHHHHHHHHHH-----------HHHHCCCC----EEEEEEEEECC--CHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 646887436689999999998-----------88753786----27886300047--52889987640013146334554
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECC
Q ss_conf 7998279988998038785988999999999719523010030789847015675227
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~N 132 (186)
|.+.-|++|.||+||++|+..+.+.+|+.+.|+++..- -|..-...++|+||+.+-
T Consensus 276 gllrsadggmlfldeigelgadeqamllkaieekrf~p--fgsdr~v~sdfqliagtv 331 (531)
T COG4650 276 GLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYP--FGSDRQVSSDFQLIAGTV 331 (531)
T ss_pred HHHCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHH
T ss_conf 42433778657567433247527889999988712677--887400031067764118
No 73
>CHL00176 ftsH cell division protein; Validated
Probab=98.86 E-value=7e-09 Score=72.86 Aligned_cols=117 Identities=27% Similarity=0.385 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||||||+|||++++=-- .-..|++|..-.. -|+..+ ..-...++--.. ..
T Consensus 215 L~GpPGTGKTlLAkAvAgEa~----------vpF~~~sgs~F~e-------~~vGvg-a~rVR~LF~~Ar--------~~ 268 (631)
T CHL00176 215 LVGPPGTGKTLLAKAIAGEAE----------VPFFSISGSEFVE-------MFVGVG-AARVRDLFKKAK--------EN 268 (631)
T ss_pred EECCCCCCHHHHHHHHHCCCC----------CCEEEEEHHHHHH-------HHCCHH-HHHHHHHHHHHH--------HC
T ss_conf 889899878899999856558----------8469988378556-------421555-899999999998--------63
Q ss_pred CCCEEEEECHHHCC--------------HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99889980387859--------------8899999999971952301003078984701567522746588788988764
Q gi|254781026|r 81 HNGVLFLDEIPEFS--------------PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 81 h~GVLflDE~~e~~--------------~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
---|.|||||+-+- ...+++||.-|.--.- ....+++||+|-. +
T Consensus 269 aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~-----------~~gViViaATNrp------d----- 326 (631)
T CHL00176 269 SPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEG-----------NKGVIVIAATNRI------D----- 326 (631)
T ss_pred CCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC-----------CCCEEEEEECCCC------C-----
T ss_conf 99699987101201147898889850899999999998428887-----------8886999825885------5-----
Q ss_pred CCCHHHHHHHHHHCCHHHHH--CCCEEEECCCC
Q ss_conf 38999999998512243210--04259983885
Q gi|254781026|r 147 IRGPRCATEYQARISGPLMD--RIDIRIAVPSR 177 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~ 177 (186)
.|-.+||= |||-+|.|+..
T Consensus 327 ------------~LDpALlRPGRFDR~I~V~lP 347 (631)
T CHL00176 327 ------------ILDAALLRPGRFDRQVTVSLP 347 (631)
T ss_pred ------------CCCHHHCCCCCCCEEEEECCC
T ss_conf ------------456866268877549982698
No 74
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=98.84 E-value=1.9e-09 Score=76.24 Aligned_cols=110 Identities=27% Similarity=0.364 Sum_probs=81.2
Q ss_pred CCCCCCHHHHHHHHHHH-HCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHH-------------HCCC
Q ss_conf 77786059999999887-488989788532300000027888756531112020377521001-------------1023
Q gi|254781026|r 2 IGPPGARKSMLASCLPS-ILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIA-------------ALIG 67 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~-iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~-------------~l~g 67 (186)
.|..||||=|.|+.|+. -. .......+ -...||++.-=.+... ++.|
T Consensus 348 ~GE~GTGKElvAq~~H~EY~-----------~R~~~~~~--------r~~~pFVAiNCGAi~EsLLEaELFGYeeGAFTG 408 (658)
T TIGR02329 348 EGESGTGKELVAQAIHREYA-----------LRYDQLSG--------RRDRPFVAINCGAIAESLLEAELFGYEEGAFTG 408 (658)
T ss_pred ECCCCCCHHHHHHHHHHHHH-----------HHHHHHCC--------CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 14777228999999759998-----------74666501--------337884687474656888877642676665016
Q ss_pred CCCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECC
Q ss_conf 43456827998279988998038785988999999999719523010030789847015675227
Q gi|254781026|r 68 GGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 (186)
Q Consensus 68 g~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~N 132 (186)
.-..-+.|.+--||+|.||||||+||+=..+.=|+-+||++. |.|-|...=.|-|..+|+|+.
T Consensus 409 aRrGG~~GL~E~Ah~GTLFLDEIGEmPLPLQtRLLRVLeEre--V~RvG~~~P~~VDvRvvaAth 471 (658)
T TIGR02329 409 ARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEERE--VVRVGGTEPVPVDVRVVAATH 471 (658)
T ss_pred CCCCCCCCHHHHHCCCCEEEHHHCCCCCHHHHHHHHHHHCCC--EEECCCCCCCEEEEEEEECCC
T ss_conf 776776122220057951001003578614677777651221--476178754024443433122
No 75
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.2e-08 Score=71.49 Aligned_cols=131 Identities=24% Similarity=0.364 Sum_probs=74.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH-
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568279982-
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL- 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l- 79 (186)
|+||||||||-|++.+|.-|-. ..++..-|-.+....+-.+|. .-+ ...||-|..
T Consensus 355 LVGPPGVGKTSLgkSIA~al~R---------kfvR~sLGGvrDEAEIRGHRR-----------TYI----GaMPGrIiQ~ 410 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKALGR---------KFVRISLGGVRDEAEIRGHRR-----------TYI----GAMPGKIIQG 410 (782)
T ss_pred EECCCCCCCHHHHHHHHHHHCC---------CEEEEECCCCCCHHHHCCCCC-----------CCC----CCCCHHHHHH
T ss_conf 9789988701189999999589---------779995476542777535531-----------233----5687289999
Q ss_pred -----CCCCEEEEECHHHCCHHH----HHHHHHHHHCCCEEE---HHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf -----799889980387859889----999999997195230---10030789847015675227465887889887643
Q gi|254781026|r 80 -----AHNGVLFLDEIPEFSPQT----LNALRQPLETGECII---ARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI 147 (186)
Q Consensus 80 -----Ah~GVLflDE~~e~~~~~----l~~L~~~le~g~v~i---~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~ 147 (186)
..|=|..|||++++..+- -.+|+|+|.--++.- ..-...+.+ ++.++|+|+|--
T Consensus 411 mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~VmFiaTANsl------------- 476 (782)
T COG0466 411 MKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SKVMFIATANSL------------- 476 (782)
T ss_pred HHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCH-HHEEEEEECCCC-------------
T ss_conf 998677687478640333167777886888886269765676122201676644-325888603751-------------
Q ss_pred CCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf 899999999851224321004259983885668
Q gi|254781026|r 148 RGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 148 c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
+.|++|||||..++ .++.-++.
T Consensus 477 ----------~tIP~PLlDRMEiI-~lsgYt~~ 498 (782)
T COG0466 477 ----------DTIPAPLLDRMEVI-RLSGYTED 498 (782)
T ss_pred ----------CCCCHHHHCCEEEE-EECCCCHH
T ss_conf ----------32986784303056-42688869
No 76
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.77 E-value=2.9e-08 Score=69.24 Aligned_cols=117 Identities=27% Similarity=0.374 Sum_probs=64.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||||||+|||++++=-- .-+.|++|..-.. -|+..+. .....++.-. ...
T Consensus 190 L~GPPGtGKTlLAkAvAgEa~----------vpF~~~sgsef~e-------~~vGvga-~rVR~lF~~A--------r~~ 243 (644)
T PRK10733 190 MVGPPGTGKTLLAKAIAGEAK----------VPFFTISGSDFVE-------MFVGVGA-SRVRDMFEQA--------KKA 243 (644)
T ss_pred EECCCCCCHHHHHHHHHCCCC----------CEEEEEEHHHHHH-------EEEECCH-HHHHHHHHHH--------HHC
T ss_conf 779899877899999864559----------8089978477302-------2253068-9999999999--------966
Q ss_pred CCCEEEEECHHHCC--------------HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99889980387859--------------8899999999971952301003078984701567522746588788988764
Q gi|254781026|r 81 HNGVLFLDEIPEFS--------------PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 81 h~GVLflDE~~e~~--------------~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
---|.|||||+-+- ...+++|+.-|.--.- ....+++||+|-. +
T Consensus 244 aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~-----------~~~ViviaATNrp------d----- 301 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-----------NEGIIVIAATNRP------D----- 301 (644)
T ss_pred CCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-----------CCCEEEEEECCCC------C-----
T ss_conf 99799995322036667898889832888789999999548888-----------7876999626997------5-----
Q ss_pred CCCHHHHHHHHHHCCHHHHH--CCCEEEECCCC
Q ss_conf 38999999998512243210--04259983885
Q gi|254781026|r 147 IRGPRCATEYQARISGPLMD--RIDIRIAVPSR 177 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~ 177 (186)
-|-.+||- |||-+|.|+..
T Consensus 302 ------------~LD~ALlRPGRFDr~I~V~lP 322 (644)
T PRK10733 302 ------------VLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred ------------CCCHHHHCCCCCCEEEEECCC
T ss_conf ------------547777168886559997798
No 77
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.76 E-value=8.2e-09 Score=72.48 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=82.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC--------CC
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434--------56
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL--------QV 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~--------~~ 72 (186)
|+||.|+|||.|||.|+.+|--. ..-.-|+. -|+++..|.-. ..
T Consensus 114 liGPTG~GKTlla~tLAk~l~vP---------F~iaDAT~-------------------lTEaGYVGeDVE~ii~~Llq~ 165 (411)
T PRK05342 114 LIGPTGSGKTLLAQTLARILNVP---------FAIADATT-------------------LTEAGYVGEDVENILLKLLQA 165 (411)
T ss_pred EECCCCCCHHHHHHHHHHHHCCC---------EEEEEECE-------------------ECCCCCCCCCHHHHHHHHHHH
T ss_conf 98999977889999999986999---------89986120-------------------012674560799999999998
Q ss_pred CHHHHHHCCCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEHHCCEE-------EEEC-CCEEEE--
Q ss_conf 82799827998899803878598--------------89999999997195230100307-------8984-701567--
Q gi|254781026|r 73 LPGEDSLAHNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIARANRK-------ISYP-SRIQLI-- 128 (186)
Q Consensus 73 ~pG~i~lAh~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~R~g~~-------~~~P-a~f~Lv-- 128 (186)
--+.+.+|-+||.||||+++..+ .|+.+||.-||.-.+.+...|.. +... .+.++|
T Consensus 166 Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~g 245 (411)
T PRK05342 166 ADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICG 245 (411)
T ss_pred CCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEEC
T ss_conf 28889988368288850234542478888877765124899999987587141188877778776516761471799911
Q ss_pred EEC-----------CCCCCCCCCCCCCCCCCCHHHHHHHHHH----------CCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 522-----------7465887889887643899999999851----------224321004259983885668885
Q gi|254781026|r 129 AAM-----------NPCRCGMSNKDENVCIRGPRCATEYQAR----------ISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 129 aa~-----------NPcpcG~~~~~~~~c~c~~~~~~~Y~~r----------ls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
+|. |-.--||-.+....-. ......++. +-.=|.-||-+++.+.+++..+++
T Consensus 246 GAF~GL~~II~~R~~~~~iGF~~~~~~~~~---~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv~L~~L~~~~L~ 318 (411)
T PRK05342 246 GAFDGLEKIIKQRLGKSGIGFGAEVKSKDE---KDLGELLAQVEPEDLVKFGLIPEFIGRLPVVATLEELDEEALV 318 (411)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEECCCCCHHHHH
T ss_conf 553358999986357887677887664110---0056787627987888738837761466405462447999999
No 78
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=98.74 E-value=1.1e-08 Score=71.64 Aligned_cols=136 Identities=24% Similarity=0.319 Sum_probs=98.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHH-----CC-------CCC
Q ss_conf 777860599999998874889897885323000000278887565311120203775210011-----02-------343
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAA-----LI-------GGG 69 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~-----l~-------gg~ 69 (186)
-|.-||||=..|++|+.--|. ...||.+.-..+.++. |+ .|.
T Consensus 164 ~GESGTGKELVA~ALH~~s~R--------------------------~~~PFiAlNmAAIP~~L~ESELFGHEkGAFTGA 217 (471)
T TIGR01818 164 NGESGTGKELVARALHRHSPR--------------------------ARGPFIALNMAAIPKDLIESELFGHEKGAFTGA 217 (471)
T ss_pred ECCCCCCHHHHHHHHHCCCCC--------------------------CCCCCEEECHHHCCHHHHHHHHCCCCCCCCCCC
T ss_conf 557577589999984013755--------------------------577732730232224665543214565300010
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 45682799827998899803878598899999999971952301003078984701567522746588788988764389
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRG 149 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~ 149 (186)
...+.|-.-+|+||.||||||+-|+-.++.=|+-+|.+|.. .|.|+..-..+|..+|||+|- ++
T Consensus 218 ~~~~~GRFEQA~GGTLFLDEIGDMPl~~QTRLLRVL~~G~f--~rVGG~~p~k~DVRi~AAThq----~L---------- 281 (471)
T TIGR01818 218 NTRRQGRFEQADGGTLFLDEIGDMPLDLQTRLLRVLADGEF--YRVGGRTPIKVDVRIVAATHQ----DL---------- 281 (471)
T ss_pred CCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCE--EEECCCEEEEEEEEEEECCCH----HH----------
T ss_conf 25567772534888210102167877687779886407865--772682024550466733665----68----------
Q ss_pred HHHHHHHHHHCCHHHHHCCC-EEEECCCCCHHH
Q ss_conf 99999998512243210042-599838856688
Q gi|254781026|r 150 PRCATEYQARISGPLMDRID-IRIAVPSRTHIR 181 (186)
Q Consensus 150 ~~~~~~Y~~rls~plldR~D-l~v~~~~~~~~~ 181 (186)
...+ -+.++=.=|.=|.+ |+|.+|++-+-+
T Consensus 282 e~lv--~~G~FReDLfhRL~Vi~i~lPpLrER~ 312 (471)
T TIGR01818 282 EALV--RQGKFREDLFHRLNVIRIHLPPLRERR 312 (471)
T ss_pred HHHH--HCCCCHHHHHHHHCEEEECCCCCCCHH
T ss_conf 9996--558813555551233462168721226
No 79
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.71 E-value=2.4e-08 Score=69.76 Aligned_cols=125 Identities=26% Similarity=0.360 Sum_probs=78.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCC---CCCCCC-HHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023---434568-279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIG---GGLQVL-PGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~g---g~~~~~-pG~ 76 (186)
+.|.||+|||+.|-+++.||-.+ |-...+..+ +.+.+.+.| |-..++ ...
T Consensus 63 ftG~PGtGkttva~~m~~~l~~l---------------Gy~r~G~~~-----------~~trddlvGqy~GhtaPktke~ 116 (284)
T TIGR02880 63 FTGNPGTGKTTVALRMAQILHRL---------------GYVRKGHLV-----------SVTRDDLVGQYIGHTAPKTKEV 116 (284)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHC---------------CCCCCCCEE-----------EEEHHHHHHHHHCCCCCHHHHH
T ss_conf 51689872489999999999871---------------540036267-----------8530013112212577226899
Q ss_pred HHHCCCCEEEEECHH---------HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 982799889980387---------85988999999999719523010030789847015675227465887889887643
Q gi|254781026|r 77 DSLAHNGVLFLDEIP---------EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI 147 (186)
Q Consensus 77 i~lAh~GVLflDE~~---------e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~ 147 (186)
+-+|.+||||+||.- .+....++.|+|.||..+-.+ .+|-| ||..--
T Consensus 117 lk~a~GGvlfideayyly~P~nerdyG~eaieillq~men~r~~l-------------vvi~a------Gy~~rm----- 172 (284)
T TIGR02880 117 LKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL-------------VVILA------GYKDRM----- 172 (284)
T ss_pred HHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCE-------------EEEEE------CCHHHH-----
T ss_conf 987428736642203321776410223799999999872365537-------------88871------707888-----
Q ss_pred CCHHHHHHHHHHCCHH-HHHCCCEEEECCCCCHHHHH
Q ss_conf 8999999998512243-21004259983885668885
Q gi|254781026|r 148 RGPRCATEYQARISGP-LMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 148 c~~~~~~~Y~~rls~p-lldR~Dl~v~~~~~~~~~~~ 183 (186)
..+. -|-| +-+|+--+|+.|+-+..+.+
T Consensus 173 ------~~f~--~snPG~~sr~a~h~~fPdy~~~~l~ 201 (284)
T TIGR02880 173 ------DSFF--ESNPGLSSRVAHHVDFPDYSEEELL 201 (284)
T ss_pred ------HHHH--HCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf ------8875--1178624677643158887767899
No 80
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.70 E-value=6.9e-09 Score=72.91 Aligned_cols=107 Identities=23% Similarity=0.282 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC--------CCCC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234--------3456
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGG--------GLQV 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg--------~~~~ 72 (186)
+-|-||+||--+||.+..=-. . +| .++ .-......-+..+..++|. -..-
T Consensus 341 l~GEtGtGKe~laraiH~~s~-~--------------~g------pfv-AvNCaAip~~liesELFGy~~GafTga~~kG 398 (606)
T COG3284 341 LQGETGTGKEVLARAIHQNSE-A--------------AG------PFV-AVNCAAIPEALIESELFGYVAGAFTGARRKG 398 (606)
T ss_pred ECCCCCHHHHHHHHHHHHCCC-C--------------CC------CEE-EEEECCCHHHHHHHHHHCCCCCCCCCCHHCC
T ss_conf 538765568999999985365-5--------------69------837-9985034477646777445765643300106
Q ss_pred CHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECC
Q ss_conf 827998279988998038785988999999999719523010030789847015675227
Q gi|254781026|r 73 LPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 (186)
Q Consensus 73 ~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~N 132 (186)
.-|.+.+||+|.||+|||.+++-..+..|+.++++|+|+ .-|... -+-++.+|+|++
T Consensus 399 ~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~--p~g~~~-~~vdirvi~ath 455 (606)
T COG3284 399 YKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVT--PLGGTR-IKVDIRVIAATH 455 (606)
T ss_pred CCCCCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHCCEE--CCCCCC-EEEEEEEEECCC
T ss_conf 655410157876089876114189999999998618252--358852-157799983467
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.69 E-value=1.4e-08 Score=71.19 Aligned_cols=137 Identities=27% Similarity=0.228 Sum_probs=77.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
++||||+|||++++.++..+.... ..+..++............. ............+...++ .....|
T Consensus 7 l~G~~GsGKTtl~~~la~~~~~~~-------~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~ 74 (148)
T smart00382 7 IVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLL----LIIVGGKKASGSGELRLR-LALALA 74 (148)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCC-------CCEEEEEHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHH-HHHHHH
T ss_conf 999997029999999998726689-------96899875998988898765----300011221051999999-999999
Q ss_pred CC---CEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99---889980387859889999999997195230100307898470156752274658878898876438999999998
Q gi|254781026|r 81 HN---GVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ 157 (186)
Q Consensus 81 h~---GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~ 157 (186)
.. .|+++||+..+.......+...... .+..........+.+|+++|+ ...
T Consensus 75 ~~~~~~viiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~vi~~~n~-----~~~---------------- 128 (148)
T smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND-----EKD---------------- 128 (148)
T ss_pred HHCCCCEEEEECCHHHCCCCCHHHHHHHHH-----HHHHCCCCCCCCEEEEEEECC-----CCC----------------
T ss_conf 844998999827502147620799999999-----998517657899899995699-----522----------------
Q ss_pred HHCCHHHHHCCCEEEECCC
Q ss_conf 5122432100425998388
Q gi|254781026|r 158 ARISGPLMDRIDIRIAVPS 176 (186)
Q Consensus 158 ~rls~plldR~Dl~v~~~~ 176 (186)
..+..+..|+|.++.+..
T Consensus 129 -~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 129 -LGPALLRRRFDRRIVLLL 146 (148)
T ss_pred -CCHHHHCCCCCEEEEEEC
T ss_conf -498770744787999828
No 82
>KOG0730 consensus
Probab=98.67 E-value=5.2e-08 Score=67.75 Aligned_cols=115 Identities=25% Similarity=0.388 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC---HHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568---2799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL---PGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~---pG~i 77 (186)
|.||||||||++||+++.-- .++ +-|+.|. .+. ....+.++..++ --+=
T Consensus 473 lyGPPGC~KT~lAkalAne~-~~n---------Flsvkgp-----EL~-------------sk~vGeSEr~ir~iF~kAR 524 (693)
T KOG0730 473 LYGPPGCGKTLLAKALANEA-GMN---------FLSVKGP-----ELF-------------SKYVGESERAIREVFRKAR 524 (693)
T ss_pred EECCCCCCHHHHHHHHHHHH-CCC---------EEECCCH-----HHH-------------HHHCCCHHHHHHHHHHHHH
T ss_conf 77899862478999986463-587---------2641578-----998-------------7751825899999999986
Q ss_pred HHCCCCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 8279988998038785-----------98899999999971952301003078984701567522746588788988764
Q gi|254781026|r 78 SLAHNGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 78 ~lAh~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
..|. -|+|+||++-+ .+.++++|+.=|.-.... -+..+|||+|-. +
T Consensus 525 ~~aP-~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~-----------k~V~ViAATNRp------d----- 581 (693)
T KOG0730 525 QVAP-CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL-----------KNVLVIAATNRP------D----- 581 (693)
T ss_pred HCCC-EEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC-----------CCEEEEECCCCH------H-----
T ss_conf 2698-3774466666663047875514899999999870041014-----------708999505881------0-----
Q ss_pred CCCHHHHHHHHHHCCHHHHH--CCCEEEECCCCC
Q ss_conf 38999999998512243210--042599838856
Q gi|254781026|r 147 IRGPRCATEYQARISGPLMD--RIDIRIAVPSRT 178 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~~ 178 (186)
.|..+||. |||-.+.||...
T Consensus 582 ------------~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730 582 ------------MIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred ------------HCCHHHCCCCCCCEEEEECCCC
T ss_conf ------------1269775986533057515834
No 83
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.65 E-value=4.1e-08 Score=68.39 Aligned_cols=102 Identities=26% Similarity=0.434 Sum_probs=66.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-C-------C
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434-5-------6
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-Q-------V 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-~-------~ 72 (186)
||||+|+|||.||+-||.+|-= .+ .+| + .++-|+++-+|--. . .
T Consensus 157 LiGPTGSGKTLLAqTLA~~L~V-Pf----------AiA-----D------------ATtLTEAGYVGEDVENIL~~Llq~ 208 (452)
T TIGR00382 157 LIGPTGSGKTLLAQTLARILNV-PF----------AIA-----D------------ATTLTEAGYVGEDVENILLKLLQA 208 (452)
T ss_pred EECCCCCCHHHHHHHHHHHCCC-CE----------EEC-----C------------HHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 5468885268999999987388-74----------211-----1------------110200664242288999999874
Q ss_pred CHHHHHHCCCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEH-HCCEEEEEC-CCEEEEEECC
Q ss_conf 82799827998899803878598--------------899999999971952301-003078984-7015675227
Q gi|254781026|r 73 LPGEDSLAHNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIA-RANRKISYP-SRIQLIAAMN 132 (186)
Q Consensus 73 ~pG~i~lAh~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~-R~g~~~~~P-a~f~Lvaa~N 132 (186)
=-+.+.+|.+||.|||||++.++ .|+++||--+|--...|- ++|+. || -+|+=|=|+|
T Consensus 209 ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRK--HP~~~~iqiDTs~ 282 (452)
T TIGR00382 209 ADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK--HPQQEFIQIDTSN 282 (452)
T ss_pred CCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCC--CCCCCEEEECCCC
T ss_conf 1455245278508984223101215778011221755499999987603234317544886--8865768864764
No 84
>KOG0734 consensus
Probab=98.64 E-value=9.4e-08 Score=66.25 Aligned_cols=114 Identities=27% Similarity=0.385 Sum_probs=63.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCC---CHHHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456---82799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQV---LPGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~---~pG~i 77 (186)
|+||||||||+|||++++=-- + -+.+.+|.. . .+..++-|.+.+ -.-+=
T Consensus 342 LvGPPGTGKTlLARAvAGEA~---------V-PFF~~sGSE-F-----------------dEm~VGvGArRVRdLF~aAk 393 (752)
T KOG0734 342 LVGPPGTGKTLLARAVAGEAG---------V-PFFYASGSE-F-----------------DEMFVGVGARRVRDLFAAAK 393 (752)
T ss_pred EECCCCCCHHHHHHHHHCCCC---------C-CEEECCCCC-H-----------------HHHHHCCCHHHHHHHHHHHH
T ss_conf 768999755699998605568---------9-747416620-4-----------------45422014899999999987
Q ss_pred HHCCCCEEEEECHHH-----------CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 827998899803878-----------598899999999971952301003078984701567522746588788988764
Q gi|254781026|r 78 SLAHNGVLFLDEIPE-----------FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 78 ~lAh~GVLflDE~~e-----------~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
.+| -.|.||||++- +.+..+++|+--|.-.. -+.-.++|||+|-.. +
T Consensus 394 ~~A-PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~-----------qNeGiIvigATNfpe-----~----- 451 (752)
T KOG0734 394 ARA-PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK-----------QNEGIIVIGATNFPE-----A----- 451 (752)
T ss_pred HCC-CEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC-----------CCCCEEEEECCCCHH-----H-----
T ss_conf 349-859997200220566786277899989999999842867-----------688669995168745-----5-----
Q ss_pred CCCHHHHHHHHHHCCHHHH--HCCCEEEECCCC
Q ss_conf 3899999999851224321--004259983885
Q gi|254781026|r 147 IRGPRCATEYQARISGPLM--DRIDIRIAVPSR 177 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~ 177 (186)
|-.+|+ -|||-+|.||..
T Consensus 452 -------------LD~AL~RPGRFD~~v~Vp~P 471 (752)
T KOG0734 452 -------------LDKALTRPGRFDRHVTVPLP 471 (752)
T ss_pred -------------HHHHHCCCCCCCEEEECCCC
T ss_conf -------------56873488755336746897
No 85
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.63 E-value=1.2e-07 Score=65.73 Aligned_cols=108 Identities=22% Similarity=0.213 Sum_probs=78.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC--CCCHHHHHH
Q ss_conf 777860599999998874889897885323000000278887565311120203775210011023434--568279982
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL--QVLPGEDSL 79 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~--~~~pG~i~l 79 (186)
.|..||||-++||+-+-.-|. +..+.-..-+ .+......+..++|-.. .-++|-.-+
T Consensus 233 ~GeTGTGKdLlAkaCH~~S~R----------------~~~pFlalNC-----A~lPe~~aEsElFG~apg~~gk~GffE~ 291 (511)
T COG3283 233 TGETGTGKDLLAKACHLASPR----------------HSKPFLALNC-----ASLPEDAAESELFGHAPGDEGKKGFFEQ 291 (511)
T ss_pred ECCCCCHHHHHHHHHHHCCCC----------------CCCCEEEEEC-----CCCCHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 448886188999987443845----------------5897367644-----7796667677773568887776346340
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECC
Q ss_conf 79988998038785988999999999719523010030789847015675227
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~N 132 (186)
||+|.+|+||++|+++..+..|+--+.||+ ..|.|..-++-++..+|+|+.
T Consensus 292 AngGTVlLDeIgEmSp~lQaKLLRFL~DGt--FRRVGee~Ev~vdVRVIcatq 342 (511)
T COG3283 292 ANGGTVLLDEIGEMSPRLQAKLLRFLNDGT--FRRVGEDHEVHVDVRVICATQ 342 (511)
T ss_pred CCCCEEEEEHHHHCCHHHHHHHHHHHCCCC--CCCCCCCCEEEEEEEEEECCC
T ss_conf 269748850033249989999999862776--000377545787789996166
No 86
>KOG0733 consensus
Probab=98.63 E-value=2.4e-07 Score=63.92 Aligned_cols=97 Identities=24% Similarity=0.303 Sum_probs=53.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCH---HHCCCCCCCCCHHHH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100---110234345682799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTI---AALIGGGLQVLPGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~---~~l~gg~~~~~pG~i 77 (186)
|-||||||||+||+++++=|- +. +.++++. .+.+--..-++ ..++... .
T Consensus 228 lHGPPGCGKT~lA~AiAgel~-vP---------f~~isAp-----------eivSGvSGESEkkiRelF~~A-------~ 279 (802)
T KOG0733 228 LHGPPGCGKTSLANAIAGELG-VP---------FLSISAP-----------EIVSGVSGESEKKIRELFDQA-------K 279 (802)
T ss_pred EECCCCCCHHHHHHHHHHHCC-CC---------EEEECCH-----------HHHCCCCCCCHHHHHHHHHHH-------H
T ss_conf 448998647899999752128-85---------4851414-----------653155752289999999987-------3
Q ss_pred HHCCCCEEEEECHH-----------HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 82799889980387-----------859889999999997195230100307898470156752274
Q gi|254781026|r 78 SLAHNGVLFLDEIP-----------EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 78 ~lAh~GVLflDE~~-----------e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
+ +--.|+|||||+ |+.+.++.+|+.-|.+=...- +.-+..++|||+|-
T Consensus 280 ~-~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~-------~~g~~VlVIgATnR 338 (802)
T KOG0733 280 S-NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK-------TKGDPVLVIGATNR 338 (802)
T ss_pred C-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCEEEEECCCC
T ss_conf 6-69759985110013644045788999999999998510025666-------68997699824789
No 87
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=98.62 E-value=4.4e-08 Score=68.19 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=53.9
Q ss_pred HHHHC-CCCEEEEECHHHCC------------HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 99827-99889980387859------------889999999997195230100307898470156752274658878898
Q gi|254781026|r 76 EDSLA-HNGVLFLDEIPEFS------------PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 76 ~i~lA-h~GVLflDE~~e~~------------~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
++.+| ++||.||||+++.. ..|+..||--+|.-.|. .|.|.+-|=.=-|+.-||.+-.
T Consensus 242 Ai~~aEq~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~-tK~G~V~TdhILFIasGAFh~s-------- 312 (442)
T PRK05201 242 AIERVEQNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVS-TKYGMVKTDHILFIASGAFHVA-------- 312 (442)
T ss_pred HHHHHHHCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCEEEEECCCCCCCC--------
T ss_conf 9998876170451146565303578898977330788878875388555-6777602550345504500147--------
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 87643899999999851224321004259983885668885
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
+ |.. |-.-|.-||-+++.+.+++..+..
T Consensus 313 -K-----PSD-------LIPEl~GRlPv~v~L~~L~~~dl~ 340 (442)
T PRK05201 313 -K-----PSD-------LIPELQGRFPIRVELDALTEEDFV 340 (442)
T ss_pred -C-----CCH-------HHHHHCCCCEEEEECCCCCHHHHH
T ss_conf -8-----202-------249871755058882449999999
No 88
>KOG2004 consensus
Probab=98.62 E-value=8.7e-08 Score=66.47 Aligned_cols=120 Identities=23% Similarity=0.419 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC---CCCHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434---5682799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL---QVLPGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~---~~~pG~i 77 (186)
|+||||+|||-++|.++.-|-.= -.-.|+.|.... +.+-|--+ ...||-+
T Consensus 443 f~GPPGVGKTSI~kSIA~ALnRk--------FfRfSvGG~tDv-------------------AeIkGHRRTYVGAMPGki 495 (906)
T KOG2004 443 FVGPPGVGKTSIAKSIARALNRK--------FFRFSVGGMTDV-------------------AEIKGHRRTYVGAMPGKI 495 (906)
T ss_pred EECCCCCCCCCHHHHHHHHHCCC--------EEEEECCCCCCH-------------------HHHCCCCEEEECCCCHHH
T ss_conf 86899877321899999984874--------699853663427-------------------764254211001488489
Q ss_pred HH------CCCCEEEEECHHHCCH----HHHHHHHHHHHCCCE---EEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 82------7998899803878598----899999999971952---3010030789847015675227465887889887
Q gi|254781026|r 78 SL------AHNGVLFLDEIPEFSP----QTLNALRQPLETGEC---IIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN 144 (186)
Q Consensus 78 ~l------Ah~GVLflDE~~e~~~----~~l~~L~~~le~g~v---~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~ 144 (186)
.. .+|=+..|||+++.-. +--.+|+|.|.--++ ....-.+-+.+ ++.++|+|+|--
T Consensus 496 Iq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL-SkVLFicTAN~i---------- 564 (906)
T KOG2004 496 IQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL-SKVLFICTANVI---------- 564 (906)
T ss_pred HHHHHHHCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCCH-HHEEEEEECCCC----------
T ss_conf 999986177886588532234178877986899987439653553454202664211-106889853644----------
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHCCCEE
Q ss_conf 643899999999851224321004259
Q gi|254781026|r 145 VCIRGPRCATEYQARISGPLMDRIDIR 171 (186)
Q Consensus 145 ~c~c~~~~~~~Y~~rls~plldR~Dl~ 171 (186)
..|++|||||+.++
T Consensus 565 -------------dtIP~pLlDRMEvI 578 (906)
T KOG2004 565 -------------DTIPPPLLDRMEVI 578 (906)
T ss_pred -------------CCCCHHHHHHHHEE
T ss_conf -------------56985664122322
No 89
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.6e-08 Score=66.20 Aligned_cols=117 Identities=24% Similarity=0.247 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC-CCHHHCCCCCCCC-CHHHHH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752-1001102343456-827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS-VTIAALIGGGLQV-LPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~-~~~~~l~gg~~~~-~pG~i~ 78 (186)
|.|||||||||+|++++.-+- . +|...-.+ .+...++-.+... ..=..+
T Consensus 281 l~GpPGtGKT~lAkava~~~~-----------------------~------~fi~v~~~~l~sk~vGesek~ir~~F~~A 331 (494)
T COG0464 281 LYGPPGTGKTLLAKAVALESR-----------------------S------RFISVKGSELLSKWVGESEKNIRELFEKA 331 (494)
T ss_pred EECCCCCCHHHHHHHHHHHCC-----------------------C------CEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988999758999999875449-----------------------8------24884335554077659999999999999
Q ss_pred -HCCCCEEEEECHHHCC-----------HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf -2799889980387859-----------8899999999971952301003078984701567522746588788988764
Q gi|254781026|r 79 -LAHNGVLFLDEIPEFS-----------PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 79 -lAh~GVLflDE~~e~~-----------~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
..--.|+|+||+.-+- ..+++.|+..|....-. .+..+|+|+|....
T Consensus 332 ~~~~p~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~-----------~~v~vi~aTN~p~~---------- 390 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA-----------EGVLVIAATNRPDD---------- 390 (494)
T ss_pred HHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC-----------CCEEEEECCCCCCC----------
T ss_conf 966998897488666741289987637999999999997475443-----------76489964798332----------
Q ss_pred CCCHHHHHHHHHHCCHHHHH--CCCEEEECCCCCHH
Q ss_conf 38999999998512243210--04259983885668
Q gi|254781026|r 147 IRGPRCATEYQARISGPLMD--RIDIRIAVPSRTHI 180 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~plld--R~Dl~v~~~~~~~~ 180 (186)
+..+++- |||-.+.+|..+..
T Consensus 391 -------------ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 391 -------------LDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred -------------CCHHHHCCCCCEEEEEECCCCHH
T ss_conf -------------68756243663037871798989
No 90
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.60 E-value=2e-07 Score=64.29 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC------CCCCCCCH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102------34345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI------GGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~------gg~~~~~p 74 (186)
|.||||||||-+|++++.-|- |... ..- -.++.-|.+=+-...+ +++...+|
T Consensus 199 L~G~pGtGKT~lAk~lA~~l~-----------------g~~~--~~r---v~~VqfhpsysYEDfi~Gyrp~~~gf~~~~ 256 (459)
T PRK11331 199 LQGPPGVGKTFVARRLAYLLT-----------------GEKA--PQR---VNMVQFHQSYSYEDFIQGYRPNGVGFRRKD 256 (459)
T ss_pred EECCCCCCHHHHHHHHHHHHH-----------------CCCC--CCC---EEEEEECCCCCHHHHHCCCCCCCCCCEECC
T ss_conf 658999887899999999970-----------------7887--784---689983588661787646056888613268
Q ss_pred HHHHH---------CCCCEEEEECHHHCCHH-HHHHHHHHHHCC-C-----EEEHH---CCEEEEECCCEEEEEECCCC
Q ss_conf 79982---------79988998038785988-999999999719-5-----23010---03078984701567522746
Q gi|254781026|r 75 GEDSL---------AHNGVLFLDEIPEFSPQ-TLNALRQPLETG-E-----CIIAR---ANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 75 G~i~l---------Ah~GVLflDE~~e~~~~-~l~~L~~~le~g-~-----v~i~R---~g~~~~~Pa~f~Lvaa~NPc 134 (186)
|.+.. -+.=+++|||+|.-+.+ +.--|+-.||.. + +.+.- .+.....|.+.-+|||||-.
T Consensus 257 G~f~~~~~~A~~~p~~~y~~iideinr~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNta 335 (459)
T PRK11331 257 GIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA 335 (459)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCC
T ss_conf 3699999999849898769998432033889999999999641256765225630036888533468865999850334
No 91
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.58 E-value=2.1e-07 Score=64.27 Aligned_cols=90 Identities=26% Similarity=0.321 Sum_probs=66.1
Q ss_pred CCHHHHHHC--CCCEEEEECHHHCCHHHHHHHHHHHHCCCE-EEHHCC---EEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 682799827--998899803878598899999999971952-301003---07898470156752274658878898876
Q gi|254781026|r 72 VLPGEDSLA--HNGVLFLDEIPEFSPQTLNALRQPLETGEC-IIARAN---RKISYPSRIQLIAAMNPCRCGMSNKDENV 145 (186)
Q Consensus 72 ~~pG~i~lA--h~GVLflDE~~e~~~~~l~~L~~~le~g~v-~i~R~g---~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~ 145 (186)
..-|.+..| -|....|||++..+++|++-|--+||.++- .+.--| ..++---.|++.||||| .|.||..+
T Consensus 1282 W~DGpLV~AMk~GdfFLlDEIsLAdDSVLERLNSVLE~~RtL~l~E~g~a~~~vtA~dgF~ffATMNP--GGDyGKkE-- 1357 (4600)
T COG5271 1282 WKDGPLVKAMKCGDFFLLDEISLADDSVLERLNSVLESQRTLYLTETGNAAEEVTAHDGFRFFATMNP--GGDYGKKE-- 1357 (4600)
T ss_pred ECCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCEEEEEECC--CCCCCHHH--
T ss_conf 13644787874287567620032326899999876430115887503774302563167168986078--87545211--
Q ss_pred CCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf 43899999999851224321004259983885668
Q gi|254781026|r 146 CIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 146 c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
||.+|++||- .+|||..++.
T Consensus 1358 --------------LSPALRNRFT-Eiwvp~m~D~ 1377 (4600)
T COG5271 1358 --------------LSPALRNRFT-EIWVPVMSDE 1377 (4600)
T ss_pred --------------CCHHHHCCCC-EEEECCCCCC
T ss_conf --------------7988860450-6750453664
No 92
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.56 E-value=3.7e-07 Score=62.79 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=43.4
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 79988998038785988999999999719523010030789847015675227465887889887643899999999851
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQAR 159 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~r 159 (186)
+..-|.+|||.+.++...+++||.-||+-.-+ ++|+|+.+ +| .|
T Consensus 124 ~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~-----------~~fIl~t~-~~------------------------~~ 167 (337)
T PRK12402 124 ADYKLILFDNAEALREDAQQALRRIMERYSET-----------CRFIFSTT-QP------------------------SK 167 (337)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC-----------EEEEEECC-CC------------------------CC
T ss_conf 88049997071317999999999887408876-----------69987238-64------------------------44
Q ss_pred CCHHHHHCCCEEEECCCCCHHH
Q ss_conf 2243210042599838856688
Q gi|254781026|r 160 ISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 160 ls~plldR~Dl~v~~~~~~~~~ 181 (186)
+..||++|. ..+.++++++.+
T Consensus 168 ii~tI~SRC-~~i~F~~~s~~~ 188 (337)
T PRK12402 168 LIPPIRSRC-LPLFFRPVPDDE 188 (337)
T ss_pred CCHHHHHHC-EEEECCCCCHHH
T ss_conf 752477624-454358989999
No 93
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.54 E-value=8.7e-07 Score=60.60 Aligned_cols=134 Identities=21% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCC--CHHHHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456--827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQV--LPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~--~pG~i~ 78 (186)
|-|.||+|||-+..+++.+.-. .-..-.+..+......-.+..... -||...+ -|=.-+
T Consensus 1548 LEGsPGVGKTSlItaLAr~tG~------------------kliRINLSeQTdL~DLfGsd~Pve-~~Gef~w~dapfL~a 1608 (4600)
T COG5271 1548 LEGSPGVGKTSLITALARKTGK------------------KLIRINLSEQTDLCDLFGSDLPVE-EGGEFRWMDAPFLHA 1608 (4600)
T ss_pred ECCCCCCCHHHHHHHHHHHHCC------------------CEEEEECCCCCHHHHHHCCCCCCC-CCCEEEECCCHHHHH
T ss_conf 2279986678999999997457------------------247863201102898737788755-676167424689998
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCC-CEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 279988998038785988999999999719-5230100307898470156752274658878898876438999999998
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETG-ECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ 157 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g-~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~ 157 (186)
+-+||-..+||+|..+.+|++.|-..|... ...|---..++..--+|.+.||.|||.-|.-..
T Consensus 1609 mr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRK---------------- 1672 (4600)
T COG5271 1609 MRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRK---------------- 1672 (4600)
T ss_pred HHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEECCCHHCCCCCC----------------
T ss_conf 5349879962410327889988899885014425631133252168705542048110279856----------------
Q ss_pred HHCCHHHHHCCCE
Q ss_conf 5122432100425
Q gi|254781026|r 158 ARISGPLMDRIDI 170 (186)
Q Consensus 158 ~rls~plldR~Dl 170 (186)
.|+.-+++||-.
T Consensus 1673 -gLPkSF~nRFsv 1684 (4600)
T COG5271 1673 -GLPKSFLNRFSV 1684 (4600)
T ss_pred -CCCHHHHHHHHE
T ss_conf -687888622115
No 94
>KOG0742 consensus
Probab=98.51 E-value=3e-07 Score=63.31 Aligned_cols=60 Identities=32% Similarity=0.404 Sum_probs=38.2
Q ss_pred EEEEECHHHC------------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 8998038785------------9889999999997195230100307898470156752274658878898876438999
Q gi|254781026|r 84 VLFLDEIPEF------------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPR 151 (186)
Q Consensus 84 VLflDE~~e~------------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~ 151 (186)
+|||||.+-| -++.+|+|+=---++ --+|.||.|+|-. |.
T Consensus 446 llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdq-------------SrdivLvlAtNrp--gd------------- 497 (630)
T KOG0742 446 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ-------------SRDIVLVLATNRP--GD------------- 497 (630)
T ss_pred EEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC-------------CCCEEEEEECCCC--CC-------------
T ss_conf 9986116789987520102588999998898762565-------------5426899605883--21-------------
Q ss_pred HHHHHHHHCCHHHHHCCCEEEECCCCCH
Q ss_conf 9999985122432100425998388566
Q gi|254781026|r 152 CATEYQARISGPLMDRIDIRIAVPSRTH 179 (186)
Q Consensus 152 ~~~~Y~~rls~plldR~Dl~v~~~~~~~ 179 (186)
|..++-||||=.|.+|=...
T Consensus 498 --------lDsAV~DRide~veFpLPGe 517 (630)
T KOG0742 498 --------LDSAVNDRIDEVVEFPLPGE 517 (630)
T ss_pred --------HHHHHHHHHHHHEECCCCCH
T ss_conf --------01678765554130689977
No 95
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.5e-07 Score=62.26 Aligned_cols=117 Identities=22% Similarity=0.358 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||||||+|||+.|.=- +..+ .|..++--....++-|.+ .--....+|
T Consensus 190 LYGPPGTGKTLLAkAVA~~T-----------------------~AtF-----IrvvgSElVqKYiGEGaR-lVRelF~lA 240 (406)
T COG1222 190 LYGPPGTGKTLLAKAVANQT-----------------------DATF-----IRVVGSELVQKYIGEGAR-LVRELFELA 240 (406)
T ss_pred EECCCCCCHHHHHHHHHHCC-----------------------CCEE-----EEECCHHHHHHHHCCCHH-HHHHHHHHH
T ss_conf 66899975889999987205-----------------------8669-----994219999998341169-999999987
Q ss_pred --C-CCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf --9-988998038785-----------98899999999971952301003078984701567522746588788988764
Q gi|254781026|r 81 --H-NGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 81 --h-~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
| -.|.||||++-. ++.|+-.++|-|.+=-=.-.|+ +.-+|+|+|-. |.
T Consensus 241 rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~--------nvKVI~ATNR~------D~---- 302 (406)
T COG1222 241 REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG--------NVKVIMATNRP------DI---- 302 (406)
T ss_pred HHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--------CEEEEEECCCC------CC----
T ss_conf 4149849998311223111136888850999999999998605889788--------76899855885------55----
Q ss_pred CCCHHHHHHHHHHCCHHHH--HCCCEEEECCCC
Q ss_conf 3899999999851224321--004259983885
Q gi|254781026|r 147 IRGPRCATEYQARISGPLM--DRIDIRIAVPSR 177 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~ 177 (186)
|-.+|| -|||-.|.+|-.
T Consensus 303 -------------LDPALLRPGR~DRkIEfplP 322 (406)
T COG1222 303 -------------LDPALLRPGRFDRKIEFPLP 322 (406)
T ss_pred -------------CCHHHCCCCCCCCEEECCCC
T ss_conf -------------57665088754530116898
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.49 E-value=4.4e-07 Score=62.33 Aligned_cols=118 Identities=26% Similarity=0.394 Sum_probs=75.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||||||.|||+++.=- +.|.|+-+ + |--..-.+|-|..+--+...||
T Consensus 161 LyGPPGtGKTLlAKAvA~et---------~ATFIrvV-------------------g-SElV~KyIGEGArLV~~~F~LA 211 (364)
T TIGR01242 161 LYGPPGTGKTLLAKAVAHET---------NATFIRVV-------------------G-SELVRKYIGEGARLVREVFELA 211 (364)
T ss_pred EECCCCCCHHHHHHHHHCCC---------CCEEEEEE-------------------H-HHHHHHHHCCHHHHHHHHHHHH
T ss_conf 00757976889999863145---------51268860-------------------4-4444444133168999999985
Q ss_pred C---CCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9---988998038785-----------98899999999971952301003078984701567522746588788988764
Q gi|254781026|r 81 H---NGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 81 h---~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
. =.|+||||++=. ++.++-.|+|-|.+=-=.-.| -+.-+|||+|-. ..
T Consensus 212 kEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~r--------g~VkviaATNR~---Di------- 273 (364)
T TIGR01242 212 KEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPR--------GNVKVIAATNRP---DI------- 273 (364)
T ss_pred HCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC--------CCEEEEEECCCC---HH-------
T ss_conf 306981686101333543211467787315788999999752488876--------761688720762---02-------
Q ss_pred CCCHHHHHHHHHHCCHHHH--HCCCEEEECCCCC
Q ss_conf 3899999999851224321--0042599838856
Q gi|254781026|r 147 IRGPRCATEYQARISGPLM--DRIDIRIAVPSRT 178 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~~ 178 (186)
|-.++| -|||-.+.||-.+
T Consensus 274 -------------lDPA~LRPGRFDR~IEVPlP~ 294 (364)
T TIGR01242 274 -------------LDPAILRPGRFDRIIEVPLPD 294 (364)
T ss_pred -------------CCCCCCCCCCCCCEEECCCCC
T ss_conf -------------043214888613257316978
No 97
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.45 E-value=5.2e-07 Score=61.92 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=24.0
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 88998038785988999999999719
Q gi|254781026|r 83 GVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 83 GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
-|++|||++.++.+.+++||..||+-
T Consensus 103 kiiiiDE~d~l~~~aq~aL~~~mE~~ 128 (318)
T PRK00440 103 KIIFLDEADNLTSDAQQALRRTMEMY 128 (318)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 89998685532255678887643105
No 98
>PHA02244 ATPase-like protein
Probab=98.42 E-value=1.6e-06 Score=59.07 Aligned_cols=127 Identities=23% Similarity=0.395 Sum_probs=82.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC--CCCCCCCHHHHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102--343456827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI--GGGLQVLPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~--gg~~~~~pG~i~ 78 (186)
|.|+.|+|||.+|+.++.-| ++++ |.. |....... ..+.. .|.....|=-=.
T Consensus 124 L~G~AGsGKt~~A~qIA~aL-dl~F---------Yf~-gAI~~ef~---------------L~Gf~DAnG~yh~T~f~ka 177 (383)
T PHA02244 124 LKGGAGSGKNHIAEQIAEAL-DLDF---------YFM-NAIMDEFE---------------LKGFIDANGKFHETPFYEA 177 (383)
T ss_pred EECCCCCCHHHHHHHHHHHH-CCCC---------EEC-HHHHHHHH---------------CCCEECCCCCEECCHHHHH
T ss_conf 97588886348999999985-8882---------441-32301343---------------0125648996726389999
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf 279988998038785988999999999719523010030789847015675227465887889887643899999999--
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEY-- 156 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y-- 156 (186)
--|+|++++||++--+|.++-.|-.++..+.....-+ .+..| -+|.+|+|.|--.-| .+. .|
T Consensus 178 Fk~GGLfLlDEiDASnP~aL~~lNaALAN~fm~FPdG-~V~~H-edFr~IAagNT~G~G--ad~------------~YVG 241 (383)
T PHA02244 178 FKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADE-RVTAH-EDFRVISAGNTLGKG--ADH------------IYVA 241 (383)
T ss_pred HHCCCEEEEEHHCCCCHHHHHHHHHHHHCCCCCCCCC-HHHCC-CCEEEEEECCCCCCC--CCC------------CCCC
T ss_conf 8618879973200448799999989986476347642-11005-763899724656778--872------------2114
Q ss_pred HHHCCHHHHHCCC
Q ss_conf 8512243210042
Q gi|254781026|r 157 QARISGPLMDRID 169 (186)
Q Consensus 157 ~~rls~plldR~D 169 (186)
.++|-++-||||-
T Consensus 242 RnqLD~ATLDRFv 254 (383)
T PHA02244 242 RNKIDGATLDRFA 254 (383)
T ss_pred CCCCCHHHHHHEE
T ss_conf 4545646462036
No 99
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.5e-07 Score=62.90 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCC--------C
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345--------6
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQ--------V 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~--------~ 72 (186)
|+||.|+|||.||+-|+.+|--. + +|. -.++-|+++..|--.. .
T Consensus 102 LiGPTGsGKTlLAqTLAk~LnVP-F-------aiA--------------------DATtLTEAGYVGEDVENillkLlqa 153 (408)
T COG1219 102 LIGPTGSGKTLLAQTLAKILNVP-F-------AIA--------------------DATTLTEAGYVGEDVENILLKLLQA 153 (408)
T ss_pred EECCCCCCHHHHHHHHHHHHCCC-E-------EEC--------------------CCCCHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98889975779999999984898-4-------751--------------------4441210663550089999999987
Q ss_pred CHHHHHHCCCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 82799827998899803878598--------------89999999997195230100307898470156752274
Q gi|254781026|r 73 LPGEDSLAHNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 73 ~pG~i~lAh~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
--..+.+|-+||.|+||+++..+ .++++|+.-+|--..+|---|..-.=.-.|+-|-|+|=
T Consensus 154 adydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NI 228 (408)
T COG1219 154 ADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNI 228 (408)
T ss_pred CCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCE
T ss_conf 645888882885998510254205789872343673589999999970751023999888798420488737634
No 100
>KOG0745 consensus
Probab=98.28 E-value=1.3e-06 Score=59.65 Aligned_cols=86 Identities=28% Similarity=0.407 Sum_probs=57.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCC--------CCC
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343--------456
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGG--------LQV 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~--------~~~ 72 (186)
|+||.|+|||.||+-|+.+|--. + +|-. -++-+.++.+|-- ..-
T Consensus 231 llGPtGsGKTllaqTLAr~ldVP-f-------aIcD--------------------cTtLTQAGYVGeDVEsvi~KLl~~ 282 (564)
T KOG0745 231 LLGPTGSGKTLLAQTLARVLDVP-F-------AICD--------------------CTTLTQAGYVGEDVESVIQKLLQE 282 (564)
T ss_pred EECCCCCCHHHHHHHHHHHHCCC-E-------EEEC--------------------CCCHHHCCCCCCCHHHHHHHHHHH
T ss_conf 97788876438999999970887-6-------8732--------------------552200553454299999999997
Q ss_pred CHHHHHHCCCCEEEEECHHHCC--------------HHHHHHHHHHHHCCCEEEHH
Q ss_conf 8279982799889980387859--------------88999999999719523010
Q gi|254781026|r 73 LPGEDSLAHNGVLFLDEIPEFS--------------PQTLNALRQPLETGECIIAR 114 (186)
Q Consensus 73 ~pG~i~lAh~GVLflDE~~e~~--------------~~~l~~L~~~le~g~v~i~R 114 (186)
--+.+.+|-.||.||||+++.. ..|+.+|+.-+|--.|.|-.
T Consensus 283 A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpe 338 (564)
T KOG0745 283 AEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPE 338 (564)
T ss_pred CCCCHHHHHCCEEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCC
T ss_conf 25789988267388760124413676545444566266999999985262770267
No 101
>KOG0738 consensus
Probab=98.28 E-value=1.9e-06 Score=58.61 Aligned_cols=116 Identities=27% Similarity=0.381 Sum_probs=60.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCC--CC-HHHH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345--68-2799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQ--VL-PGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~--~~-pG~i 77 (186)
|+||||+|||||||++++= +|.. + |-. ++++...-.-|... ++ -=++
T Consensus 250 m~GPPGTGKTlLAKAvATE------------------c~tT-----F-----FNV--SsstltSKwRGeSEKlvRlLFem 299 (491)
T KOG0738 250 MVGPPGTGKTLLAKAVATE------------------CGTT-----F-----FNV--SSSTLTSKWRGESEKLVRLLFEM 299 (491)
T ss_pred EECCCCCCHHHHHHHHHHH------------------HCCE-----E-----EEE--CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 5679997478999999886------------------1672-----7-----874--02456555325269999999999
Q ss_pred HHC-CCCEEEEECHH------------HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 827-99889980387------------85988999999999719523010030789847015675227465887889887
Q gi|254781026|r 78 SLA-HNGVLFLDEIP------------EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN 144 (186)
Q Consensus 78 ~lA-h~GVLflDE~~------------e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~ 144 (186)
++. --.+.|||||+ |.++.+-.-|+.-|.-=..+.+- --...++||+|-.+ +
T Consensus 300 ARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~-------~k~VmVLAATN~PW-----d--- 364 (491)
T KOG0738 300 ARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLEN-------SKVVMVLAATNFPW-----D--- 364 (491)
T ss_pred HHHHCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-------CEEEEEEECCCCCC-----C---
T ss_conf 98748853533567788725798650367888888999986334444456-------51699984368982-----0---
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHCCCE--EEECCC
Q ss_conf 64389999999985122432100425--998388
Q gi|254781026|r 145 VCIRGPRCATEYQARISGPLMDRIDI--RIAVPS 176 (186)
Q Consensus 145 ~c~c~~~~~~~Y~~rls~plldR~Dl--~v~~~~ 176 (186)
|-.+|+-||.= .|.+|.
T Consensus 365 ---------------iDEAlrRRlEKRIyIPLP~ 383 (491)
T KOG0738 365 ---------------IDEALRRRLEKRIYIPLPD 383 (491)
T ss_pred ---------------HHHHHHHHHHHHEEEECCC
T ss_conf ---------------5799999876303312878
No 102
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.27 E-value=8.3e-07 Score=60.71 Aligned_cols=123 Identities=24% Similarity=0.334 Sum_probs=73.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-C--------
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434-5--------
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-Q-------- 71 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-~-------- 71 (186)
|+|.||||||-+++.|+.-.-.-+..+.+....++++. ..++..|.. .
T Consensus 205 LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLD-----------------------l~~L~AGtkyRGeFEeRlk 261 (823)
T CHL00095 205 LIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLD-----------------------IGLLLAGTKYRGEFEERIK 261 (823)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEE-----------------------HHHHHHCCCCCHHHHHHHH
T ss_conf 23799987999999999976088998687599368842-----------------------8877533422267999999
Q ss_pred CCHHHHHHCCCCEEEEECHHHC--------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 6827998279988998038785--------98899999999971952301003078984701567522746588788988
Q gi|254781026|r 72 VLPGEDSLAHNGVLFLDEIPEF--------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDE 143 (186)
Q Consensus 72 ~~pG~i~lAh~GVLflDE~~e~--------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~ 143 (186)
-.--++..+.+=||||||+..+ .-++-|.|-.+|..|.+ ++|||+-+-+
T Consensus 262 ~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel---------------~~IGATT~~E-------- 318 (823)
T CHL00095 262 KIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKL---------------QCIGATTLEE-------- 318 (823)
T ss_pred HHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCC---------------EEEEECCHHH--------
T ss_conf 99999985798699973516532889766643178876578648986---------------6997078899--------
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHCCCE-EEECCCCCH
Q ss_conf 764389999999985122432100425-998388566
Q gi|254781026|r 144 NVCIRGPRCATEYQARISGPLMDRIDI-RIAVPSRTH 179 (186)
Q Consensus 144 ~~c~c~~~~~~~Y~~rls~plldR~Dl-~v~~~~~~~ 179 (186)
.++|..| .++|--||.. .|.-|+..+
T Consensus 319 ---------Yrk~iEk-D~AL~RRFq~V~V~EPs~e~ 345 (823)
T CHL00095 319 ---------YRKHIEK-DPALERRFQPVYVGEPSVEE 345 (823)
T ss_pred ---------HHHHHHC-CHHHHHHCCCCCCCCCCHHH
T ss_conf ---------9998530-58899626841028998799
No 103
>KOG0989 consensus
Probab=98.25 E-value=3.8e-06 Score=56.85 Aligned_cols=104 Identities=24% Similarity=0.203 Sum_probs=54.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH
Q ss_conf 9777860599999998874889--89788532300000027888756531112020377521001102343456827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP--LSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~--l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~ 78 (186)
|.||||||||..|+.++.-|-. +-+.-.||.++-+. .|......... .| +.+..... +.-.-.
T Consensus 62 FyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde-rGisvvr~Kik---~f---------akl~~~~~--~~~~~~ 126 (346)
T KOG0989 62 FYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE-RGISVVREKIK---NF---------AKLTVLLK--RSDGYP 126 (346)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCC-CCCCCHHHHHC---CH---------HHHHHCCC--CCCCCC
T ss_conf 66899986768999999985574235554243136600-14310066523---79---------98750255--656788
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEE
Q ss_conf 2799889980387859889999999997195230100307898470156752
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa 130 (186)
.-..-|..|||..-+..+.+.+||-.||+-.-+ .+|+||..
T Consensus 127 ~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~-----------trFiLIcn 167 (346)
T KOG0989 127 CPPFKIIILDECDSMTSDAQAALRRTMEDFSRT-----------TRFILICN 167 (346)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCC-----------EEEEEECC
T ss_conf 986328997416453099999999998625466-----------59999738
No 104
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=7.4e-06 Score=55.12 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCC-----CCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCH
Q ss_conf 977786059999999887488-----9897885323000000278887565311120203775210-0110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL-----PLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP-----~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~p 74 (186)
|.||+|+|||++|+.++.-|- ..++...|+.+. ....|.. .+ ++..-. .-+.+.. .+.+. ......|
T Consensus 43 FsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~-~i~~g~~-~D--viEida--asn~~VddIR~l~-e~v~~~P 115 (560)
T PRK06647 43 FSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCK-SIDNDSS-LD--VIEIDG--ASNTSVQDVRQIK-EEIMFPP 115 (560)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCC-CC--EEEECC--CCCCCHHHHHHHH-HHHCCCC
T ss_conf 32899878999999999996599999988887887888-8745999-87--576436--4548889999999-9863287
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 79982799889980387859889999999997195230100307898470156752274658878898876438999999
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCAT 154 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~ 154 (186)
+.+..-|..|||+..++....++||.-||+- |.+..+|.++|-.
T Consensus 116 ---~~~~yKV~IIDEahmLt~~A~NALLKtLEEP-------------P~~~~FILaTte~-------------------- 159 (560)
T PRK06647 116 ---ASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYIVFIFATTEV-------------------- 159 (560)
T ss_pred ---CCCCEEEEEECCHHHCCHHHHHHHHHHHHCC-------------CCCEEEEEECCCH--------------------
T ss_conf ---6687069996465655999999999986348-------------8755999977994--------------------
Q ss_pred HHHHHCCHHHHHCCCEEEECCCCC
Q ss_conf 998512243210042599838856
Q gi|254781026|r 155 EYQARISGPLMDRIDIRIAVPSRT 178 (186)
Q Consensus 155 ~Y~~rls~plldR~Dl~v~~~~~~ 178 (186)
.|+..++++|.. +....+++
T Consensus 160 ---~KI~~TI~SRCQ-~f~Fk~i~ 179 (560)
T PRK06647 160 ---HKLPATIKSRCQ-HFNFRLLS 179 (560)
T ss_pred ---HHCHHHHHHHHE-EEECCCCC
T ss_conf ---768489996510-41055599
No 105
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=5.2e-06 Score=56.04 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=52.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH------HHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC-CCHHHCCCCCCCCC
Q ss_conf 9777860599999998874889897------8853230000002788875653111202037752-10011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL------EESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS-VTIAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~------~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~-~~~~~l~gg~~~~~ 73 (186)
|.||+|+|||++||.++.-|-=.+. ...|+.+. .-..|... +...+. .+-+.. ...+.+. ......
T Consensus 44 F~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~-~I~~g~~~-DViEiD----aAs~~gVddIRel~-e~v~~~ 116 (462)
T PRK06305 44 FSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICK-EISSGTSL-DVIEID----GASHRGIEDIRQIN-ETVLFT 116 (462)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHCCCCC-CEEEEC----CCCCCCHHHHHHHH-HHHCCC
T ss_conf 038998599999999999967999988889887668889-98638999-868643----55344668999999-771008
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 2799827998899803878598899999999971952
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
| +.+..-|..|||...++.+..++||.-||+---
T Consensus 117 P---~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~ 150 (462)
T PRK06305 117 P---SKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (462)
T ss_pred C---CCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCC
T ss_conf 8---677505999815211799999999998618987
No 106
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=5.4e-06 Score=55.95 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC-----CHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC-CCHHHCCCCCCCCCH
Q ss_conf 97778605999999988748898-----978853230000002788875653111202037752-100110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL-----SLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS-VTIAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l-----~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~-~~~~~l~gg~~~~~p 74 (186)
|.||+|||||+.||.++.-|.=. ++...|+.+.- -..|... +...+. .+-+.+ .....+. ......|
T Consensus 43 f~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~-i~~g~~~-Dv~Eid----aas~~gvd~iR~~~-~~~~~~p 115 (541)
T PRK05563 43 FCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKK-INEGLLM-DVIEID----AASNNGVDDIREII-ENVKYPP 115 (541)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCCCC-CEEEEC----CCCCCCHHHHHHHH-HHCEECC
T ss_conf 038799589999999999957999888985751488999-8568988-736624----44447889999999-7610487
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC-CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 799827998899803878598899999999971952301003078984701567522-7465887889887643899999
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM-NPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~-NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
+.+..-|..|||+.-++....++||..||+- |.+..+|-|+ +|
T Consensus 116 ---~~~~~Kv~IiDEvhmls~~a~nallKtlEeP-------------p~~~~Filatte~-------------------- 159 (541)
T PRK05563 116 ---QEGKYKVYIMDEVHMLSQGAVNAFLKTLEEP-------------PSNVIFILATTDP-------------------- 159 (541)
T ss_pred ---CCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-------------CCCCEEEEECCCC--------------------
T ss_conf ---6787059999772338999999999998548-------------7775699976984--------------------
Q ss_pred HHHHHHCCHHHHHCCC
Q ss_conf 9998512243210042
Q gi|254781026|r 154 TEYQARISGPLMDRID 169 (186)
Q Consensus 154 ~~Y~~rls~plldR~D 169 (186)
+|+...+++|..
T Consensus 160 ----~ki~~tI~SRcq 171 (541)
T PRK05563 160 ----QKLPITILSRCQ 171 (541)
T ss_pred ----CCCCHHHHHHEE
T ss_conf ----427455674213
No 107
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.22 E-value=1.7e-06 Score=58.85 Aligned_cols=96 Identities=24% Similarity=0.393 Sum_probs=58.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-----C----
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434-----5----
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-----Q---- 71 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-----~---- 71 (186)
|+|+||||||-+++.|+.-.-.-+..+.+....++++. ..+++.|.. .
T Consensus 212 LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ld-----------------------l~~LiAGtkyRGefEeRlk 268 (758)
T PRK11034 212 LVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD-----------------------IGSLLAGTKYRGDFEKRFK 268 (758)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEE-----------------------HHHHHCCCCCCHHHHHHHH
T ss_conf 21699986999999999999738997655898899845-----------------------8778616864154999999
Q ss_pred CCHHHHHHCCCCEEEEECHHHC---------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 6827998279988998038785---------98899999999971952301003078984701567522746
Q gi|254781026|r 72 VLPGEDSLAHNGVLFLDEIPEF---------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 72 ~~pG~i~lAh~GVLflDE~~e~---------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
-.--++..+.+-||||||+..+ .-++-|.|..+|..|.+ ++|||+-+-
T Consensus 269 ~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l---------------~~IgaTT~~ 325 (758)
T PRK11034 269 ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI---------------RVIGSTTYQ 325 (758)
T ss_pred HHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC---------------EEEEECCHH
T ss_conf 999999857985999804344226887677764678874578746972---------------399943779
No 108
>KOG0731 consensus
Probab=98.21 E-value=3.6e-06 Score=56.97 Aligned_cols=112 Identities=29% Similarity=0.455 Sum_probs=59.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||||||.|||++|+-- . -||.+...+-=...+.|.+..-.-....+|
T Consensus 349 L~GPPGTGKTLLAKAiAGEA---------------------g--------VPF~svSGSEFvE~~~g~~asrvr~lf~~a 399 (774)
T KOG0731 349 LVGPPGTGKTLLAKAIAGEA---------------------G--------VPFFSVSGSEFVEMFVGVGASRVRDLFPLA 399 (774)
T ss_pred EECCCCCCHHHHHHHHHCCC---------------------C--------CCEEEECHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 87899986789999885305---------------------8--------964641337888876034348889999874
Q ss_pred CC---CEEEEECHHHCCH---------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 99---8899803878598---------------89999999997195230100307898470156752274658878898
Q gi|254781026|r 81 HN---GVLFLDEIPEFSP---------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 81 h~---GVLflDE~~e~~~---------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
-. -|.|+|||+-+.. ..+++|+-=| ||. ... ...+++|++|-.
T Consensus 400 r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em-Dgf--------~~~--~~vi~~a~tnr~-------- 460 (774)
T KOG0731 400 RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM-DGF--------ETS--KGVIVLAATNRP-------- 460 (774)
T ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCC--------CCC--CCEEEEECCCCC--------
T ss_conf 3269807971454200312556666788807888999887875-277--------677--847998116886--------
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHH--HCCCEEEECC
Q ss_conf 87643899999999851224321--0042599838
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLM--DRIDIRIAVP 175 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~ 175 (186)
+. |-.+|| -|||-++.++
T Consensus 461 d~---------------ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731 461 DI---------------LDPALLRPGRFDRQIQID 480 (774)
T ss_pred CC---------------CCHHHCCCCCCCCCEECC
T ss_conf 64---------------288764987555523246
No 109
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.20 E-value=2.6e-06 Score=57.78 Aligned_cols=107 Identities=27% Similarity=0.392 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCC-----CCCCCC--
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023-----434568--
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIG-----GGLQVL-- 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~g-----g~~~~~-- 73 (186)
+.|||||||||+||+++.=. .. |+- ......++| |...+.
T Consensus 156 FyGppGTGKTm~Akalane~---------------------kv--------p~l----~vkat~liGehVGdgar~Ihel 202 (368)
T COG1223 156 FYGPPGTGKTMMAKALANEA---------------------KV--------PLL----LVKATELIGEHVGDGARRIHEL 202 (368)
T ss_pred EECCCCCCHHHHHHHHHCCC---------------------CC--------CEE----EECHHHHHHHHHHHHHHHHHHH
T ss_conf 77899964879999872545---------------------78--------548----7116888887743598999999
Q ss_pred HHHHHHCCCCEEEEECHHHCC------------HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 279982799889980387859------------88999999999719523010030789847015675227465887889
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFS------------PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNK 141 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~------------~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~ 141 (186)
=-.-+.+--.|.||||++-.. -.++|+|+.-| ||.. ++.|. ..|||+|-..
T Consensus 203 y~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTel-Dgi~--eneGV--------vtIaaTN~p~------ 265 (368)
T COG1223 203 YERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTEL-DGIK--ENEGV--------VTIAATNRPE------ 265 (368)
T ss_pred HHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCC--CCCCE--------EEEEECCCHH------
T ss_conf 99887519849984002455530457886454999999999850-1744--57756--------9995059846------
Q ss_pred CCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEEC
Q ss_conf 887643899999999851224321004259983
Q gi|254781026|r 142 DENVCIRGPRCATEYQARISGPLMDRIDIRIAV 174 (186)
Q Consensus 142 ~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~ 174 (186)
-|..++.+||.=.+..
T Consensus 266 -----------------~LD~aiRsRFEeEIEF 281 (368)
T COG1223 266 -----------------LLDPAIRSRFEEEIEF 281 (368)
T ss_pred -----------------HCCHHHHHHHHHEEEE
T ss_conf -----------------5078888655650656
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.17 E-value=1.6e-06 Score=59.09 Aligned_cols=122 Identities=24% Similarity=0.380 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-----CC---
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434-----56---
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-----QV--- 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-----~~--- 72 (186)
|+|+||||||-+++.|+--.-.-+..+.+....++++. ...+..|.. .-
T Consensus 199 LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LD-----------------------lg~LvAGtkyRGeFEeRlk 255 (852)
T TIGR03346 199 LIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD-----------------------MGALIAGAKYRGEFEERLK 255 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEE-----------------------HHHHHCCCCCCHHHHHHHH
T ss_conf 12799987999999999998669999788518512752-----------------------8877521530078999999
Q ss_pred -CHHHHHHCC-CCEEEEECHHHC--------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf -827998279-988998038785--------9889999999997195230100307898470156752274658878898
Q gi|254781026|r 73 -LPGEDSLAH-NGVLFLDEIPEF--------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 73 -~pG~i~lAh-~GVLflDE~~e~--------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
.--++..++ +=||||||+.-+ .-++-|.|--+|..|.+ ++|||+-+-+
T Consensus 256 ~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGel---------------r~IgATT~~E------- 313 (852)
T TIGR03346 256 AVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGEL---------------HCIGATTLDE------- 313 (852)
T ss_pred HHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC---------------EEEEECCHHH-------
T ss_conf 999999858998799961255532688766641067774378747985---------------5998278999-------
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHCCC-EEEECCCCC
Q ss_conf 876438999999998512243210042-599838856
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLMDRID-IRIAVPSRT 178 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~plldR~D-l~v~~~~~~ 178 (186)
-++|..| .++|--||. +.|.-|+..
T Consensus 314 ----------Yrk~iEk-D~AL~RRFq~I~V~EPs~e 339 (852)
T TIGR03346 314 ----------YRKYIEK-DAALERRFQPVFVDEPTVE 339 (852)
T ss_pred ----------HHHHHHC-CHHHHHHCCCCCCCCCCHH
T ss_conf ----------9988322-6889973771204799868
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.16 E-value=1.4e-06 Score=59.32 Aligned_cols=122 Identities=23% Similarity=0.355 Sum_probs=67.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-----CCC--
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434-----568--
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-----QVL-- 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-----~~~-- 73 (186)
|+|+||||||-+++.|+.-.-.-+..+.+....++++. ..++..|.. .-+
T Consensus 204 LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LD-----------------------lg~L~AGakyRGeFEeRLk 260 (857)
T PRK10865 204 LIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD-----------------------MGALVAGAKYRGEFEERLK 260 (857)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEE-----------------------HHHHHHCCCCCHHHHHHHH
T ss_conf 87899988999999999999838999788169024733-----------------------8878614765211799999
Q ss_pred --HHHHHHCC-CCEEEEECHHHC--------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf --27998279-988998038785--------9889999999997195230100307898470156752274658878898
Q gi|254781026|r 74 --PGEDSLAH-NGVLFLDEIPEF--------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 74 --pG~i~lAh-~GVLflDE~~e~--------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
--++.... +=||||||+.-+ .-++-|.|--+|..|.+ ++|||+-+-+
T Consensus 261 ~il~ev~~~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRGel---------------r~IGATT~~E------- 318 (857)
T PRK10865 261 GVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL---------------HCVGATTLDE------- 318 (857)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCCCC---------------EEEEECCHHH-------
T ss_conf 999999847898699973435433688777753478886788737985---------------4999458999-------
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHCCCE-EEECCCCC
Q ss_conf 8764389999999985122432100425-99838856
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLMDRIDI-RIAVPSRT 178 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~plldR~Dl-~v~~~~~~ 178 (186)
-++|..| -++|--||.. .|.-|+..
T Consensus 319 ----------Yrk~iEk-D~AL~RRFq~V~V~EPs~e 344 (857)
T PRK10865 319 ----------YRQYIEK-DAALERRFQKVFVAEPSVE 344 (857)
T ss_pred ----------HHHHCCC-CHHHHHHCCCCCCCCCCHH
T ss_conf ----------9987134-5889985371006899879
No 112
>KOG1808 consensus
Probab=98.16 E-value=2.4e-06 Score=57.98 Aligned_cols=127 Identities=22% Similarity=0.245 Sum_probs=95.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC------CCCCCCCH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102------34345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI------GGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~------gg~~~~~p 74 (186)
|.||.++|||-+.+.++..+ |. ...+.-..+|+.....+. .|.-.++-
T Consensus 445 lqG~tssGKtsii~~la~~~------------------g~--------~~vrinnhehtd~qeyig~y~~~~~g~l~fre 498 (1856)
T KOG1808 445 LQGPTSSGKTSIIKELARAT------------------GK--------NIVRINNHEHTDLQEYIGTYVADDNGDLVFRE 498 (1856)
T ss_pred EECCCCCCCHHHHHHHHHHH------------------CC--------CCEEHHCCCCCHHHHHHHHHEECCCCCEEEEH
T ss_conf 75476768115999999985------------------46--------73420024633399998665007889725534
Q ss_pred HHHHHC--CCCEEEEECHHHCCHHHHHHHHHHHHC-CCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 799827--998899803878598899999999971-95230100307898470156752274658878898876438999
Q gi|254781026|r 75 GEDSLA--HNGVLFLDEIPEFSPQTLNALRQPLET-GECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPR 151 (186)
Q Consensus 75 G~i~lA--h~GVLflDE~~e~~~~~l~~L~~~le~-g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~ 151 (186)
|.++.| ||-..++||+|..+.+++++|-..+++ ..+.|......+.---+|+|.++-||. |.++..
T Consensus 499 g~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~--~~y~gr--------- 567 (1856)
T KOG1808 499 GVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP--GTYGGR--------- 567 (1856)
T ss_pred HHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHCCCC--CCCCHH---------
T ss_conf 689999870877984020124067899998404540412563443232247012345430776--665315---------
Q ss_pred HHHHHHHHCCHHHHHCCCE
Q ss_conf 9999985122432100425
Q gi|254781026|r 152 CATEYQARISGPLMDRIDI 170 (186)
Q Consensus 152 ~~~~Y~~rls~plldR~Dl 170 (186)
..+|.+|++||..
T Consensus 568 ------k~lsRa~~~rf~e 580 (1856)
T KOG1808 568 ------KILSRALRNRFIE 580 (1856)
T ss_pred ------HHHHHCCCCCCHH
T ss_conf ------6655314440023
No 113
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=1.3e-05 Score=53.63 Aligned_cols=98 Identities=20% Similarity=0.247 Sum_probs=51.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC-----CHHHHHHHHCEEECCCCCCCCCCCCCCCEEECC-CCCCCHHHCCCCCCCCCH
Q ss_conf 97778605999999988748898-----978853230000002788875653111202037-752100110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL-----SLEESLEVSMIYSISGHSSHEYSFIQNRPFRSP-HHSVTIAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l-----~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~-~~~~~~~~l~gg~~~~~p 74 (186)
|.||+|||||++|+.++.-|-=. .+.-.|+.+. .-..|... + ++. +... ........-+-......|
T Consensus 43 F~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~-~i~~g~~~-D--viE---iDaasn~gVd~IR~i~~~v~~~P 115 (563)
T PRK06674 43 FSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCL-GITNGSIS-D--VLE---IDAASNNGVDEIRDIRDKVKFAP 115 (563)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCCC-C--EEE---ECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 12899868999999999985799999988776687899-98558998-7--798---52555578799999999826488
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 7998279988998038785988999999999719
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
+.+..-|..|||...++....|+||..||+=
T Consensus 116 ---~~~~yKV~IIDeah~Lt~~A~NALLKtLEEP 146 (563)
T PRK06674 116 ---SAVEYKVYIIDEVHMLSIGAFNALLKTLEEP 146 (563)
T ss_pred ---CCCCEEEEEEECHHHCCHHHHHHHHHHHHCC
T ss_conf ---6787379998545637999999999986388
No 114
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.10 E-value=1.6e-06 Score=59.03 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC-----CCCCC-H
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234-----34568-2
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGG-----GLQVL-P 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg-----~~~~~-p 74 (186)
|+|.||||||-+++.||.-.-.-+..+.+....++++. ..+++-| ...-+ .
T Consensus 213 LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLD-----------------------lg~LvAGtkyRGeFEeRlk 269 (852)
T TIGR03345 213 LTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD-----------------------LGLLQAGASVKGEFENRLK 269 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEE-----------------------HHHHHHCCCCCCHHHHHHH
T ss_conf 65799987999999999999769998677438567867-----------------------8888640357635999999
Q ss_pred ---HHHHHCCC-CEEEEECHHHC--------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf ---79982799-88998038785--------9889999999997195230100307898470156752274658878898
Q gi|254781026|r 75 ---GEDSLAHN-GVLFLDEIPEF--------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 75 ---G~i~lAh~-GVLflDE~~e~--------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
-++..+.+ =||||||+.-+ .-++-|.|--+|..|.+ ++|||+-+-+
T Consensus 270 ~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGel---------------r~IGATT~~E------- 327 (852)
T TIGR03345 270 SVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL---------------RTIAATTWAE------- 327 (852)
T ss_pred HHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC---------------EEEEECCHHH-------
T ss_conf 999999848997699963487752899888862278875178737873---------------4998357899-------
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHCCC-EEEECCCCC
Q ss_conf 876438999999998512243210042-599838856
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLMDRID-IRIAVPSRT 178 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~plldR~D-l~v~~~~~~ 178 (186)
-++|..| .++|--||. +.|.-|+..
T Consensus 328 ----------Yrk~iEk-D~AL~RRFq~V~V~EPs~e 353 (852)
T TIGR03345 328 ----------YKKYFEK-DPALTRRFQVVKVEEPDEE 353 (852)
T ss_pred ----------HHHHHHC-CHHHHHHCCCCCCCCCCHH
T ss_conf ----------9888642-6889962475527999879
No 115
>KOG0737 consensus
Probab=98.00 E-value=3.8e-06 Score=56.83 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=29.2
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHCCCE--EEHHCCEEEEECCCEEEEEECCC
Q ss_conf 98899803878598899999999971952--30100307898470156752274
Q gi|254781026|r 82 NGVLFLDEIPEFSPQTLNALRQPLETGEC--IIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 82 ~GVLflDE~~e~~~~~l~~L~~~le~g~v--~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
--|.||||++-|-..=...=||+|..=.. -..=.|....-..+.+++||+|-
T Consensus 187 P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737 187 PSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred CCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 615656658889864046427999999999999861646788715999707999
No 116
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.00 E-value=1.2e-05 Score=53.80 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=62.6
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 27998279988998038785988999999999719523010030789847015675227465887889887643899999
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
-|++..||+|++=+=|+-+.+...+--|+.+-++|.+.... ....+|.+-++||.+|-.+---+.
T Consensus 226 ~G~l~~aNrGl~efvE~~K~~~~~L~~lL~atQE~~i~~~~--~~~~i~~D~vIiahsNe~E~~~f~------------- 290 (358)
T pfam08298 226 SGALNRANQGLMEFVEMFKAPIKVLHPLLTATQEGNYNSTE--KFSAIPFDGIILAHSNESEWNSFK------------- 290 (358)
T ss_pred CCCEECCCCCCEEEHHHHCCCHHHHHHHHCCCCCCCCCCCC--CCCCEECCEEEECCCCHHHHHHHH-------------
T ss_conf 77000035775540987618299999985221246224778--756033142687689849999874-------------
Q ss_pred HHHHHHCCHHHHHCCCEEEECC
Q ss_conf 9998512243210042599838
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~ 175 (186)
-++--.+|+||+.+ |.||
T Consensus 291 ---~~~~~eA~~dR~~~-v~vP 308 (358)
T pfam08298 291 ---SNKNNEAFLDRIVV-IKVP 308 (358)
T ss_pred ---CCCCCHHHHCCEEE-EECC
T ss_conf ---48643466563799-9676
No 117
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.00 E-value=9.2e-06 Score=54.59 Aligned_cols=83 Identities=22% Similarity=0.169 Sum_probs=62.3
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 27998279988998038785988999999999719523010030789847015675227465887889887643899999
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~ 153 (186)
-|++..||+|++=+=|+-+.+.+.+-.|+-+-++|.+.+. +.....|.+-++||.+|..+-.-+..
T Consensus 229 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqE~~vk~~--~~~~~~~~d~viia~sNe~E~~~f~~------------ 294 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQRFKS------------ 294 (361)
T ss_pred CCHHHHCCCCCEEHHHHHHCCHHHHHHHHCCCCCCEECCC--CCCCCCCCCEEEEECCCHHHHHHHHC------------
T ss_conf 5345440476000487751759999998420103604178--86565324515882498599987644------------
Q ss_pred HHHHHHCCHHHHHCCCEEEECC
Q ss_conf 9998512243210042599838
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~ 175 (186)
++--.+|+||+.++ .||
T Consensus 295 ----~~~~ea~~dR~~~i-~vP 311 (361)
T smart00763 295 ----NKKNEALLDRIIKV-KVP 311 (361)
T ss_pred ----CCCCHHHHCCEEEE-ECC
T ss_conf ----84105555027998-687
No 118
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.8e-05 Score=52.91 Aligned_cols=113 Identities=28% Similarity=0.361 Sum_probs=62.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC----HHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568----279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL----PGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~----pG~ 76 (186)
|+||||||||+|||++++-..- ||.....+.-.....|-+...- --+
T Consensus 188 LvGpPGTGKTLLAkAvAgEA~V-----------------------------PFf~iSGS~FVemfVGvGAsRVRdLF~qA 238 (596)
T COG0465 188 LVGPPGTGKTLLAKAVAGEAGV-----------------------------PFFSISGSDFVEMFVGVGASRVRDLFEQA 238 (596)
T ss_pred EECCCCCCCHHHHHHHHCCCCC-----------------------------CCEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 8559998727899998454689-----------------------------83530344464431478838889999985
Q ss_pred HHHCCCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 9827998899803878598--------------89999999997195230100307898470156752274658878898
Q gi|254781026|r 77 DSLAHNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 77 i~lAh~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
-..|. .|.||||++--.+ ..+++|+.=|+--. -..-.+++||+|-. |
T Consensus 239 kk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-----------~~~gviviaaTNRp------d- 299 (596)
T COG0465 239 KKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----------GNEGVIVIAATNRP------D- 299 (596)
T ss_pred HCCCC-CEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----------CCCCEEEECCCCCC------C-
T ss_conf 51599-66987634331454577889980699999988885201578-----------88754885267874------3-
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHH--HCCCEEEECCCC
Q ss_conf 87643899999999851224321--004259983885
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLM--DRIDIRIAVPSR 177 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~ 177 (186)
. +-.+|| -|||-+|.|+..
T Consensus 300 V----------------lD~ALlRpgRFDRqI~V~~P 320 (596)
T COG0465 300 V----------------LDPALLRPGRFDRQILVELP 320 (596)
T ss_pred C----------------CHHHHCCCCCCCEEEECCCC
T ss_conf 3----------------31765288776625544785
No 119
>KOG0727 consensus
Probab=97.97 E-value=8.8e-06 Score=54.69 Aligned_cols=97 Identities=24% Similarity=0.338 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|.||||||||||+++.+.-- .+ .+ +|..++--....++.|.+- .--...+|
T Consensus 194 lygppg~gktml~kava~~t----------------~a-------~f-----irvvgsefvqkylgegprm-vrdvfrla 244 (408)
T KOG0727 194 LYGPPGTGKTMLAKAVANHT----------------TA-------AF-----IRVVGSEFVQKYLGEGPRM-VRDVFRLA 244 (408)
T ss_pred EECCCCCCHHHHHHHHHHCC----------------CH-------HE-----EEECCHHHHHHHHCCCCHH-HHHHHHHH
T ss_conf 75799975789999986126----------------11-------14-----4630189999985548389-99999987
Q ss_pred C---CCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 9---988998038785-----------98899999999971952301003078984701567522746
Q gi|254781026|r 81 H---NGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 81 h---~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
. -.|.||||++-. ++.++..|++-|.+-- |. .--++.-+|+|+|-.
T Consensus 245 kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmd------gf--dq~~nvkvimatnra 304 (408)
T KOG0727 245 KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMD------GF--DQTTNVKVIMATNRA 304 (408)
T ss_pred HCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC------CC--CCCCCEEEEEECCCC
T ss_conf 6169837986224567664124444631899999999997514------76--766655899832755
No 120
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=2.6e-05 Score=51.91 Aligned_cols=100 Identities=22% Similarity=0.226 Sum_probs=52.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHH--H---HHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 97778605999999988748898978--8---532300000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLE--E---SLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~--e---~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
|.||+|||||++|+.++..|-=.+.. + .|..+. .-..|.... ++... ...........-+.......|
T Consensus 42 F~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~-~i~~g~~~D---viEid--aas~~gVd~IRei~~~~~~~P- 114 (557)
T PRK07270 42 FSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICR-DITNGSLED---VIEID--AASNNGVDEIRDIRDKSTYAP- 114 (557)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCCCC---EEEEC--CCCCCCHHHHHHHHHHHCCCC-
T ss_conf 10899868999999999995799989999888777999-987589997---48734--777678899999999842387-
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 9982799889980387859889999999997195
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
+.+..-|..|||...++....++||..||+--
T Consensus 115 --~~~~yKV~IIDEah~Ls~~A~NALLKtLEEPP 146 (557)
T PRK07270 115 --SRATYKVYIIDEVHMLSTGAFNALLKTLEEPT 146 (557)
T ss_pred --CCCCEEEEEECCHHHCCHHHHHHHHHHHHCCC
T ss_conf --77883899971445349999998999852899
No 121
>TIGR00764 lon_rel ATP-dependent protease, putative; InterPro: IPR004663 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the archaeal lon protease homologs, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein conserved region.; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0030163 protein catabolic process.
Probab=97.87 E-value=1.4e-05 Score=53.42 Aligned_cols=82 Identities=24% Similarity=0.298 Sum_probs=64.6
Q ss_pred CCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEE--------EEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 68279982799889980387859889999999997195230100307--------8984701567522746588788988
Q gi|254781026|r 72 VLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRK--------ISYPSRIQLIAAMNPCRCGMSNKDE 143 (186)
Q Consensus 72 ~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~--------~~~Pa~f~Lvaa~NPcpcG~~~~~~ 143 (186)
..+|.+..||+||||+||+..+.-...+.++.+|++....++-..-. .-.|++|+|+++.|-- .
T Consensus 226 ~~~g~~h~~~~g~l~~d~~~~~~~~~~~~~l~~~~~~~~p~~g~~~~~~g~~~~~~p~pcdf~l~~~g~~~------~-- 297 (662)
T TIGR00764 226 VEAGAIHRAHKGVLYIDEIGTLPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD------D-- 297 (662)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCHH------H--
T ss_conf 23221233205505540113221135788887654113543567765556412115666214455146545------6--
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHCCC---EEEEC
Q ss_conf 76438999999998512243210042---59983
Q gi|254781026|r 144 NVCIRGPRCATEYQARISGPLMDRID---IRIAV 174 (186)
Q Consensus 144 ~~c~c~~~~~~~Y~~rls~plldR~D---l~v~~ 174 (186)
...+..||++|++ -.+.+
T Consensus 298 -------------~~~~~~~l~~~~~g~gy~~~~ 318 (662)
T TIGR00764 298 -------------LEGLHPALRSRIRGYGYEVYL 318 (662)
T ss_pred -------------HHHCCHHHHHHHCCCCEEEEE
T ss_conf -------------541004566543014416887
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.86 E-value=1.1e-05 Score=54.04 Aligned_cols=110 Identities=23% Similarity=0.386 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHCEEECC-CCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCC----CCH
Q ss_conf 97778605999999988748898-978853230000002-788875653111202037752100110234345----682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL-SLEESLEVSMIYSIS-GHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQ----VLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l-~~~e~le~~~i~s~~-g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~----~~p 74 (186)
+||.||||||=+|..||----.= ...|.|..++|||+. |. +..-.=| -|-.- --=
T Consensus 234 ~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~------LLAGTKY-------------RGDFE~RLK~V~ 294 (774)
T TIGR02639 234 LVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGT------LLAGTKY-------------RGDFEERLKAVV 294 (774)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHH------HHHHCCC-------------CCHHHHHHHHHH
T ss_conf 044888644899999999864156467002478345404345------6410245-------------424789999999
Q ss_pred HHHHHCCCC-EEEEECHHHC---------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 799827998-8998038785---------988999999999719523010030789847015675227465887889887
Q gi|254781026|r 75 GEDSLAHNG-VLFLDEIPEF---------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDEN 144 (186)
Q Consensus 75 G~i~lAh~G-VLflDE~~e~---------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~ 144 (186)
-||..-.+= |||||||.-. +=+.=|.|--+|++|.+ ..||+|==-+=..+++.++
T Consensus 295 ~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~i---------------RCIGsTTy~EY~~~FeKDr 359 (774)
T TIGR02639 295 SEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKI---------------RCIGSTTYEEYKNHFEKDR 359 (774)
T ss_pred HHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCE---------------EEECCCCHHHHHCHHHCCC
T ss_conf 9985289995466411010331787875155244321125307877---------------8622652486411101020
No 123
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.74 E-value=4.4e-05 Score=50.62 Aligned_cols=146 Identities=18% Similarity=0.108 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCC--CEEECCCCCCCHHHCCCCCCCCCHHHHH
Q ss_conf 97778605999999988748898978853230000002788875653111--2020377521001102343456827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQN--RPFRSPHHSVTIAALIGGGLQVLPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~--~p~~~~~~~~~~~~l~gg~~~~~pG~i~ 78 (186)
++|++|+|||++.|.+..-|++-... ..+-......... +... ..+-.+....+...+..--....-..-.
T Consensus 48 ltGe~GtGKTtllr~l~~~l~~~~~~------~~~i~~~~l~~~~-ll~~i~~~lg~~~~~~~~~~~~~~l~~~L~~~~~ 120 (269)
T TIGR03015 48 ITGEVGAGKTTLIRNLLKRLDQERVV------AAKLVNTRVDAED-LLRMVAADFGLETEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCEE------EEEECCCCCCHHH-HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97299898899999999845934548------9997699999999-9999999859898898999999999999999996
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 27998899803878598899999999971952301003078984701567522746588788988764389999999985
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
.-.+-||.|||...++.++++.||.-++-..-. ..-+++|...-|-= .+.++
T Consensus 121 ~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~~----------~~ll~iiL~GqpeL------------------~~~L~ 172 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDN----------AKLLQIFLVGQPEF------------------RETLQ 172 (269)
T ss_pred CCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCC----------CCCEEEEEECCHHH------------------HHHHC
T ss_conf 699469997242219999999999997013588----------87048999578679------------------99872
Q ss_pred -HCCHHHHHCCCEEEECCCCCHHH
Q ss_conf -12243210042599838856688
Q gi|254781026|r 159 -RISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 159 -rls~plldR~Dl~v~~~~~~~~~ 181 (186)
.--.+|.+||..++.+++.+..+
T Consensus 173 ~~~~~~l~qRI~~~~~L~pl~~ee 196 (269)
T TIGR03015 173 SPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred CCCHHHHHHCEEEEEEECCCCHHH
T ss_conf 740254555076799847999899
No 124
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=6.3e-05 Score=49.68 Aligned_cols=93 Identities=28% Similarity=0.397 Sum_probs=58.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC----CCCHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434----568279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL----QVLPGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~----~~~pG~ 76 (186)
|+|+||||||-++..++.-...-+..+.|....+++..=. .+ ...+-.-|.. .-.--+
T Consensus 196 LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g-----~L-------------vAGakyRGeFEeRlk~vl~e 257 (786)
T COG0542 196 LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG-----SL-------------VAGAKYRGEFEERLKAVLKE 257 (786)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHH-----HH-------------HCCCCCCCCHHHHHHHHHHH
T ss_conf 7668988899999899999746999978758879971487-----67-------------46465357389999999999
Q ss_pred HHHCCCCEEEEECHHHC---------CHHHHHHHHHHHHCCCEE
Q ss_conf 98279988998038785---------988999999999719523
Q gi|254781026|r 77 DSLAHNGVLFLDEIPEF---------SPQTLNALRQPLETGECI 111 (186)
Q Consensus 77 i~lAh~GVLflDE~~e~---------~~~~l~~L~~~le~g~v~ 111 (186)
+..+.+=||||||+... .-++-|.|..+|..|.+.
T Consensus 258 v~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~ 301 (786)
T COG0542 258 VEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR 301 (786)
T ss_pred HHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 85179849998235540577766666512566467787458737
No 125
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00015 Score=47.49 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC---------CHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCC-CCCHHHCCCCCC
Q ss_conf 97778605999999988748898---------97885323000000278887565311120203775-210011023434
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL---------SLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHH-SVTIAALIGGGL 70 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l---------~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~-~~~~~~l~gg~~ 70 (186)
|.||+|||||+.||-++.-|.=. .+...|+.+.- -..|... +...+. .+-+. ....+.+... .
T Consensus 48 f~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~-i~~~~~~-dv~EiD----aas~~gv~~ir~l~~~-~ 120 (507)
T PRK06645 48 LTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCIS-FNNHNHP-DIIEID----AASKTSVDDIRRIIES-A 120 (507)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHCCCCC-CEEEEE----CCCCCCHHHHHHHHHH-C
T ss_conf 4587997889999999999679998888998888888767899-8658999-859963----7888888999999863-5
Q ss_pred CCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 5682799827998899803878598899999999971952
Q gi|254781026|r 71 QVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 71 ~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
...| +.+..-|..|||+.-++.+..++||.-||+---
T Consensus 121 ~~~p---~~~~~kv~iidE~hmls~~a~nallktlEepp~ 157 (507)
T PRK06645 121 EYKP---LQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP 157 (507)
T ss_pred CCCC---CCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCC
T ss_conf 5178---767435899521422489999999997427864
No 126
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00014 Score=47.71 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=42.3
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 27998899803878598899999999971952301003078984701567522746588788988764389999999985
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
....-|.+|||++.++.+..++|+-.||+.... +.|+|++. +| .
T Consensus 107 ~~~~kviiidead~mt~~A~nallk~lEep~~~-----------~~~il~~n-~~------------------------~ 150 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDAANALLKTLEEPPKN-----------TRFILITN-DP------------------------S 150 (325)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCC-----------EEEEEEEC-CH------------------------H
T ss_conf 677269997320326988887675433248887-----------16999749-85------------------------5
Q ss_pred HCCHHHHHCCCEEEEC
Q ss_conf 1224321004259983
Q gi|254781026|r 159 RISGPLMDRIDIRIAV 174 (186)
Q Consensus 159 rls~plldR~Dl~v~~ 174 (186)
++-.||.+|....-.-
T Consensus 151 ~il~tI~SRc~~i~f~ 166 (325)
T COG0470 151 KILPTIRSRCQRIRFK 166 (325)
T ss_pred HCHHHHHHHEEEEECC
T ss_conf 5647877560788767
No 127
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.00011 Score=48.16 Aligned_cols=113 Identities=21% Similarity=0.215 Sum_probs=58.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-----HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 977786059999999887488989-----788532300000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-----LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
|.|+.|+|||++||-++.-|.=-+ +.-.|+.+. .-..|... + ++.. .-.+--.....+.+... ....|
T Consensus 43 f~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~-~i~~g~~~-d--~~ei-daas~~~vd~~rel~~~-~~y~p- 115 (643)
T PRK07994 43 FSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR-EIEQGRFV-D--LIEI-DAASRTKVEDTRDLLDN-VQYAP- 115 (643)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCCC-C--EEEE-ECCCCCCHHHHHHHHHH-CCCCC-
T ss_conf 45899888889999999996799999999787677689-88658988-7--5886-36777888999999984-46688-
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 99827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
+....-|..|||+.-++.+..|+|+.-||+---++ .|+| ||+.|-
T Consensus 116 --~~~r~kvyiidEvhmls~~afnalLKtlEePp~hv-----------~fil-aTT~~~ 160 (643)
T PRK07994 116 --ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHV-----------KFLL-ATTDPQ 160 (643)
T ss_pred --CCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCHHC-----------EEEE-ECCCHH
T ss_conf --77853699972210158999999998623786100-----------8998-607745
No 128
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=7.3e-05 Score=49.30 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-----HHHHHHHHCEEECC-CCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCC
Q ss_conf 977786059999999887488989-----78853230000002-78887565311120203775210-011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-----LEESLEVSMIYSIS-GHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~le~~~i~s~~-g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~ 73 (186)
|.||.|||||++||-|+.-|.=.. ..-.|+.+. ++. |.... ..++ ...-.-|..+. ...+. ....+.
T Consensus 42 FsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~--~i~~g~~~~-~Dvi--EiDAAS~~gVddiReL~-e~~~y~ 115 (775)
T PRK07764 42 FSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCV--ALAPGGPGS-LDVV--EIDAASHGGVDDARELR-ERAFFA 115 (775)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHCCCCCC-CCEE--EECCCCCCCHHHHHHHH-HHCCCC
T ss_conf 23788878889999999996689999989888876378--886389888-8668--73156556889999999-854768
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 2799827998899803878598899999999971952
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
| +.+.+-|..|||...++....|+||.-||+=--
T Consensus 116 P---~~~ryKVyIIDEaHmls~~afNALLKtLEEPP~ 149 (775)
T PRK07764 116 P---AQSRYRIFIIDEAHMVTTAGFNALLKIVEEPPE 149 (775)
T ss_pred C---CCCCEEEEEEECHHHHCHHHHHHHHHHHCCCCC
T ss_conf 7---678635999853544079999999886227864
No 129
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=4.1e-05 Score=50.79 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=25.3
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 9889980387859889999999997195
Q gi|254781026|r 82 NGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 82 ~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
.-|..|||...++.+..|+||.-||+=-
T Consensus 142 ~kv~Iid~ad~m~~~aaNALLK~LEEPp 169 (352)
T PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPP 169 (352)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHCCC
T ss_conf 0699981878746999999999853489
No 130
>PHA01747 putative ATP-dependent protease
Probab=97.60 E-value=5.7e-05 Score=49.96 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=81.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCCC
Q ss_conf 77860599999998874889897885323000000278887565311120203775210011023434568279982799
Q gi|254781026|r 3 GPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAHN 82 (186)
Q Consensus 3 GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh~ 82 (186)
-.||||||+.+-.+..++. ++ ....+ .+-+-++.....-.-|.+.+.+|
T Consensus 197 SnrgTGKTTtf~ilqe~~n------------f~-----------Y~tEp--------Ptya~LvyDAktn~~G~Vf~s~G 245 (425)
T PHA01747 197 SNRGTGKTTTFVILQELFN------------FR-----------YYTEP--------PTYANLVYDAKTNALGLVFLSNG 245 (425)
T ss_pred CCCCCCCEEHHHHHHHHHC------------CE-----------ECCCC--------CCHHHHHHHCCCCCEEEEEECCC
T ss_conf 3689883221789999856------------45-----------20589--------62777764312351015773386
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHCCCEEE--HHCCE-E---EEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 889980387859889999999997195230--10030-7---89847015675227465887889887643899999999
Q gi|254781026|r 83 GVLFLDEIPEFSPQTLNALRQPLETGECII--ARANR-K---ISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEY 156 (186)
Q Consensus 83 GVLflDE~~e~~~~~l~~L~~~le~g~v~i--~R~g~-~---~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y 156 (186)
|++||+..|+++-+.++...|..|.-.- .|+-. . .+..-..-++=|.||-- -.-.-.-++.-+++|
T Consensus 246 --lifDEIqtwkds~~~aI~s~l~TGmenc~WtR~agtesda~tI~rcIPIifaGN~~s------~tld~y~tp~~i~~y 317 (425)
T PHA01747 246 --LIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDS------STLDTYQTPNYIKNY 317 (425)
T ss_pred --EEEEHHHHCCCCHHHHHHHHHHHCCHHEEEECCCCCCCCCCHHHHCEEEEECCCCCC------EEEEEECCCCHHHHH
T ss_conf --587544432664088999998611011165247677766502231202898579874------000200384079999
Q ss_pred HHH------CCHHHHHCCCEE-EECCCCCHHH
Q ss_conf 851------224321004259-9838856688
Q gi|254781026|r 157 QAR------ISGPLMDRIDIR-IAVPSRTHIR 181 (186)
Q Consensus 157 ~~r------ls~plldR~Dl~-v~~~~~~~~~ 181 (186)
+.+ +..++||||.|+ +.-.-+++.+
T Consensus 318 L~~~e~f~~~t~AiLDRiaii~~~~kk~tyd~ 349 (425)
T PHA01747 318 LVSYELFQSLTKAILDRIAIIIVNEKKITYDD 349 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999887677999988999986125565767
No 131
>KOG0652 consensus
Probab=97.59 E-value=9.7e-05 Score=48.58 Aligned_cols=97 Identities=23% Similarity=0.422 Sum_probs=57.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+||||+|||++||+-++--. +.+-..+| .-.....+|.|..+.--+.++|
T Consensus 210 mYGPPGTGKTlmARAcAaqT~----------aTFLKLAg-------------------PQLVQMfIGdGAkLVRDAFaLA 260 (424)
T KOG0652 210 MYGPPGTGKTLMARACAAQTN----------ATFLKLAG-------------------PQLVQMFIGDGAKLVRDAFALA 260 (424)
T ss_pred EECCCCCCHHHHHHHHHHHCC----------CHHHHHCC-------------------HHHHHHHHCCHHHHHHHHHHHH
T ss_conf 657999757799999987401----------06887326-------------------4777665334188999999875
Q ss_pred C---CCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 9---988998038785-----------98899999999971952301003078984701567522746
Q gi|254781026|r 81 H---NGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 81 h---~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
. --|.||||++-. ++.++..+++-|.+=- |.+ -..+.-+|||+|-.
T Consensus 261 KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD------GFs--s~~~vKviAATNRv 320 (424)
T KOG0652 261 KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD------GFS--SDDRVKVIAATNRV 320 (424)
T ss_pred HCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC------CCC--CCCCEEEEEECCCC
T ss_conf 3349838997300232334365312343899999999998604------899--75626788521643
No 132
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=6.8e-05 Score=49.48 Aligned_cols=98 Identities=22% Similarity=0.312 Sum_probs=51.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHH--H---HHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCH
Q ss_conf 977786059999999887488989788--5---323000000278887565311120203775210-0110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEE--S---LEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e--~---le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~p 74 (186)
|.||+|+|||++|+.++..|--.+..+ . |+.+. ....|... .+..... +...... .+.+. ......|
T Consensus 43 FsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~-~I~~g~h~---DviEIda--asn~gIDeIReLi-e~~~~~P 115 (613)
T PRK05896 43 FSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE-SINTNQSV---DIVELDA--ASNNGVDEIRNII-DNINYLP 115 (613)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCCC---CEEEEEC--CCCCCHHHHHHHH-HHHCCCC
T ss_conf 55899848899999999996699999999888887899-98569999---8688406--5557889999999-9708587
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 7998279988998038785988999999999719
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
+.+..-|..|||+..++....++||--||+=
T Consensus 116 ---~~gkyKV~IIDEah~Ln~~AaNALLKtLEEP 146 (613)
T PRK05896 116 ---TTFKYKVYIIDEAHMLSTSAWNALLKTLEEP 146 (613)
T ss_pred ---CCCCCEEEEECCHHHCCHHHHHHHHHHCCCC
T ss_conf ---5799459998162217999999999853489
No 133
>KOG0739 consensus
Probab=97.58 E-value=7.8e-05 Score=49.15 Aligned_cols=18 Identities=44% Similarity=0.850 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 977786059999999887
Q gi|254781026|r 1 MIGPPGARKSMLASCLPS 18 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~ 18 (186)
|.||||+|||.||++++.
T Consensus 171 LyGPPGTGKSYLAKAVAT 188 (439)
T KOG0739 171 LYGPPGTGKSYLAKAVAT 188 (439)
T ss_pred EECCCCCCHHHHHHHHHH
T ss_conf 867999757799999874
No 134
>TIGR02688 TIGR02688 conserved hypothetical protein TIGR02688; InterPro: IPR014061 Members of this entry are uncharacterised proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families IPR004815 from INTERPRO (ATP-dependent protease La) or IPR003111 from INTERPRO (ATP-dependent protease La (LON) domain). The proteins in this entry are encoded by genes repeatedly found downstream of another gene that encodes an uncharacterised protein of about 880 amino acids in length (see IPR014060 from INTERPRO)..
Probab=97.55 E-value=0.00013 Score=47.90 Aligned_cols=128 Identities=21% Similarity=0.244 Sum_probs=87.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCC
Q ss_conf 77786059999999887488989788532300000027888756531112020377521001102343456827998279
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAH 81 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh 81 (186)
+||.|||||-+=+-+ ++ .-.-..+..+|.+.|+-+-..-++|+|++-+
T Consensus 223 LgPk~TGKSY~Y~n~------------------------Sp--------~~~liSGG~~T~A~LFyN~~t~~~Glv~~~D 270 (470)
T TIGR02688 223 LGPKGTGKSYIYENL------------------------SP--------YVILISGGEITVAKLFYNISTRKIGLVGLWD 270 (470)
T ss_pred ECCCCCCCCHHEECC------------------------CC--------CEEEEECCCCCCCCCEEECCCCCCCEEEEEE
T ss_conf 578887730010067------------------------87--------7799838820533002475688643343133
Q ss_pred CCEEEEECHHH----CCHHHHHHHHHHHHCCCEEEHHC-CEEEEECCCEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 98899803878----59889999999997195230100-30789847015675--2274658878898876438999999
Q gi|254781026|r 82 NGVLFLDEIPE----FSPQTLNALRQPLETGECIIARA-NRKISYPSRIQLIA--AMNPCRCGMSNKDENVCIRGPRCAT 154 (186)
Q Consensus 82 ~GVLflDE~~e----~~~~~l~~L~~~le~g~v~i~R~-g~~~~~Pa~f~Lva--a~NPcpcG~~~~~~~~c~c~~~~~~ 154 (186)
+.-+||+.. -++.++..|-.=||+| +.+|+ -....=.|-|.|+| ..|-.-........-.|. -|...+
T Consensus 271 --~VafDEv~~~~~~~~~e~~~~LK~Y~e~G--~f~RGG~~~~~s~AS~v~~GNVn~~~~~E~~~~~~~Lf~~-LPe~~r 345 (470)
T TIGR02688 271 --VVAFDEVATLKFEKPKELIGILKDYLESG--SFTRGGDETLSSDASFVFLGNVNVNLTSESMVKQSDLFSP-LPEFMR 345 (470)
T ss_pred --EEEECCHHCCCCCCCHHHHHHHHHHHHCC--CCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf --56550210100168067887755564257--6301563110113237766314688887874666664303-872200
Q ss_pred HHHHHCCHHHHHCCCEE
Q ss_conf 99851224321004259
Q gi|254781026|r 155 EYQARISGPLMDRIDIR 171 (186)
Q Consensus 155 ~Y~~rls~plldR~Dl~ 171 (186)
--.|+||||.=.
T Consensus 346 -----~DsAFLDRiHgy 357 (470)
T TIGR02688 346 -----EDSAFLDRIHGY 357 (470)
T ss_pred -----CCHHHHHHHHHC
T ss_conf -----001478677403
No 135
>KOG0735 consensus
Probab=97.54 E-value=0.00035 Score=45.32 Aligned_cols=94 Identities=28% Similarity=0.396 Sum_probs=51.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH---
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799---
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED--- 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i--- 77 (186)
|.||||||||.||.++++--+ -.+-|+.|- .+ ..-.+|..-.-.--..
T Consensus 706 LyGppGcGKT~la~a~a~~~~----------~~fisvKGP-----El--------------L~KyIGaSEq~vR~lF~rA 756 (952)
T KOG0735 706 LYGPPGCGKTLLASAIASNSN----------LRFISVKGP-----EL--------------LSKYIGASEQNVRDLFERA 756 (952)
T ss_pred EECCCCCCHHHHHHHHHHHCC----------EEEEEECCH-----HH--------------HHHHHCCCHHHHHHHHHHH
T ss_conf 877999857888888885378----------059982588-----99--------------9987450078899999986
Q ss_pred HHCCCCEEEEECHHHCC-----------HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 82799889980387859-----------889999999997195230100307898470156752274
Q gi|254781026|r 78 SLAHNGVLFLDEIPEFS-----------PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 78 ~lAh~GVLflDE~~e~~-----------~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
.-|--.|||+|||+-.. +.+.++|+.-|. |.- -+-.-+++-||+.|
T Consensus 757 ~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelD-G~E---------gl~GV~i~aaTsRp 813 (952)
T KOG0735 757 QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELD-GAE---------GLDGVYILAATSRP 813 (952)
T ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCC---------CCCEEEEEEECCCC
T ss_conf 5149748971210243766687777742999999987603-633---------44538999733783
No 136
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=8.6e-05 Score=48.89 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=50.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHH-----HHHHHCEEECCCCCCCCCCCCCCCEEECC-CC-CCCHHHCCCCCCCCC
Q ss_conf 977786059999999887488989788-----53230000002788875653111202037-75-210011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEE-----SLEVSMIYSISGHSSHEYSFIQNRPFRSP-HH-SVTIAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e-----~le~~~i~s~~g~~~~~~~~~~~~p~~~~-~~-~~~~~~l~gg~~~~~ 73 (186)
|.|+.|||||++||-++.-|.=.+... .|+.+. .-..|.. . .++ .+-.- +. ....+.+... ....
T Consensus 43 f~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~-~i~~g~~--~-d~~---EiDaAs~~~vdd~rel~~~-~~y~ 114 (717)
T PRK08853 43 FSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCK-EIDEGRF--V-DLL---EIDAASRTKVEDTRELLDN-VQYK 114 (717)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH-HHHCCCC--C-CEE---EECCCCCCCHHHHHHHHHH-CCCC
T ss_conf 10889888989999999986789999999788870267-6744787--7-524---5405656788999999985-5548
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 27998279988998038785988999999999719
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
| +....-|.+|||+.-++++..|+||.-||+-
T Consensus 115 p---~~~~yKvyiiDEvHmls~~afnAlLKtlEEP 146 (717)
T PRK08853 115 P---ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 146 (717)
T ss_pred C---CCCCEEEEEEECHHHCCHHHHHHHHHHHCCC
T ss_conf 8---7785479998305443899999998760378
No 137
>PRK06526 transposase; Provisional
Probab=97.53 E-value=5.3e-05 Score=50.11 Aligned_cols=118 Identities=24% Similarity=0.238 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCHHHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210-011023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~pG~i~l 79 (186)
++||||||||.||-++.-- ++.. -+++ .+ ++.+..... ..+-..|...-.-. .+
T Consensus 103 l~G~~GtGKThLA~Alg~~--------A~~~--G~~v--------~f-----~~~~~L~~~L~~a~~~g~~~~~~~--~l 157 (254)
T PRK06526 103 FLGPPGTGKTHLAIGLGIR--------ACQA--GHRV--------LF-----ATAAQWVARLAAAHHAGRLQDELV--KL 157 (254)
T ss_pred EECCCCCCHHHHHHHHHHH--------HHHC--CCCE--------EE-----EEHHHHHHHHHHHHHCCCHHHHHH--HH
T ss_conf 9899998689999999999--------9986--9967--------99-----877999999999885580999999--85
Q ss_pred CCCCEEEEECHHH--CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7998899803878--59889999999997195230100307898470156752274658878898876438999999998
Q gi|254781026|r 80 AHNGVLFLDEIPE--FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ 157 (186)
Q Consensus 80 Ah~GVLflDE~~e--~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~ 157 (186)
+.--+|.|||+.- +++...+.|.|.+++..- |. .+|-|+|-.+..|..--..
T Consensus 158 ~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye---~~----------S~IiTSn~~~~~W~~~f~D------------- 211 (254)
T PRK06526 158 GRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYE---RA----------SLIVTSNKPFGRWGEVFGD------------- 211 (254)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC---CC----------CEEEECCCCHHHHHHHCCC-------------
T ss_conf 136877650213644788999999999999974---58----------8676658986688886486-------------
Q ss_pred HHCCHHHHHCCC
Q ss_conf 512243210042
Q gi|254781026|r 158 ARISGPLMDRID 169 (186)
Q Consensus 158 ~rls~plldR~D 169 (186)
..+..++|||+=
T Consensus 212 ~~la~AilDRL~ 223 (254)
T PRK06526 212 DVVAAAMIDRLV 223 (254)
T ss_pred HHHHHHHHHHHC
T ss_conf 899999999862
No 138
>PRK08181 transposase; Validated
Probab=97.51 E-value=5.4e-05 Score=50.09 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=63.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCHHHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210-011023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~pG~i~l 79 (186)
|+||||||||.||-++.-- ++.. |. ...++ +....... ..+-..|. ..--.-.+
T Consensus 111 l~Gp~GtGKThLA~Alg~~--------A~~~-------G~---~V~f~-----~~~~L~~~L~~a~~~~~--~~~~~~~l 165 (269)
T PRK08181 111 LFGPPGGGKSHLAAAIGLA--------LIEN-------GW---RVLFT-----RTTDLVQKLQVARRELQ--LESAIAKL 165 (269)
T ss_pred EECCCCCCHHHHHHHHHHH--------HHHC-------CC---EEEEE-----EHHHHHHHHHHHHHCCC--HHHHHHHH
T ss_conf 9899998788999999999--------9987-------99---39997-----89999999999775583--99999997
Q ss_pred CCCCEEEEECHHH--CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7998899803878--59889999999997195230100307898470156752274658878898876438999999998
Q gi|254781026|r 80 AHNGVLFLDEIPE--FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ 157 (186)
Q Consensus 80 Ah~GVLflDE~~e--~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~ 157 (186)
+.--+|.|||++- +++...+.|.|.+++..- | -.+|-|+|-.+..|..-...
T Consensus 166 ~~~dLLIiDe~G~~~~~~~~~~~lf~lI~~Rye---~----------~S~IITSn~~~~~W~~~f~D------------- 219 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYE---R----------RSILITANQPFGEWNRVFPD------------- 219 (269)
T ss_pred HCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHC---C----------CCEEEECCCCHHHHHHHCCC-------------
T ss_conf 444601220105667998999999999999857---8----------88899889997788775386-------------
Q ss_pred HHCCHHHHHCCC
Q ss_conf 512243210042
Q gi|254781026|r 158 ARISGPLMDRID 169 (186)
Q Consensus 158 ~rls~plldR~D 169 (186)
..+..++|||+=
T Consensus 220 ~~la~AiLDRLv 231 (269)
T PRK08181 220 PAMTLAAVDRLV 231 (269)
T ss_pred HHHHHHHHHHHH
T ss_conf 889999999870
No 139
>PRK04195 replication factor C large subunit; Provisional
Probab=97.49 E-value=0.00016 Score=47.25 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|.||||||||++|+.++.-+- -+.+|..+ | ..+....+ +.+. ........+.| .
T Consensus 45 L~GPpGvGKTT~a~~lAk~~g----~~viElNA--S---D~R~~~~I---~~~i--~~~~~~~sl~~------------~ 98 (403)
T PRK04195 45 LYGPPGVGKTSLAHALANDYG----WEVIELNA--S---DQRTKDVI---ERVA--GEASTSGSLFG------------A 98 (403)
T ss_pred EECCCCCCHHHHHHHHHHHHC----CCEEEECC--C---CCCCHHHH---HHHH--HHHHHCCCCCC------------C
T ss_conf 889399879999999999849----98599771--0---11478999---9999--98760688778------------8
Q ss_pred CCCEEEEECHHHCCH----HHHHHHHHHHHCC
Q ss_conf 998899803878598----8999999999719
Q gi|254781026|r 81 HNGVLFLDEIPEFSP----QTLNALRQPLETG 108 (186)
Q Consensus 81 h~GVLflDE~~e~~~----~~l~~L~~~le~g 108 (186)
.+-+++|||++-++. ..+..|++.+++-
T Consensus 99 ~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s 130 (403)
T PRK04195 99 KRKLILLDEVDGIHGNADRGGVRAILEIIKKA 130 (403)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 73499963434457244479999999998548
No 140
>PRK09183 transposase/IS protein; Provisional
Probab=97.45 E-value=6.6e-05 Score=49.55 Aligned_cols=126 Identities=19% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCHHHHH-
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210-01102343456827998-
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLPGEDS- 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~pG~i~- 78 (186)
|+||||||||.||-++.-- ++.. |. ...++ +.+..... ..+-..| -....+.
T Consensus 106 l~G~~GtGKThLA~Alg~~--------A~~~-------G~---~v~f~-----~~~~L~~~L~~a~~~~---~~~~~l~r 159 (258)
T PRK09183 106 LLGPSGVGKTHLAIALGYE--------AVRA-------GI---KVRFT-----TAADLLLQLSTAQRQG---RYKTTLQR 159 (258)
T ss_pred EECCCCCCHHHHHHHHHHH--------HHHC-------CC---EEEEE-----EHHHHHHHHHHHHHCC---CHHHHHHH
T ss_conf 9899998689999999999--------9987-------99---39997-----8999999999998768---59999998
Q ss_pred -HCCCCEEEEECHH--HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -2799889980387--8598899999999971952301003078984701567522746588788988764389999999
Q gi|254781026|r 79 -LAHNGVLFLDEIP--EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATE 155 (186)
Q Consensus 79 -lAh~GVLflDE~~--e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~ 155 (186)
++---+|.|||++ .+++...+.|.|.+++..- | -.+|-|+|-.+..|..-....
T Consensus 160 ~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye---~----------~S~IiTSn~~~~~W~~~f~~D---------- 216 (258)
T PRK09183 160 GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYE---K----------GAMILTSNLPFGQWDQTFAGD---------- 216 (258)
T ss_pred HHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHC---C----------CCEEEECCCCHHHHHHHCCCC----------
T ss_conf 74346514431331546888899999999999857---6----------778998899978985651686----------
Q ss_pred HHHHCCHHHHHCCC---EEEECCCC
Q ss_conf 98512243210042---59983885
Q gi|254781026|r 156 YQARISGPLMDRID---IRIAVPSR 177 (186)
Q Consensus 156 Y~~rls~plldR~D---l~v~~~~~ 177 (186)
..+..++|||+= -+|.+..-
T Consensus 217 --~~la~AilDRL~H~a~~i~l~Ge 239 (258)
T PRK09183 217 --AALTSAMLDRLLHHSHVVQIKGE 239 (258)
T ss_pred --HHHHHHHHHHHCCCEEEEEECCC
T ss_conf --99999999986046179974587
No 141
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0001 Score=48.47 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=50.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC-----CHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 97778605999999988748898-----9788532300000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL-----SLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l-----~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
|.||+|+|||++||.++.-|-=. .....|..+. ....|... + ++.... .+-........+.. .....|
T Consensus 41 FsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~-~i~~g~hp-D--ViEiDa-asn~gID~IReLie-~~~~~P- 113 (523)
T PRK08451 41 FSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQ-AALEGRHI-D--IIEMDA-ASNRGIDDIRNLIE-QTKYKP- 113 (523)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCCC-C--EEEECC-CCCCCHHHHHHHHH-HHCCCC-
T ss_conf 57899868899999999997599999989888788899-98648999-8--551055-33368999999999-723588-
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 998279988998038785988999999999719
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
+.+..-|..|||...++....++||.-||+=
T Consensus 114 --~~gryKV~IIDEah~Lt~~A~NALLKTLEEP 144 (523)
T PRK08451 114 --SMARFKIFIIDEVHMLTKEAFNALLKTLEEP 144 (523)
T ss_pred --CCCCEEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf --6797279998260304899999999970389
No 142
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.00018 Score=46.96 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-----HHHHHHHHCEEECCCCCCCCCCCCCCCEEECC-CCC-CCHHHCCCCCCCCC
Q ss_conf 977786059999999887488989-----78853230000002788875653111202037-752-10011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-----LEESLEVSMIYSISGHSSHEYSFIQNRPFRSP-HHS-VTIAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~-~~~-~~~~~l~gg~~~~~ 73 (186)
|.|+.|||||++||-++.-|.=.+ ..-.|+.|. .-..|.. .+ ++ .+-.- ... ...+.+... ....
T Consensus 43 f~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~-~i~~g~~-~d--~i---EiDaAS~~~vd~~r~l~~~-~~y~ 114 (816)
T PRK07003 43 FTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR-EIDEGRF-VD--YV---EMDAASNRGVDEMAALLER-AVYA 114 (816)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCC-CC--EE---EEECCCCCCHHHHHHHHHH-CCCC
T ss_conf 11789888889999999986789999989787755578-7755887-75--47---8635543576899999986-2247
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf 279982799889980387859889999999997195230
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECII 112 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i 112 (186)
| +....-|.+|||+.-++++..|+||.-||+=--++
T Consensus 115 p---~~~r~KvyiiDEvHmls~~afnalLKtlEepP~hv 150 (816)
T PRK07003 115 P---VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (816)
T ss_pred C---CCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCE
T ss_conf 8---66744799984154339999999998403798664
No 143
>KOG0740 consensus
Probab=97.39 E-value=0.0001 Score=48.41 Aligned_cols=19 Identities=42% Similarity=0.871 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9777860599999998874
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSI 19 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~i 19 (186)
|.||||+|||||++++++=
T Consensus 191 LfGPpgtGKtmL~~aiAsE 209 (428)
T KOG0740 191 LFGPPGTGKTMLAKAIATE 209 (428)
T ss_pred EECCCCCCHHHHHHHHHHH
T ss_conf 0058988447999999862
No 144
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.00023 Score=46.43 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=59.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH-----HHHHHHHCEEECCCCCCCCCCCCCCCEEEC-CCC-CCCHHHCCCCCCCCC
Q ss_conf 9777860599999998874889897-----885323000000278887565311120203-775-210011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL-----EESLEVSMIYSISGHSSHEYSFIQNRPFRS-PHH-SVTIAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~-----~e~le~~~i~s~~g~~~~~~~~~~~~p~~~-~~~-~~~~~~l~gg~~~~~ 73 (186)
|.|+.|||||++||-++.-|.=-+. .-.|+.+. .-..|. ..+ ++ .+-. -+. ....+.+..+ ....
T Consensus 43 f~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~-~i~~g~--~~d-~~---eidaas~~~v~~~r~l~~~-~~~~ 114 (696)
T PRK06872 43 FSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCK-AIEEGN--FID-LI---EIDAASRTKVEDTRELLDN-VQYK 114 (696)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCC--CCC-EE---EEECCCCCCHHHHHHHHHH-CCCC
T ss_conf 11789888889999999986789999999788862257-674478--775-46---7505655788999999984-5457
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 2799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
| +..+.-|..|||+.-++++..|+|+.-||+=--++ .| ++||+.|-
T Consensus 115 p---~~~~~kvy~idevhmls~~~fnallktleepp~~v-----------~f-~latt~~~ 160 (696)
T PRK06872 115 P---VVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYV-----------KF-LLATTDPQ 160 (696)
T ss_pred C---CCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCCE-----------EE-EEECCCHH
T ss_conf 7---67754799970054438999999987502797544-----------89-98438632
No 145
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=97.36 E-value=0.00025 Score=46.13 Aligned_cols=111 Identities=21% Similarity=0.245 Sum_probs=58.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH-----HHHHHHHCEEECCCCCCCCCCCCCCCEEEC-CC-CCCCHHHCCCCCCCCC
Q ss_conf 9777860599999998874889897-----885323000000278887565311120203-77-5210011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL-----EESLEVSMIYSISGHSSHEYSFIQNRPFRS-PH-HSVTIAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~-----~e~le~~~i~s~~g~~~~~~~~~~~~p~~~-~~-~~~~~~~l~gg~~~~~ 73 (186)
|.|+.|||||++||-|+.-|.--+. .-.|+.+. .-..|.. .+ ++ .+-. -. .....+.+... ....
T Consensus 43 ~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~-~i~~~~~--~d-~~---e~d~as~~~v~~~r~~~~~-~~~~ 114 (705)
T PRK05648 43 FTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCR-EIDEGRF--VD-LI---EVDAASRTKVEDTRELLDN-VQYA 114 (705)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCC--CC-EE---EECCCCCCCHHHHHHHHHH-CCCC
T ss_conf 00789888989999999986778999889787760046-6624897--76-34---4515544788999999985-5517
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 2799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
| +.+..-|..|||+.-++++..|+|+.-||+=--++ .| ++||+.|-
T Consensus 115 p---~~~~~kv~~idevhmls~~~fnallktleepp~~v-----------~f-~~att~~~ 160 (705)
T PRK05648 115 P---TRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHV-----------KF-LLATTDPQ 160 (705)
T ss_pred C---CCCCEEEEEEEHHHHCCHHHHHHHHHHCCCCCCCE-----------EE-EEECCCHH
T ss_conf 7---67745799984265417999999987404797545-----------99-98428735
No 146
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.00021 Score=46.67 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHH----HHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHC--CCCCCCCCH
Q ss_conf 97778605999999988748898978----853230000002788875653111202037752100110--234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLE----ESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAAL--IGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~----e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l--~gg~~~~~p 74 (186)
|.||+|+||+++|+.++..|.=.+.. ..|..+. .-..|..+. ...+ .| -..+.....+ .-.....+|
T Consensus 44 F~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~-~i~~g~hpD-v~~i--~p---~~~~i~id~iR~l~~~~~~~p 116 (395)
T PRK07940 44 FTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACR-TVLAGTHPD-VRVV--VP---EGLSIGVDEVREIVQIAARRP 116 (395)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHCCCCCC-EEEE--EC---CCCCCCHHHHHHHHHHHHHCC
T ss_conf 3689987889999999999669999999998787899-987689987-1898--26---877688999999999985273
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 799827998899803878598899999999971952
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
..+..-|..|||...++....|+|+.-+|+---
T Consensus 117 ---~~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp~ 149 (395)
T PRK07940 117 ---TTGRWRIVVIEDADRLTERAANALLKAVEEPPP 149 (395)
T ss_pred ---CCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCC
T ss_conf ---037955999807787489999999985217888
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.00035 Score=45.32 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=51.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH---HHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCHHH
Q ss_conf 9777860599999998874889897---885323000000278887565311120203775210-011023434568279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL---EESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLPGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~---~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~pG~ 76 (186)
+.||.|||||++||.+|.-|-=... .+.|..+. +..+. ...++.. ..+-+.++. .+.+. -.....|
T Consensus 45 F~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~--~~~~~---s~DViEI--DAASn~gVDdIReLi-e~v~y~P-- 114 (718)
T PRK07133 45 FSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCI--ENFNN---NLDIIEM--DAASNNGVDEIRELR-ENVKNLP-- 114 (718)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH--HCCCC---CCCEEEE--CCCCCCCHHHHHHHH-HHHCCCC--
T ss_conf 238998688999999999967999999999770214--30478---9873775--455668889999999-9825588--
Q ss_pred HHHCCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 98279988998038785988999999999719
Q gi|254781026|r 77 DSLAHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 77 i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
+.+..-|..|||+..++....++|+--||+-
T Consensus 115 -~~gkYKVyIIDEvHMLS~~AfNALLKtLEEP 145 (718)
T PRK07133 115 -QISKYKIYIIDEVHMLSKSAFNALLKTLEEP 145 (718)
T ss_pred -CCCCEEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf -7787249999662007999999999850279
No 148
>PRK04132 replication factor C small subunit; Provisional
Probab=97.30 E-value=0.00014 Score=47.69 Aligned_cols=86 Identities=22% Similarity=0.224 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 977786059999999887488989-7885323000000278887565311120203775210011023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l 79 (186)
+.||||||||+.|-+|+.=|=-=+ .+..+|..+-.+ .+... ......-++.. ..+.-
T Consensus 51 FaGPPGvGKt~~al~lar~l~ge~wr~nflelnas~~------~~~~~-----------~~~~v~~~~~~-----~p~~~ 108 (863)
T PRK04132 51 FAGPPGVGKTTAALALARELFGENWRHNFLELNASDE------RGINV-----------IREKVKEFART-----KPIGG 108 (863)
T ss_pred ECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCC------CCCHH-----------HHHHHHHCCCC-----CCCCC
T ss_conf 0489987714478888887614314555664144212------36348-----------88877750686-----64578
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 79988998038785988999999999719
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
|.-.++|+||.+.+..++...+|.-||.-
T Consensus 109 ~~~k~~~~de~~~l~~d~~~~~r~~~e~~ 137 (863)
T PRK04132 109 ASFKIIFLDEADALTQDAQQALRRTMEMF 137 (863)
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 65424644365640101157787667774
No 149
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=97.29 E-value=0.00032 Score=45.55 Aligned_cols=104 Identities=20% Similarity=0.189 Sum_probs=54.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|.|+.|+|||||...+-+-+|.-. + .++|. +.-+...|.. ...+-|+..++.+=+-.+|
T Consensus 66 l~G~VGrGKTmLMDlFy~~lp~~~-K-----~R~HF-------------h~FM~~vH~~--l~~~~~~~dpl~~va~~l~ 124 (361)
T pfam03969 66 LWGGVGRGKTHLMDSFFESLPGER-K-----RRTHF-------------HRFMFRVHDE--LTTLQGGDDPLPIAADRFA 124 (361)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCC-C-----CCCCH-------------HHHHHHHHHH--HHHHHCCCCCHHHHHHHHH
T ss_conf 889988869999999998677534-4-----45667-------------8999999999--9997667763899999997
Q ss_pred CC-CEEEEECHHHC---CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 99-88998038785---98899999999971952301003078984701567522746588788
Q gi|254781026|r 81 HN-GVLFLDEIPEF---SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSN 140 (186)
Q Consensus 81 h~-GVLflDE~~e~---~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~ 140 (186)
.. -|||+|||--- +.-++.-|++.|-+.- ..||+|+|-.|..-|.
T Consensus 125 ~~~~lLCfDEFqV~DIaDAMIL~rLf~~Lf~~g---------------vvlV~TSN~~P~~LY~ 173 (361)
T pfam03969 125 NEARLLCFDEFEVDDIGDAMILGRLFEALFARG---------------VSLVATSNTAPEQLYR 173 (361)
T ss_pred HCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCC---------------CEEEEECCCCHHHHHC
T ss_conf 258779976356167888999999999999779---------------7899808999899836
No 150
>KOG0736 consensus
Probab=97.27 E-value=9.8e-05 Score=48.56 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=61.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC--HHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568--27998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL--PGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~--pG~i~ 78 (186)
|.||||||||.+||+++.=.- -.+-|+.| ..+++. .++..+-..+ =-.-.
T Consensus 710 LYGPPGTGKTLlAKAVATEcs----------L~FlSVKG-----PELLNM-------------YVGqSE~NVR~VFerAR 761 (953)
T KOG0736 710 LYGPPGTGKTLLAKAVATECS----------LNFLSVKG-----PELLNM-------------YVGQSEENVREVFERAR 761 (953)
T ss_pred EECCCCCCHHHHHHHHHHHCE----------EEEEEECC-----HHHHHH-------------HHCCHHHHHHHHHHHHH
T ss_conf 877999855799999875430----------36785058-----899887-------------74301888999999854
Q ss_pred HCCCCEEEEECHHHCCH-------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 27998899803878598-------------89999999997195230100307898470156752274658878898876
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSP-------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENV 145 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~-------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~ 145 (186)
.|---|+|+||++-+.| .++.+|+--|. | .+..--...-+|||+|- | .+
T Consensus 762 ~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD-g--------ls~~~s~~VFViGATNR-P--DL------ 823 (953)
T KOG0736 762 SAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD-G--------LSDSSSQDVFVIGATNR-P--DL------ 823 (953)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-C--------CCCCCCCCEEEEECCCC-C--CC------
T ss_conf 46974998312123275678878865408999999999862-6--------66788886599825888-5--54------
Q ss_pred CCCCHHHHHHHHHHCCHHHH--HCCCEEEECCCCCHH
Q ss_conf 43899999999851224321--004259983885668
Q gi|254781026|r 146 CIRGPRCATEYQARISGPLM--DRIDIRIAVPSRTHI 180 (186)
Q Consensus 146 c~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~~~~ 180 (186)
|-.+|| -|||=-|.|..-.+.
T Consensus 824 --------------LDpALLRPGRFDKLvyvG~~~d~ 846 (953)
T KOG0736 824 --------------LDPALLRPGRFDKLVYVGPNEDA 846 (953)
T ss_pred --------------CCHHHCCCCCCCEEEEECCCCCH
T ss_conf --------------57655388765524885588567
No 151
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=97.27 E-value=0.00012 Score=48.08 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=47.9
Q ss_pred CCCCEEEEECHHHCCHHH-------------HHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEE--CCCCCCCCCCCCCC
Q ss_conf 799889980387859889-------------999999997195230100307898470156752--27465887889887
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQT-------------LNALRQPLETGECIIARANRKISYPSRIQLIAA--MNPCRCGMSNKDEN 144 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~-------------l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa--~NPcpcG~~~~~~~ 144 (186)
=+.||.||||+++.-.+- +-=|| |+=+|....+|.|.+-| .+.++||| .|-. .|.+
T Consensus 267 E~~GiiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlL-PiVEGS~V~TKyG~VkT--dHiLFIAaGAF~lA-----KPSD- 337 (463)
T TIGR00390 267 EQSGIIFIDEIDKIAKKGKESSGADVSREGVQRDLL-PIVEGSTVNTKYGSVKT--DHILFIAAGAFHLA-----KPSD- 337 (463)
T ss_pred HHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEECCEEEC--CHHHHHHHHHHCCC-----CCCC-
T ss_conf 847828985303542168886788876556510114-20226664310010422--15787675232027-----7766-
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 6438999999998512243210042599838856688
Q gi|254781026|r 145 VCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 145 ~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
|-.=|-=||-|+|.+..+|..+
T Consensus 338 ---------------LIPELQGRfPirVEL~~Lt~~d 359 (463)
T TIGR00390 338 ---------------LIPELQGRFPIRVELEALTVDD 359 (463)
T ss_pred ---------------CCCHHHCCCCHHHHHHHHHHHH
T ss_conf ---------------6631106673778767632999
No 152
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.26 E-value=0.00034 Score=45.41 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=53.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-----HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC-CCHHHCCCCCCCCCH
Q ss_conf 977786059999999887488989-----78853230000002788875653111202037752-100110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-----LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS-VTIAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~-~~~~~l~gg~~~~~p 74 (186)
|.|+.|||||++||-++.-|.=.+ ..-.|+.+. .-..|... + ++.. ...-... ...+.+.. .....|
T Consensus 43 f~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~-~i~~g~~~-D--~~Ei--DaAs~~~vdd~R~l~~-~~~y~P 115 (704)
T PRK08691 43 LTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT-QIDAGRYV-D--LLEI--DAASNTGIDNIREVLE-NAQYAP 115 (704)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCCC-C--EEEE--ECCCCCCHHHHHHHHH-HCCCCC
T ss_conf 02789878889999999996799999999787777678-78558998-7--4774--2454458899999998-534688
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 799827998899803878598899999999971952
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
+....-|..|||+.-++++..|+|+.-||+==-
T Consensus 116 ---~~~~yKVyiiDEvhmLs~~afNAlLKtLEEPP~ 148 (704)
T PRK08691 116 ---TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (704)
T ss_pred ---CCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCC
T ss_conf ---678535999831544389999999986147975
No 153
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=97.25 E-value=0.00089 Score=42.94 Aligned_cols=109 Identities=26% Similarity=0.286 Sum_probs=57.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC----CHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCC-CCCCCCCH
Q ss_conf 97778605999999988748898----97885323000000278887565311120203775210-01102-34345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL----SLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALI-GGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l----~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~-gg~~~~~p 74 (186)
|.||.|||||+.||=||.-|.=. ++...|+.+. .-..|.... .-.+- .+-+.++- .+.+. .-...|-.
T Consensus 41 F~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~-~i~~g~~~D-viEiD----AASN~gVD~IR~l~e~v~y~P~~ 114 (363)
T TIGR02397 41 FSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCK-EINSGSSLD-VIEID----AASNNGVDDIRELRENVKYAPSK 114 (363)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHCCCCCC-EEEEC----CCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 0285997635589999998658878778777750227-765289866-68864----86568788999998730368755
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEE-EECCC
Q ss_conf 799827998899803878598899999999971952301003078984701567-52274
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLI-AAMNP 133 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lv-aa~NP 133 (186)
|- .=|--|||+.=++++..|+||--||+= |.+..+| ||+.|
T Consensus 115 ~k-----YKvYIIDEVHMLS~~AFNALLKTLEEP-------------P~hV~FIlATTE~ 156 (363)
T TIGR02397 115 GK-----YKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVVFILATTEP 156 (363)
T ss_pred CC-----CCEEEEECCCCCCHHHHHHHHHHHCCC-------------CCCEEEEEECCCH
T ss_conf 44-----335887323028656899987652279-------------8762888734871
No 154
>PRK03839 putative kinase; Provisional
Probab=97.22 E-value=0.0006 Score=43.94 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
.|.||||||++|+.|++-|
T Consensus 6 TGTPGtGKTTva~~La~~l 24 (180)
T PRK03839 6 TGTPGVGKTTISKLLAEKL 24 (180)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 7899999899999999976
No 155
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.00059 Score=43.97 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=26.5
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 279988998038785988999999999719
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
.+..-|..|||...++.+..|+||.-||+=
T Consensus 137 ~g~~kV~IId~ad~mn~~aaNALLK~LEEP 166 (363)
T PRK07471 137 EGGWRVVIVDTADEMNANAANALLKVLEEP 166 (363)
T ss_pred CCCCEEEEEECHHHHCHHHHHHHHHHHCCC
T ss_conf 489669998687873889999999972158
No 156
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=97.17 E-value=0.00088 Score=42.95 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=51.3
Q ss_pred CCCCEEEEECHH-HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCC--CCCCCCCCCCCCCHHHHHHH
Q ss_conf 799889980387-859889999999997195230100307898470156752274658--87889887643899999999
Q gi|254781026|r 80 AHNGVLFLDEIP-EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRC--GMSNKDENVCIRGPRCATEY 156 (186)
Q Consensus 80 Ah~GVLflDE~~-e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpc--G~~~~~~~~c~c~~~~~~~Y 156 (186)
..+=|+|+|.+. +-....-..|.-.||-+ ....|.++++.||+|-.+- .++.+....- ....-..-
T Consensus 106 ~~kFIiF~DDLSFe~~d~~yk~LKs~LeG~---------l~~~p~NvliYaTSNRRHLi~e~~~d~~~~~--ei~~~d~~ 174 (248)
T pfam05673 106 PYRFILFCDDLSFEEGESSYKALKSVLEGG---------LEARPDNVLIYATSNRRHLIPEYMSDNEGDG--EIHPGDAV 174 (248)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCC---------CCCCCCEEEEEEECCCHHCCCHHHCCCCCCC--CCCCCHHH
T ss_conf 975799963557678973699999996576---------4468873899984270003633323477744--36725577
Q ss_pred HHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf 851224321004259983885668
Q gi|254781026|r 157 QARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 157 ~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
..|+| |-|||.|.+.+.+.+..
T Consensus 175 eEklS--LsDRFGL~l~F~~~~q~ 196 (248)
T pfam05673 175 EEKLS--LSDRFGLWLGFHPFDQD 196 (248)
T ss_pred HHHHH--HHHHCCEEEEECCCCHH
T ss_conf 74534--89867717850799999
No 157
>PRK13695 putative NTPase; Provisional
Probab=97.12 E-value=0.00076 Score=43.35 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCCEEEEECHHHC---CHHHHHHHHHHHHCCCEE
Q ss_conf 79988998038785---988999999999719523
Q gi|254781026|r 80 AHNGVLFLDEIPEF---SPQTLNALRQPLETGECI 111 (186)
Q Consensus 80 Ah~GVLflDE~~e~---~~~~l~~L~~~le~g~v~ 111 (186)
.+.-++.+||++.| ++.-.++++++|++.+..
T Consensus 98 ~~~dlivIDEIG~MEl~s~~F~~~V~~~L~s~kpv 132 (174)
T PRK13695 98 READLIIIDEIGPMELKSKKFVSAVEEVLKSEKPV 132 (174)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 57879999631033110499999999997389989
No 158
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.00036 Score=45.26 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 7998899803878598899999999971952
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
+.+-|.+|||...++....|+||.-||+=--
T Consensus 92 g~~KV~II~~ae~m~~~AaNALLKtLEEPP~ 122 (313)
T PRK05564 92 GDKKVIIIYKSEKMTEQAQNAFLKTIEEPPK 122 (313)
T ss_pred CCCEEEEECCHHHHCHHHHHHHHHCCCCCCC
T ss_conf 8956999807777589999998455036899
No 159
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=97.01 E-value=0.00079 Score=43.23 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=58.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC-----CHHHHHHHHCEEECCCCCCCCCCCCCCCEEECC-C-CCCCHHHCCC-CCCCC
Q ss_conf 97778605999999988748898-----978853230000002788875653111202037-7-5210011023-43456
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL-----SLEESLEVSMIYSISGHSSHEYSFIQNRPFRSP-H-HSVTIAALIG-GGLQV 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l-----~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~-~-~~~~~~~l~g-g~~~~ 72 (186)
|.|+.|||||++||-++.-|.=- ++...|+.+. .-..|. ..+ ++ .+-.- . .......+.. ..+.+
T Consensus 43 f~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~-~i~~~~--~~d-~~---e~daas~~~v~~~r~~~~~~~~~p 115 (663)
T PRK08770 43 FTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACL-DIDAGR--YID-LL---EIDAASNTGVDDVREVIENAQYMP 115 (663)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCC--CCC-EE---EEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 22799888889999999986789999999787787789-885489--886-58---864676588899999998443588
Q ss_pred CHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 82799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 73 LPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 73 ~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
+.+..-|..|||+.-++.+..|+|+.-||+=--+| .| ++||+.|-
T Consensus 116 -----~~~~~kvy~idevhmls~~~fna~lktleepp~~v-----------~f-~~att~~~ 160 (663)
T PRK08770 116 -----SRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHV-----------KF-LLATTDPQ 160 (663)
T ss_pred -----CCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCE-----------EE-EEECCCHH
T ss_conf -----77743699970043328999999987402786442-----------89-98548733
No 160
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.00 E-value=0.00034 Score=45.41 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
.||||+||||.|+-++.-|
T Consensus 6 SGpPGSGktTvA~~lA~~L 24 (173)
T TIGR02173 6 SGPPGSGKTTVAKILAEKL 24 (173)
T ss_pred ECCCCCCHHHHHHHHHHHC
T ss_conf 3589686478999999863
No 161
>KOG0991 consensus
Probab=96.99 E-value=0.00078 Score=43.26 Aligned_cols=98 Identities=28% Similarity=0.383 Sum_probs=58.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHH-HHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 977786059999999887488989788-5323000000278887565311120203775210011023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEE-SLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e-~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l 79 (186)
+.||||+||||-+.+++..|---+.+| .+|..+-. ..++-.-| .....+.......-||
T Consensus 53 isGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd--------eRGIDvVR--------n~IK~FAQ~kv~lp~g---- 112 (333)
T KOG0991 53 ISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD--------ERGIDVVR--------NKIKMFAQKKVTLPPG---- 112 (333)
T ss_pred EECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCC--------CCCCHHHH--------HHHHHHHHHHCCCCCC----
T ss_conf 527999861648999999983806665763205765--------54608999--------9999998720348998----
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEE
Q ss_conf 799889980387859889999999997195230100307898470156752
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa 130 (186)
-+-|..+||.+-+....+++||-.||-...+ +||.|.+.
T Consensus 113 -rhKIiILDEADSMT~gAQQAlRRtMEiyS~t-----------tRFalaCN 151 (333)
T KOG0991 113 -RHKIIILDEADSMTAGAQQALRRTMEIYSNT-----------TRFALACN 151 (333)
T ss_pred -CEEEEEEECCCHHHHHHHHHHHHHHHHHCCC-----------CHHHHHHC
T ss_conf -5248996152202068999999999997063-----------20000015
No 162
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.00078 Score=43.27 Aligned_cols=101 Identities=22% Similarity=0.161 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH----------HHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC-CCHHHCCCCC
Q ss_conf 9777860599999998874889897----------8853230000002788875653111202037752-1001102343
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL----------EESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS-VTIAALIGGG 69 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~----------~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~-~~~~~l~gg~ 69 (186)
|.|+.|||||+.||-++.-|.=.+. .-.|+.+. ++......+...+ ..+-+.. .....+..+
T Consensus 50 ~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~--~i~~~~~~d~~e~----daas~~~v~~~r~~~~~- 122 (600)
T PRK09111 50 LTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQ--AIMEGRHVDVIEM----DAASHTGVDDIREIIES- 122 (600)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH--HHHCCCCCCEEEE----ECCCCCCHHHHHHHHHH-
T ss_conf 4578987899999999999669887666899889899886589--8866899875885----15545788899999986-
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEE
Q ss_conf 456827998279988998038785988999999999719523
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECI 111 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~ 111 (186)
....| +.+-.-|..|||+.-++.+..|+|+.-||+=--+
T Consensus 123 ~~~~p---~~~~~kv~iidevhmls~~afnallktleepp~~ 161 (600)
T PRK09111 123 VRYRP---VSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH 161 (600)
T ss_pred HCCCC---CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 05388---7775469996001105799999999876259865
No 163
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.00071 Score=43.51 Aligned_cols=112 Identities=26% Similarity=0.257 Sum_probs=59.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-----HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 977786059999999887488989-----788532300000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-----LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
|.||.|||||++||-++.-|.=.+ +.-.|+.++ ++......+...+. ..-+.++....-+-......|
T Consensus 43 fsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck--~I~~g~~~DviEiD----aASn~gVddiR~i~e~v~y~P- 115 (515)
T COG2812 43 FSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK--EINEGSLIDVIEID----AASNTGVDDIREIIEKVNYAP- 115 (515)
T ss_pred HCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH--HHHCCCCCCCHHHH----HHHCCCHHHHHHHHHHHCCCC-
T ss_conf 13777767104999999995688987777225316668--65148864101136----444548679999998724688-
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEE-EECCCC
Q ss_conf 99827998899803878598899999999971952301003078984701567-522746
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLI-AAMNPC 134 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lv-aa~NPc 134 (186)
+.+..-|..|||+.-++.+..++||.-+|+- |..+.+| ||++|-
T Consensus 116 --~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-------------P~hV~FIlATTe~~ 160 (515)
T COG2812 116 --SEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-------------PSHVKFILATTEPQ 160 (515)
T ss_pred --CCCCCEEEEEECHHHHHHHHHHHHHCCCCCC-------------CCCEEEEEECCCCC
T ss_conf --6666418998318764378888875111368-------------66748998538867
No 164
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.00098 Score=42.69 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC--CHHHHHHHHC--EEECCCCCCCCCCCCCCCEEECCCCCCCHHHC--CCCCCCCCH
Q ss_conf 97778605999999988748898--9788532300--00002788875653111202037752100110--234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL--SLEESLEVSM--IYSISGHSSHEYSFIQNRPFRSPHHSVTIAAL--IGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l--~~~e~le~~~--i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l--~gg~~~~~p 74 (186)
|.||+|+||+.+|+.++..|-=. ...+.|..+. ....+|.-+ + +..-.|- ..+.....+ .-......|
T Consensus 33 f~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HP-D--~~~i~p~---~~~i~idqiR~L~~~~~~~p 106 (329)
T PRK08058 33 FEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHP-D--VHLVAPD---GQSIKKDQIRYLKEEFSKSG 106 (329)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC-C--EEEECCC---CCCCCHHHHHHHHHHHCCCC
T ss_conf 5789998899999999999739999999988788899998769999-7--6774566---14077999999999964387
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 79982799889980387859889999999997195
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
..+.+-|..|||...++....|+||.-||+=-
T Consensus 107 ---~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp 138 (329)
T PRK08058 107 ---VESNKKVYIIEHADKMTASAANSLLKFLEEPS 138 (329)
T ss_pred ---CCCCCEEEEEECHHHHCHHHHHHHHHHHHCCC
T ss_conf ---57886799973477629999999999864689
No 165
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.0012 Score=42.09 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=57.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHH----------HHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCC-CHHHCCCCC
Q ss_conf 97778605999999988748898978----------8532300000027888756531112020377521-001102343
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLE----------ESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV-TIAALIGGG 69 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~----------e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~-~~~~l~gg~ 69 (186)
|.|+.|||||++||-++.-|.=.+.. -.|+.+. .-..|.. .+...+. ..-...+ ..+.+..+
T Consensus 43 f~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~-~i~~g~~-~d~~EiD----aas~~~v~~~r~l~~~- 115 (721)
T PRK12323 43 FTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACT-EIDAGRF-VDYIEMD----AASNRGVDEMAQLLDQ- 115 (721)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH-HHHCCCC-CCEEEEE----CCCCCCHHHHHHHHHH-
T ss_conf 0279988898999999999768998667898788787765468-7756898-7647743----6767888999999985-
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 45682799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
....| +....-|..|||+.-++.+..|+|+.-||+=--++ .| ++||+.|-
T Consensus 116 ~~y~P---~~~~~KvyiiDevhmls~~afnalLKtlEePP~hv-----------~F-ilaTT~~~ 165 (721)
T PRK12323 116 AVYAP---TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV-----------KF-ILATTDPQ 165 (721)
T ss_pred CCCCC---CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCE-----------EE-EEECCCHH
T ss_conf 45588---76644699985400058999999998401797553-----------89-99438634
No 166
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.00079 Score=43.22 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEE------ECCCC-CCCHHHCCCCCCCCC
Q ss_conf 97778605999999988748898978853230000002788875653111202------03775-210011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPF------RSPHH-SVTIAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~------~~~~~-~~~~~~l~gg~~~~~ 73 (186)
++|||++||||++|-++.++-.-- .+........+..+.- -.|.| -.....+..+. ++
T Consensus 142 iigpP~~GKTTlLRdiaR~~s~g~-------------~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~c--pk 206 (308)
T COG3854 142 IIGPPQVGKTTLLRDIARLLSDGI-------------NQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPC--PK 206 (308)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCC-------------CCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCC--HH
T ss_conf 965998870779999999863151-------------126773289971500430343588603232210104656--17
Q ss_pred HH----HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 27----99827998899803878598899999999971952
Q gi|254781026|r 74 PG----EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 74 pG----~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
.- +|.-----|+.+||+... ....+++++++-|.-
T Consensus 207 ~~gmmmaIrsm~PEViIvDEIGt~--~d~~A~~ta~~~GVk 245 (308)
T COG3854 207 AEGMMMAIRSMSPEVIIVDEIGTE--EDALAILTALHAGVK 245 (308)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHHHHHCCCE
T ss_conf 888999999549957998343647--779999999854858
No 167
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.87 E-value=0.00019 Score=46.81 Aligned_cols=117 Identities=26% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
+-||||+||||+.- |.+-.....|+-.+..-..++.. ...+..+--+.-.-..|+...-|....
T Consensus 1499 ~cGppGSgK~mlM~------~sLrs~~~~ev~~~Nfs~~t~T~--------s~ls~Ler~t~yy~~tg~~~l~PK~~v-- 1562 (3164)
T COG5245 1499 YCGPPGSGKEMLMC------PSLRSELITEVKYFNFSTCTMTP--------SKLSVLERETEYYPNTGVVRLYPKPVV-- 1562 (3164)
T ss_pred EECCCCCCCCHHCC------HHHHHHHHEEEEEEEECCCCCCH--------HHHHHHHHHCEEECCCCEEEECCCCCH--
T ss_conf 97899975101126------36665430015677511245778--------899999864015236882797667421--
Q ss_pred CCCEEEEECHHH------CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 998899803878------598899999999971952301003078984701567522746
Q gi|254781026|r 81 HNGVLFLDEIPE------FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 81 h~GVLflDE~~e------~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
-.+|||.||+|. ++++++--||+-||.|-..-+-+..=++. .+..++||+||-
T Consensus 1563 K~lVLFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~ 1621 (3164)
T COG5245 1563 KDLVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPG 1621 (3164)
T ss_pred HHEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHH-CCEEEECCCCCC
T ss_conf 32178731147742001389744886287787525555366657621-135998368999
No 168
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=96.84 E-value=0.0013 Score=41.94 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC------------HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC
Q ss_conf 977786059999999887488989------------78853230000002788875653111202037752100110234
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS------------LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGG 68 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~------------~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg 68 (186)
++|||=||||||+|=|+-++-.-. -+|--|+++- +.|....+.+.=..--..+|-.- ++.==
T Consensus 128 iIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC--~~GvPQ~~vG~RtDVLD~CPKAE----GmMM~ 201 (282)
T TIGR02858 128 IISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGC--VNGVPQLDVGIRTDVLDGCPKAE----GMMML 201 (282)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHH--CCCCCCCCCCCCEEECCCCCHHH----HHHHH
T ss_conf 8868898851048889888607854246899746998432465654--58824144676067517885378----99999
Q ss_pred CCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf 34568279982799889980387859889999999997195230
Q gi|254781026|r 69 GLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECII 112 (186)
Q Consensus 69 ~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i 112 (186)
.++.=| =|+-.|||. +.+..++|++|+..|.--|
T Consensus 202 iRSMSP--------~Viv~DEIG--r~ED~~Al~eA~naGV~~I 235 (282)
T TIGR02858 202 IRSMSP--------DVIVVDEIG--REEDVEALLEALNAGVSVI 235 (282)
T ss_pred HHCCCC--------CEEEEECCC--CHHHHHHHHHHHCCCCEEE
T ss_conf 970698--------579981488--9533899999861675688
No 169
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.83 E-value=0.0018 Score=41.19 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|+|+-|+|||++.+.|. |+ .++- .+. . ..-+-..+.+.
T Consensus 57 L~G~QG~gKStf~~~L~---~~-----------~~~d--------~~~---------------~-----~~~kD~~~~l~ 94 (198)
T pfam05272 57 LQGAQGSGKSTFLKKLG---GE-----------WFTD--------SIR---------------S-----FEGKDAYEKLQ 94 (198)
T ss_pred EECCCCCCHHHHHHHHH---HH-----------HCCC--------CCC---------------C-----CCCCHHHHHHH
T ss_conf 98898678999999973---77-----------5156--------555---------------7-----67738999999
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHH--CCEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 9988998038785988999999999719523010--030789847015675227465887889887
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIAR--ANRKISYPSRIQLIAAMNPCRCGMSNKDEN 144 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R--~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~ 144 (186)
..-+..+||+.-+++..++.+..-+...+.++-+ +.....+|-++.++||+|.. .++.|+..
T Consensus 95 ~~wi~el~El~~~~k~~~~~lK~fls~~~d~~R~pY~~~~~~~pR~~vfigTtN~~--~~L~D~TG 158 (198)
T pfam05272 95 GVWIVEIAELDGFSKAEVEAIKAFITRTVDSFRAPYGRRAESFPRQCVFVGTTNRD--EFLKDPTG 158 (198)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCHHCCCCCCEECCEEEEEEEECCCC--CCCCCCCC
T ss_conf 87873259875136532999999845413123102235640065479999963887--65579999
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.0012 Score=42.12 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=26.3
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 79988998038785988999999999719
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
...-|..|||.+.|+.+..|+|+.-+|+=
T Consensus 112 g~~KV~IId~Ad~mn~~AaNalLK~LEEP 140 (319)
T PRK08769 112 GIAQVVIVDPADAINRSACNALLKTLEEP 140 (319)
T ss_pred CCCEEEEECCHHHCCHHHHHHHHHHHCCC
T ss_conf 79569998066752899999999982279
No 171
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.76 E-value=0.0031 Score=39.76 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=30.7
Q ss_pred HCCCCEEEEECHH-----HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEE
Q ss_conf 2799889980387-----859889999999997195230100307898470156752
Q gi|254781026|r 79 LAHNGVLFLDEIP-----EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130 (186)
Q Consensus 79 lAh~GVLflDE~~-----e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa 130 (186)
+.+--||.+||.- +-...+++.|.+.+++.++-+---+.+.--.||-++|.-
T Consensus 492 l~~~~iliLDEaTs~LD~~te~~i~~~l~~~~~~rT~i~IaHRlsti~~aD~I~vl~ 548 (575)
T PRK11160 492 LHDAPLLLLDEPTEGLDAETERQILELLFEHAQNKTVLMITHRLTGLEQFDQICVMD 548 (575)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEE
T ss_conf 459999998498666799999999999998669999999716698999599999998
No 172
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.74 E-value=0.0093 Score=36.95 Aligned_cols=98 Identities=26% Similarity=0.273 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCH-------HHCCCCCCCCC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100-------11023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTI-------AALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~-------~~l~gg~~~~~ 73 (186)
++|+-|+|||||++.+.+++|+-+-. |.. .+ .....++.+.|+-... +..+ ..+-||...-.
T Consensus 32 i~G~sGsGKSTLl~~l~Gl~~~~~G~-------i~~-~~--~~~i~~v~Q~~~l~~~-tl~e~l~~p~~~~LSGGqkQRv 100 (166)
T cd03223 32 ITGPSGTGKSSLFRALAGLWPWGSGR-------IGM-PE--GEDLLFLPQRPYLPLG-TLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred EECCCCCCHHHHHHHHCCCCCCCCCE-------EEE-CC--CCCEEEECCCCCCCCC-CHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99589998899999986987699867-------997-69--9879998564665887-5999963615467899999999
Q ss_pred HHH-HHHCCCCEEEEECH-HHCCHHHHHHHHHHHHCCC
Q ss_conf 279-98279988998038-7859889999999997195
Q gi|254781026|r 74 PGE-DSLAHNGVLFLDEI-PEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 74 pG~-i~lAh~GVLflDE~-~e~~~~~l~~L~~~le~g~ 109 (186)
.=+ .-..+--||++||- +-+++...+.+++.+.+..
T Consensus 101 alARal~~~p~iliLDEpTs~LD~~~~~~l~~~l~~~~ 138 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG 138 (166)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999964999999758533289999999999999779
No 173
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.0069 Score=37.70 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=50.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC--HHHH---HHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 977786059999999887488989--7885---32300000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS--LEES---LEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~--~~e~---le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
+.||+|+||+.+|+.++..|-=.. ..+. |..+. ...+|. ++.++.... .+++..++-.
T Consensus 27 f~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~-~~~~~~---------HPD~~~i~p-------e~~~~~I~Id 89 (328)
T PRK05707 27 LHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQ-LLAAGS---------HPDNFVLEP-------EEADKPIKVD 89 (328)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHCCC---------CCCEEEEEC-------CCCCCCCCHH
T ss_conf 47999867999999999998489999989998888999-987589---------998799842-------6667769799
Q ss_pred HH-----------HHCCCCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 99-----------82799889980387859889999999997195
Q gi|254781026|r 76 ED-----------SLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 76 ~i-----------~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
.| ..+.+-|..||+...++....|+|+.-+|+=-
T Consensus 90 qIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp 134 (328)
T PRK05707 90 QVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS 134 (328)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCC
T ss_conf 999999998317667895799950287738999999999850789
No 174
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0025 Score=40.34 Aligned_cols=93 Identities=28% Similarity=0.389 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
++||-|+||||+++.+.+++++-+-. + .+.|......... ..+. .......+-||...-..=+.+++
T Consensus 30 i~G~nGaGKSTLl~~l~gl~~~~~G~-------i-~~~g~~~~~~~~~---~~~~--~i~~v~QLSgGqkqrv~iA~al~ 96 (157)
T cd00267 30 LVGPNGSGKSTLLRAIAGLLKPTSGE-------I-LIDGKDIAKLPLE---ELRR--RIGYVPQLSGGQRQRVALARALL 96 (157)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCE-------E-EECCEECCCCCHH---HHHH--CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98788999899999995884799628-------9-9999999979999---9994--06087668869999999999997
Q ss_pred C-CCEEEEECHH-HCCHHHHHHHHHHHH
Q ss_conf 9-9889980387-859889999999997
Q gi|254781026|r 81 H-NGVLFLDEIP-EFSPQTLNALRQPLE 106 (186)
Q Consensus 81 h-~GVLflDE~~-e~~~~~l~~L~~~le 106 (186)
+ --++++||-. -+++.....+.+.+.
T Consensus 97 ~~p~ililDEPtsgLD~~~~~~l~~~i~ 124 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLR 124 (157)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 0999999969876689999999999999
No 175
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.69 E-value=0.0018 Score=41.14 Aligned_cols=87 Identities=25% Similarity=0.405 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
++||-|+||||+.|-+++++.|-+.+-. +.|.. +.-.|. ...+-||...-..=+-+++
T Consensus 30 ilGpNGaGKSTllk~i~G~l~p~~G~i~--------~~g~~----------~~~~pq----~~~LSGGqrQRv~iAral~ 87 (177)
T cd03222 30 IVGPNGTGKTTAVKILAGQLIPNGDNDE--------WDGIT----------PVYKPQ----YIDLSGGELQRVAIAAALL 87 (177)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCCEE--------ECCCC----------EECCCC----CCCCCHHHHHHHHHHHHHH
T ss_conf 9899999999999999688678899466--------66861----------221555----1507989999999999982
Q ss_pred -CCCEEEEECH-HHCCH----HHHHHHHHHHHCCC
Q ss_conf -9988998038-78598----89999999997195
Q gi|254781026|r 81 -HNGVLFLDEI-PEFSP----QTLNALRQPLETGE 109 (186)
Q Consensus 81 -h~GVLflDE~-~e~~~----~~l~~L~~~le~g~ 109 (186)
+--++++||- +-++. .+.+.+++..+++.
T Consensus 88 ~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~~ 122 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK 122 (177)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 39999997488653899999999999999999659
No 176
>KOG0728 consensus
Probab=96.66 E-value=0.0031 Score=39.80 Aligned_cols=120 Identities=23% Similarity=0.342 Sum_probs=63.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCH-HHHHH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682-79982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLP-GEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~p-G~i~l 79 (186)
|.||||+|||.+||+.+.- +.+. + +|..++--....++.|.+-.+. =..++
T Consensus 186 LygppgtGktLlaraVahh----------------t~c~-------f-----irvsgselvqk~igegsrmvrelfvmar 237 (404)
T KOG0728 186 LYGPPGTGKTLLARAVAHH----------------TDCT-------F-----IRVSGSELVQKYIGEGSRMVRELFVMAR 237 (404)
T ss_pred EECCCCCCHHHHHHHHHHH----------------CCEE-------E-----EEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8469997562999998754----------------1407-------9-----9964499999985013899999999987
Q ss_pred CC-CCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 79-988998038785-----------988999999999719523010030789847015675227465887889887643
Q gi|254781026|r 80 AH-NGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI 147 (186)
Q Consensus 80 Ah-~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~ 147 (186)
-| -.|.|+||++-. +..++..+++-|.+= .|...+ -++-+|.|+|---.
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql------dgfeat--knikvimatnridi----------- 298 (404)
T KOG0728 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL------DGFEAT--KNIKVIMATNRIDI----------- 298 (404)
T ss_pred HCCCCEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC------CCCCCC--CCEEEEEECCCCCC-----------
T ss_conf 50882675000012123434578986389999999999740------240003--66269984164222-----------
Q ss_pred CCHHHHHHHHHHCCHHHH--HCCCEEEECCCCCH
Q ss_conf 899999999851224321--00425998388566
Q gi|254781026|r 148 RGPRCATEYQARISGPLM--DRIDIRIAVPSRTH 179 (186)
Q Consensus 148 c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~~~ 179 (186)
|..+|| -|||-.+.+|+...
T Consensus 299 ------------ld~allrpgridrkiefp~p~e 320 (404)
T KOG0728 299 ------------LDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred ------------CCHHHCCCCCCCCCCCCCCCCH
T ss_conf ------------4686638775455564899877
No 177
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.65 E-value=0.002 Score=40.93 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-----HHHH-HHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCH
Q ss_conf 977786059999999887488989-----7885-3230000002788875653111202037752100110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-----LEES-LEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~-le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~p 74 (186)
|.|-|||||||.-|++.++--.+. .++. .+--.|.=+|.+.+....+ .....-...+...-++-+.....-
T Consensus 370 LTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl---~E~TG~~a~TIHRLlG~~~~~~~~ 446 (769)
T TIGR01448 370 LTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRL---AEVTGLEALTIHRLLGYGSDTKSE 446 (769)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHC---CCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 85778886168999999999871687755312456776488737743788851---100262123477863689888732
Q ss_pred H--HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECC
Q ss_conf 7--998279988998038785988999999999719523010030789847015675227
Q gi|254781026|r 75 G--EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 (186)
Q Consensus 75 G--~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~N 132 (186)
+ .-..++-=.+.+||+.=++.-...+|+.++-++ |+.+|||=..
T Consensus 447 ~k~~~~~~~~DL~IvDE~SM~Dt~L~~~lL~a~P~~--------------a~lllVGD~D 492 (769)
T TIGR01448 447 NKNLEDPIDADLLIVDESSMVDTWLASSLLAAVPDH--------------ARLLLVGDAD 492 (769)
T ss_pred CHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC--------------CEEEEECCCC
T ss_conf 110113478776998146218899999998617977--------------7798883768
No 178
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.64 E-value=0.0008 Score=43.20 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=18.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
|||+-|+|||||++.|++.++|-
T Consensus 32 LVG~NGsGKSTLlklL~G~~~~d 54 (638)
T PRK10636 32 LVGKNGCGKSTLLALLKNEISAD 54 (638)
T ss_pred EECCCCCHHHHHHHHHCCCCCCC
T ss_conf 98899988999999980899888
No 179
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=96.63 E-value=0.0027 Score=40.09 Aligned_cols=20 Identities=50% Similarity=0.801 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
+.||||+|||++|+.|+.-+
T Consensus 3 l~G~~G~GKS~~a~~la~~~ 22 (105)
T pfam00910 3 LYGPPGCGKSTLAKYLARAL 22 (105)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 97999898899999999999
No 180
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=96.63 E-value=0.00075 Score=43.38 Aligned_cols=21 Identities=38% Similarity=0.649 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHH---HHHCC
Q ss_conf 9777860599999998---87488
Q gi|254781026|r 1 MIGPPGARKSMLASCL---PSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l---~~iLP 21 (186)
||||-||||||++|.| -++.|
T Consensus 32 lIGPSGCGKSTlLR~lNRMnDl~~ 55 (248)
T TIGR00972 32 LIGPSGCGKSTLLRSLNRMNDLVP 55 (248)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 877889867899999887764078
No 181
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0045 Score=38.79 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=26.5
Q ss_pred HHHHHC--CCCEEEEECHHHC---CHHHHHHHHHHHHCCCEE
Q ss_conf 799827--9988998038785---988999999999719523
Q gi|254781026|r 75 GEDSLA--HNGVLFLDEIPEF---SPQTLNALRQPLETGECI 111 (186)
Q Consensus 75 G~i~lA--h~GVLflDE~~e~---~~~~l~~L~~~le~g~v~ 111 (186)
-.|.+| +.-|..+||+..| ++...+.+.++|.++.-.
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpl 133 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPL 133 (179)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHCCHHHHHHHHHHHCCCCCE
T ss_conf 999988634998999433633020088999999996589937
No 182
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.00095 Score=42.77 Aligned_cols=21 Identities=52% Similarity=0.722 Sum_probs=18.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
++||||+||||+|+.|+.-++
T Consensus 5 ilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 5 ILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred EECCCCCCHHHHHHHHHHHCC
T ss_conf 989999988999999999769
No 183
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.0026 Score=40.16 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.4
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 998899803878598899999999971952
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
..-|..|||+..++.+..++||--+|+=--
T Consensus 92 ~~Kv~IIdea~~lt~~A~NaLLKtLEEPp~ 121 (303)
T PRK07132 92 QKKILIIKNIEKTSNSSLNALLKTIEEPSK 121 (303)
T ss_pred CEEEEEEECHHHCCHHHHHHHHHHCCCCCC
T ss_conf 706999816553399999999987038986
No 184
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.61 E-value=0.0013 Score=41.98 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+|||||+|.|+++.++-
T Consensus 38 LvG~NGaGKSTLlriLaG~~~~~ 60 (556)
T PRK11819 38 VLGLNGAGKSTLLRIMAGVDKEF 60 (556)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999971999999984799878
No 185
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0013 Score=41.97 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC-HHHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568-279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL-PGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~-pG~i~l 79 (186)
++||-|+|||||.+.+.++++|-+-.-.+.-..+.+.........+++...+.-.+..+..+---..||...+ .=+.++
T Consensus 31 l~G~NGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~kqrv~ia~al 110 (173)
T cd03230 31 LLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQAL 110 (173)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98789979999999997685778788999999988684888657899956876671267789863398999999999999
Q ss_pred C-CCCEEEEECH-HHCCHHHHHHHHHHHHC
Q ss_conf 7-9988998038-78598899999999971
Q gi|254781026|r 80 A-HNGVLFLDEI-PEFSPQTLNALRQPLET 107 (186)
Q Consensus 80 A-h~GVLflDE~-~e~~~~~l~~L~~~le~ 107 (186)
+ +--+|++||- .-+++...+.+++.+.+
T Consensus 111 ~~~p~lllLDEPt~gLD~~~~~~i~~~i~~ 140 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 649999999088657999999999999999
No 186
>KOG0743 consensus
Probab=96.58 E-value=0.0011 Score=42.39 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
|.||||||||.+..+||..|-
T Consensus 240 LYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743 240 LYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred EECCCCCCHHHHHHHHHHHCC
T ss_conf 047999988899999972058
No 187
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.54 E-value=0.0011 Score=42.39 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++|+-|+|||||++.|++.+|+
T Consensus 34 LVG~NGsGKSTLl~iL~G~~~~ 55 (632)
T PRK11147 34 LVGRNGAGKSTLMKILSGEVLL 55 (632)
T ss_pred EECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999998799999998389988
No 188
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.0037 Score=39.31 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC------CCHHHH
Q ss_conf 79988998038785988999999999719523010030789847015675227465887889887643------899999
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI------RGPRCA 153 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~------c~~~~~ 153 (186)
+.+-|..||++..++....|+|+.-||+=.. +-|+|+. .||-- -+..=...|. -+..++
T Consensus 123 ~~~kVvII~~ae~m~~~AaNaLLKtLEEP~~------------~~fILit-~~~~~--lLpTI~SRCQ~i~F~~l~~~~i 187 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGN------------GTLILIA-PSPES--LLPTIVSRCQIIPFYRLSDEQL 187 (314)
T ss_pred CCCEEEEECCHHHCCHHHHHHHHHHHCCCCC------------CEEEEEE-CCHHH--CCHHHHCCCEEEECCCCCHHHH
T ss_conf 8847999889787199999999986147878------------5699997-99364--9146641875633899899999
Q ss_pred HHHHHHCC
Q ss_conf 99985122
Q gi|254781026|r 154 TEYQARIS 161 (186)
Q Consensus 154 ~~Y~~rls 161 (186)
.+|+.+..
T Consensus 188 ~~~L~~~~ 195 (314)
T PRK07399 188 EQVLKRLG 195 (314)
T ss_pred HHHHHHCC
T ss_conf 99999716
No 189
>KOG0726 consensus
Probab=96.48 E-value=0.0043 Score=38.93 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH--
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456827998--
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-- 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-- 78 (186)
|+|+||+|||.||++.+.-- |+ + ..|..++--....++.|..-. --...
T Consensus 224 lyG~PGTGKTLLAKAVANqT---------------SA--------T-----FlRvvGseLiQkylGdGpklv-RqlF~vA 274 (440)
T KOG0726 224 LYGEPGTGKTLLAKAVANQT---------------SA--------T-----FLRVVGSELIQKYLGDGPKLV-RELFRVA 274 (440)
T ss_pred EECCCCCCHHHHHHHHHCCC---------------CH--------H-----HHHHHHHHHHHHHHCCCHHHH-HHHHHHH
T ss_conf 86799975368888772455---------------21--------2-----455650899998736551999-9999888
Q ss_pred -HCCCCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCC
Q ss_conf -279988998038785-----------988999999999719523010030789847015675227465
Q gi|254781026|r 79 -LAHNGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCR 135 (186)
Q Consensus 79 -lAh~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcp 135 (186)
.---.|.|+||++-. .+.++..+++-|.+=-=.-+|+ +.-+|.|+|--.
T Consensus 275 ~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg--------DvKvimATnrie 335 (440)
T KOG0726 275 EEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG--------DVKVIMATNRIE 335 (440)
T ss_pred HHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------CEEEEEECCCCC
T ss_conf 7529826986400110452134788507899999999987426866567--------758997416534
No 190
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.0019 Score=40.96 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=50.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH--HHHHHHH--CEEECCCCCCCCCCCCCCCEEECCCC----CCCHHHCCCCCCCC
Q ss_conf 9777860599999998874889897--8853230--00000278887565311120203775----21001102343456
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL--EESLEVS--MIYSISGHSSHEYSFIQNRPFRSPHH----SVTIAALIGGGLQV 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~--~e~le~~--~i~s~~g~~~~~~~~~~~~p~~~~~~----~~~~~~l~gg~~~~ 72 (186)
+.||+|+||+.+|+.++.-|-=.+. .+.|..+ |....+|. ++.+...-. ++... ..+..
T Consensus 28 ~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~---------HPD~~~i~~~~~k~I~vd----~IR~l 94 (324)
T PRK06871 28 FKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGN---------HPDFHILEPIDGKDIGVD----QVREI 94 (324)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC---------CCCEEEEECCCCCCCCHH----HHHHH
T ss_conf 68999978999999999998289999999888898999997389---------998799846788878899----99999
Q ss_pred CHHH---HHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 8279---982799889980387859889999999997195
Q gi|254781026|r 73 LPGE---DSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 73 ~pG~---i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
..-. =....+-|.+||+...++....|+|+.-+|+=-
T Consensus 95 ~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp 134 (324)
T PRK06871 95 NEKVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR 134 (324)
T ss_pred HHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9998646220596699975888857999999999833898
No 191
>KOG0729 consensus
Probab=96.42 E-value=0.0042 Score=38.97 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=51.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC-HHHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568-279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL-PGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~-pG~i~l 79 (186)
|.||||+|||..||+.+.-- +.. -+|..++--....++-|.+-.+ -=+.++
T Consensus 216 lyGPPGtGKTL~ARAVANRT-----------------------dAc-----FIRViGSELVQKYvGEGARMVRElFeMAr 267 (435)
T KOG0729 216 LYGPPGTGKTLCARAVANRT-----------------------DAC-----FIRVIGSELVQKYVGEGARMVRELFEMAR 267 (435)
T ss_pred EECCCCCCHHHHHHHHHCCC-----------------------CCE-----EEEEHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 86899986108999874566-----------------------745-----87631189999986246899999999852
Q ss_pred -CCCCEEEEECHHH-----CC------HHHHHHHHHHHHCCCEEEHHCCEEEE
Q ss_conf -7998899803878-----59------88999999999719523010030789
Q gi|254781026|r 80 -AHNGVLFLDEIPE-----FS------PQTLNALRQPLETGECIIARANRKIS 120 (186)
Q Consensus 80 -Ah~GVLflDE~~e-----~~------~~~l~~L~~~le~g~v~i~R~g~~~~ 120 (186)
..-.++|+||++- |+ ..++..+++-..+=--...|+++.+-
T Consensus 268 ~KKACiiFFDEiDAiGGaRFDDg~ggDNEVQRTMLEli~QLDGFDpRGNIKVl 320 (435)
T KOG0729 268 TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 36527998410102267203578887279999999999860377888875898
No 192
>KOG3595 consensus
Probab=96.38 E-value=0.0015 Score=41.54 Aligned_cols=56 Identities=34% Similarity=0.417 Sum_probs=39.9
Q ss_pred EEEEECHHH------CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 899803878------5988999999999719523010030789847015675227465887889
Q gi|254781026|r 84 VLFLDEIPE------FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNK 141 (186)
Q Consensus 84 VLflDE~~e------~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~ 141 (186)
|+|+||+|. ..-..++.|||.+|.+...-..- .....=-+.++++|||| |.|...+
T Consensus 195 ~~f~ddinmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~-~~~~~i~~i~~~~a~~~-~~~gr~~ 256 (1395)
T KOG3595 195 VLFVDDINMPALDKYGDQPPIELLRQMLEHGGFYDRKK-SEWVEIENVQLVGAMNP-PGGGRND 256 (1395)
T ss_pred EEEEECCCCHHHHHCCCCCHHHHHHHHHHHCEEECCCC-CCEEEEEEEEEHHHHCC-CCCCCCC
T ss_conf 34220125635554157028999776777533404454-53135442452143268-9856573
No 193
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=96.30 E-value=0.0025 Score=40.35 Aligned_cols=25 Identities=40% Similarity=0.663 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
.+||-|+|||||+.-|.+++||..-
T Consensus 392 i~G~SG~GKsTLL~~L~G~l~P~~G 416 (566)
T TIGR02868 392 ILGPSGSGKSTLLATLAGLLDPLQG 416 (566)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 8668876578999999840289999
No 194
>PRK08118 topology modulation protein; Reviewed
Probab=96.29 E-value=0.0019 Score=41.01 Aligned_cols=19 Identities=47% Similarity=0.513 Sum_probs=17.7
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
+|++|+||||||++|+..+
T Consensus 7 iG~~GsGKSTlAr~L~~~~ 25 (167)
T PRK08118 7 IGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 8899987999999999988
No 195
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.016 Score=35.59 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH------HHH--HHHHCEE---ECCCCCCCCCCCCCCCEEECCCCCCCH-------
Q ss_conf 9777860599999998874889897------885--3230000---002788875653111202037752100-------
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL------EES--LEVSMIY---SISGHSSHEYSFIQNRPFRSPHHSVTI------- 62 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~------~e~--le~~~i~---s~~g~~~~~~~~~~~~p~~~~~~~~~~------- 62 (186)
++|+-|+|||++...+.+.+||-.- .+. +....++ ++-++.+--..-.-....+--+..++.
T Consensus 352 lvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al 431 (559)
T COG4988 352 LVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAAL 431 (559)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 98899997899999984757777844888993100068778886724627998405641887773168767899999999
Q ss_pred ----------------HHCCCCCCCCCHHH-----HH---HCCCCEEEEECHH-----HCCHHHHHHHHHHHHCCCEEEH
Q ss_conf ----------------11023434568279-----98---2799889980387-----8598899999999971952301
Q gi|254781026|r 63 ----------------AALIGGGLQVLPGE-----DS---LAHNGVLFLDEIP-----EFSPQTLNALRQPLETGECIIA 113 (186)
Q Consensus 63 ----------------~~l~gg~~~~~pG~-----i~---lAh~GVLflDE~~-----e~~~~~l~~L~~~le~g~v~i~ 113 (186)
..+..||..+-.|. ++ +.+.-++++||-. |-...+++.|.+..+++++.+.
T Consensus 432 ~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i 511 (559)
T COG4988 432 DQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI 511 (559)
T ss_pred HHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 98257876167776433021588877899999999999855888889854875679876799999999999727869999
Q ss_pred HCCEEEEECCCEEEEE
Q ss_conf 0030789847015675
Q gi|254781026|r 114 RANRKISYPSRIQLIA 129 (186)
Q Consensus 114 R~g~~~~~Pa~f~Lva 129 (186)
--.......++.+++.
T Consensus 512 tHrl~~~~~~D~I~vl 527 (559)
T COG4988 512 THRLEDAADADRIVVL 527 (559)
T ss_pred ECCHHHHHCCCEEEEE
T ss_conf 7673778549989996
No 196
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.013 Score=36.11 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 7998899803878598899999999971952
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
..+-|..|||...++....++|+.-||+=--
T Consensus 94 g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP~ 124 (290)
T PRK05917 94 ANYKIYIIHEADRMTLDAISAFLKVLEDPPK 124 (290)
T ss_pred CCCEEEEECCHHHHCHHHHHHHHHHHCCCCC
T ss_conf 8826999756776389999999997347987
No 197
>KOG0990 consensus
Probab=96.25 E-value=0.0037 Score=39.30 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=23.3
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 98899803878598899999999971952
Q gi|254781026|r 82 NGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 82 ~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
--...+||.+-+..+.+++||...|+.+.
T Consensus 132 fKlvILDEADaMT~~AQnALRRviek~t~ 160 (360)
T KOG0990 132 FKLVILDEADAMTRDAQNALRRVIEKYTA 160 (360)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 15887334137669899999999987133
No 198
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.25 E-value=0.0071 Score=37.64 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=30.4
Q ss_pred HCCCCEEEEECHH-----HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEE
Q ss_conf 2799889980387-----859889999999997195230100307898470156752
Q gi|254781026|r 79 LAHNGVLFLDEIP-----EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130 (186)
Q Consensus 79 lAh~GVLflDE~~-----e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa 130 (186)
+.+--||.|||.. +-...+++.|++.+.+.++-+---+.+.--.||-++|.-
T Consensus 501 l~~~~ILILDEaTSaLD~~tE~~i~~~L~~~~~~rTviiIaHRlsti~~aD~Iivld 557 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASQGQTTLMVTHQLEDLAQMDQILVMQ 557 (588)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEE
T ss_conf 379898999898779899999999999998679998999806799998499999998
No 199
>PRK07261 topology modulation protein; Provisional
Probab=96.25 E-value=0.0021 Score=40.71 Aligned_cols=19 Identities=42% Similarity=0.443 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
+|.+|+|||||||.|+..+
T Consensus 6 iG~sGsGKSTlAr~L~~~~ 24 (171)
T PRK07261 6 IGYSGSGKSTLARFLGQHY 24 (171)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 8899986899999999987
No 200
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.25 E-value=0.01 Score=36.75 Aligned_cols=99 Identities=23% Similarity=0.218 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH--H
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799--8
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED--S 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i--~ 78 (186)
|-|+-|.|||||...+=.-||-- ...... -++-+...|.... .+. |...+.+..- -
T Consensus 70 l~GgVGrGKT~LMD~Fy~~lp~~-----------------~k~R~H--Fh~FM~~vH~~l~--~l~-g~~dpl~~iA~~~ 127 (367)
T COG1485 70 LWGGVGRGKTMLMDLFYESLPGE-----------------RKRRLH--FHRFMARVHQRLH--TLQ-GQTDPLPPIADEL 127 (367)
T ss_pred EECCCCCCHHHHHHHHHHHCCCC-----------------CCCCCC--HHHHHHHHHHHHH--HHC-CCCCCCHHHHHHH
T ss_conf 88997864999999998658764-----------------566550--7799999999999--971-8888657999999
Q ss_pred HCCCCEEEEECHHHCC---HHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCC
Q ss_conf 2799889980387859---889999999997195230100307898470156752274658
Q gi|254781026|r 79 LAHNGVLFLDEIPEFS---PQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRC 136 (186)
Q Consensus 79 lAh~GVLflDE~~e~~---~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpc 136 (186)
.++--|||+|||---+ .-++.-|+++|=.. -..||+|+|-.|.
T Consensus 128 ~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~---------------GV~lvaTSN~~P~ 173 (367)
T COG1485 128 AAETRVLCFDEFEVTDIADAMILGRLLEALFAR---------------GVVLVATSNTAPD 173 (367)
T ss_pred HHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHC---------------CCEEEEECCCCHH
T ss_conf 841788986303623757889999999999977---------------9689995899967
No 201
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.24 E-value=0.00089 Score=42.92 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.+.+++.|-+
T Consensus 33 ivG~sGsGKSTLl~~l~G~~~p~~ 56 (178)
T cd03247 33 LLGRSGSGKSTLLQLLTGDLKPQQ 56 (178)
T ss_pred EECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 999998759999999986176678
No 202
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0054 Score=38.34 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCC
Q ss_conf 77786059999999887488989788532300000027888756531112020377521001102343456827998279
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAH 81 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh 81 (186)
.|+|||||||++++|+.+= . ....-+++++-+
T Consensus 6 TGTPGvGKTT~~~~L~~lg--~----------------------------------------------~~i~l~el~~e~ 37 (180)
T COG1936 6 TGTPGVGKTTVCKLLRELG--Y----------------------------------------------KVIELNELAKEN 37 (180)
T ss_pred ECCCCCCHHHHHHHHHHHC--C----------------------------------------------CEEEHHHHHHHC
T ss_conf 3799986687999999829--8----------------------------------------------466199999866
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHH---CCCEEEHHCCEEEEEC-CCEEEEEECCCC
Q ss_conf 9889980387859889999999997---1952301003078984-701567522746
Q gi|254781026|r 82 NGVLFLDEIPEFSPQTLNALRQPLE---TGECIIARANRKISYP-SRIQLIAAMNPC 134 (186)
Q Consensus 82 ~GVLflDE~~e~~~~~l~~L~~~le---~g~v~i~R~g~~~~~P-a~f~Lvaa~NPc 134 (186)
+-+.-.||.-.--.-..+.++.-++ .....|--+-.+--+| .+..+|.-+||-
T Consensus 38 ~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~hl~~~~dlVvVLR~~p~ 94 (180)
T COG1936 38 GLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSHLLPDCDLVVVLRADPE 94 (180)
T ss_pred CCEECCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEECHHHHCCCCCCEEEEECCCHH
T ss_conf 971143776615886679999888887505884761266621787888999718989
No 203
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.018 Score=35.22 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=52.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCC---CCCHHHH---HHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC--CC
Q ss_conf 977786059999999887488---9897885---323000000278887565311120203775210011023434--56
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL---PLSLEES---LEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL--QV 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP---~l~~~e~---le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~--~~ 72 (186)
|.||.|+||+.+|+.++..|- |...... |..+.. ..+|. ++.|+..-..... ...|.. .+
T Consensus 26 ~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~-~~~g~---------HPD~~~i~p~~~~--~~~g~~~~~I 93 (325)
T PRK08699 26 FVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHL-FGQGS---------HPDFYEITPLADE--PENGRKLLQI 93 (325)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCC---------CCCEEEEECCCCC--CCCCCCCCCC
T ss_conf 5799997899999999999828999888998988888999-86599---------9996885134453--0016655667
Q ss_pred CHHH-------HH----HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf 8279-------98----27998899803878598899999999971952
Q gi|254781026|r 73 LPGE-------DS----LAHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 73 ~pG~-------i~----lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
+-.. +. .+.+-|..||+...++....|+|+.-+|+=--
T Consensus 94 ~idqiR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEEPp~ 142 (325)
T PRK08699 94 KIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPP 142 (325)
T ss_pred CHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCC
T ss_conf 6999999999971086568946999857777589999999998417888
No 204
>KOG0733 consensus
Probab=96.12 E-value=0.0025 Score=40.33 Aligned_cols=116 Identities=27% Similarity=0.302 Sum_probs=60.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|.||||||||.|||+++.=- +...++- .+..+. -..++-.+..++ -...+|
T Consensus 550 L~GPPGCGKTLlAKAVANEa------------g~NFisV---KGPELl-------------NkYVGESErAVR-~vFqRA 600 (802)
T KOG0733 550 LCGPPGCGKTLLAKAVANEA------------GANFISV---KGPELL-------------NKYVGESERAVR-QVFQRA 600 (802)
T ss_pred EECCCCCCHHHHHHHHHHHC------------CCCEEEE---CCHHHH-------------HHHHHHHHHHHH-HHHHHH
T ss_conf 75799861889999985030------------4754762---388999-------------877423789999-999986
Q ss_pred C---CCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9---988998038785-----------98899999999971952301003078984701567522746588788988764
Q gi|254781026|r 81 H---NGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC 146 (186)
Q Consensus 81 h---~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c 146 (186)
- -.|.|+||++-+ ...++++|+.-|.-..- |. ..-+|||+|-. +
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~---R~--------gV~viaATNRP--------D--- 658 (802)
T KOG0733 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE---RR--------GVYVIAATNRP--------D--- 658 (802)
T ss_pred HCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC---CC--------CEEEEEECCCC--------C---
T ss_conf 23898389851112027655777750589999999987316211---14--------25999506897--------6---
Q ss_pred CCCHHHHHHHHHHCCHHHH--HCCCEEEEC--CCCCH
Q ss_conf 3899999999851224321--004259983--88566
Q gi|254781026|r 147 IRGPRCATEYQARISGPLM--DRIDIRIAV--PSRTH 179 (186)
Q Consensus 147 ~c~~~~~~~Y~~rls~pll--dR~Dl~v~~--~~~~~ 179 (186)
.+-.++| -|||-.+.| |..++
T Consensus 659 ------------iIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733 659 ------------IIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred ------------CCCHHHCCCCCCCCEEEECCCCHHH
T ss_conf ------------5556551877557424506998788
No 205
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.12 E-value=0.0014 Score=41.79 Aligned_cols=25 Identities=44% Similarity=0.763 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
++||=|+|||||.|+++++|+|.+-
T Consensus 33 iiGpNG~GKSTLLk~l~~~l~p~~G 57 (258)
T COG1120 33 ILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 9899888999999998656788887
No 206
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.0055 Score=38.28 Aligned_cols=86 Identities=24% Similarity=0.293 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH-H
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456827998-2
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-L 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-l 79 (186)
|.||||+|||-||-+++.=+ + ..| ....++..+.+. ......... .....-... +
T Consensus 110 l~G~~G~GKthLa~Ai~~~l--------~-------~~g---~sv~f~~~~el~-----~~Lk~~~~~-~~~~~~l~~~l 165 (254)
T COG1484 110 LLGPPGVGKTHLAIAIGNEL--------L-------KAG---ISVLFITAPDLL-----SKLKAAFDE-GRLEEKLLREL 165 (254)
T ss_pred EECCCCCCHHHHHHHHHHHH--------H-------HCC---CEEEEEEHHHHH-----HHHHHHHHC-CCHHHHHHHHH
T ss_conf 98999987999999999999--------9-------839---849998859999-----999998745-52689999887
Q ss_pred CCCCEEEEECHHH--CCHHHHHHHHHHHHCCCE
Q ss_conf 7998899803878--598899999999971952
Q gi|254781026|r 80 AHNGVLFLDEIPE--FSPQTLNALRQPLETGEC 110 (186)
Q Consensus 80 Ah~GVLflDE~~e--~~~~~l~~L~~~le~g~v 110 (186)
.+--||+|||+.- ++....+.+.|.+.+...
T Consensus 166 ~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~ 198 (254)
T COG1484 166 KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYE 198 (254)
T ss_pred HHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 528989982367766881558799999999997
No 207
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.0026 Score=40.23 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-||||||++|-+++|..|-+
T Consensus 34 llGPSGcGKSTlLr~IAGLe~p~~ 57 (338)
T COG3839 34 LLGPSGCGKSTLLRMIAGLEEPTS 57 (338)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 989998888999999968877887
No 208
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0031 Score=39.75 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++++|-+
T Consensus 30 iiGpSGsGKSTLlr~i~Gl~~p~~ 53 (235)
T cd03299 30 ILGPTGSGKSVLLETIAGFIKPDS 53 (235)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999996359999999974999996
No 209
>KOG0741 consensus
Probab=95.97 E-value=0.003 Score=39.83 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=20.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|.||||||||.+||.+-..|..-+
T Consensus 261 LyGPPGTGKTLiARqIGkMLNAre 284 (744)
T KOG0741 261 LYGPPGTGKTLIARQIGKMLNARE 284 (744)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 877999870189999878745799
No 210
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.97 E-value=0.016 Score=35.50 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
.||||||||..++.+..-|
T Consensus 61 ~G~pGTGKT~~vk~v~~~l 79 (394)
T PRK00411 61 LGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 8899998999999999999
No 211
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0035 Score=39.47 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
++||-|+|||||++.++++++|-+-
T Consensus 32 lvGpnGaGKSTLl~~i~Gl~~p~~G 56 (255)
T PRK11248 32 VLGPSGCGKTTLLNLIAGFVPPQHG 56 (255)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 9999984699999999759988997
No 212
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0037 Score=39.32 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=44.7
Q ss_pred CCCCEEEEECHHHCCHHH------------HHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 799889980387859889------------99999999719523010030789847015675227465887889887643
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQT------------LNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI 147 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~------------l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~ 147 (186)
-++||.||||+++....- +.-|+ |+=+|...-.+.|..- ++.+|.-|+.--+- ..+.+
T Consensus 249 E~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlL-PlvEGstV~TKyG~Vk---TdHILFIasGAFh~--sKPSD---- 318 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLL-PLVEGSTVSTKYGPVK---TDHILFIASGAFHV--AKPSD---- 318 (444)
T ss_pred HHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCC-CCCCCCEEECCCCCCC---CCEEEEEECCCEEC--CCHHH----
T ss_conf 85690897346678743788998866432010210-3105754431544401---44378871482003--78132----
Q ss_pred CCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 8999999998512243210042599838856688
Q gi|254781026|r 148 RGPRCATEYQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 148 c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
|-.-|--||-|+|.+.+++..+
T Consensus 319 ------------LiPELQGRfPIRVEL~~Lt~~D 340 (444)
T COG1220 319 ------------LIPELQGRFPIRVELDALTKED 340 (444)
T ss_pred ------------CCHHHCCCCCEEEECCCCCHHH
T ss_conf ------------1766627773488704489989
No 213
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=95.90 E-value=0.0036 Score=39.37 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHH
Q ss_conf 97778605999999988748--8989788
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEE 27 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e 27 (186)
|+||||+||-|.|++|++=+ |.+|-=+
T Consensus 4 ~lGpPGsGKGTQa~~i~~~~gl~HISTGD 32 (232)
T TIGR01351 4 LLGPPGSGKGTQAKRIAEKLGLPHISTGD 32 (232)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 75598987667999999860885020258
No 214
>KOG2383 consensus
Probab=95.89 E-value=0.019 Score=35.09 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf 977786059999999887488989788
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEE 27 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e 27 (186)
|.|.-|||||||..-+=+-+|++..++
T Consensus 119 lYG~VGcGKTmLMDlFy~~~~~i~rkq 145 (467)
T KOG2383 119 LYGSVGCGKTMLMDLFYDALPPIWRKQ 145 (467)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCHHHH
T ss_conf 963567544677887763278401344
No 215
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.88 E-value=0.0038 Score=39.27 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++||.|+|||||++.+.+++||-
T Consensus 38 ilGpnGsGKSTLl~~i~G~~~~~ 60 (226)
T cd03234 38 ILGSSGSGKTTLLDAISGRVEGG 60 (226)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99899960999999996789789
No 216
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.83 E-value=0.0029 Score=39.91 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 99889980387859889999999997195
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
+.-||.+||..=.+-..+..|++++..+.
T Consensus 260 ~~DvlIVDEASMVDl~Lm~~LL~Alp~~a 288 (607)
T PRK10875 260 HLDVLVVDEASMIDLPMMSRLIDALPDHA 288 (607)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 88989990733665999999998289998
No 217
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.82 E-value=0.0039 Score=39.15 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
++||-|||||||.|-++++..|-+-
T Consensus 34 ilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 34 ILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 9899978899999999687877775
No 218
>KOG1969 consensus
Probab=95.78 E-value=0.0082 Score=37.28 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.4
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHH
Q ss_conf 889980387859889999999997
Q gi|254781026|r 83 GVLFLDEIPEFSPQTLNALRQPLE 106 (186)
Q Consensus 83 GVLflDE~~e~~~~~l~~L~~~le 106 (186)
-.|.+|||+-..+..++.|+.-++
T Consensus 389 ~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969 389 VCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 359984246872899999999997
No 219
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.78 E-value=0.0047 Score=38.72 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.+.++++|-+
T Consensus 38 ivG~nGsGKSTL~k~l~Gl~~p~~ 61 (279)
T PRK13635 38 IVGHNGSGKSTLAKLLNGLLLPEA 61 (279)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999659999999972888889
No 220
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.0048 Score=38.65 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.+++++.|-+
T Consensus 55 ivG~SGsGKSTLLr~i~GL~~p~~ 78 (269)
T cd03294 55 IMGLSGSGKSTLLRCINRLIEPTS 78 (269)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 998998489999999975999997
No 221
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.0048 Score=38.63 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++++|-+
T Consensus 32 ilGpSG~GKSTllr~i~gl~~p~~ 55 (242)
T cd03295 32 LIGPSGSGKTTTMKMINRLIEPTS 55 (242)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999569999999975999981
No 222
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.75 E-value=0.0046 Score=38.74 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++||-|+||||++|.+++++.|-
T Consensus 36 llGpSG~GKTTlLr~iaGL~~p~ 58 (362)
T TIGR03258 36 LIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999745999999997776777
No 223
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.041 Score=33.21 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH--HHHHHHH--CEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHH
Q ss_conf 9777860599999998874889897--8853230--00000278887565311120203775210011023434568279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL--EESLEVS--MIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~--~e~le~~--~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~ 76 (186)
+.||.|+||..+|+.++..|-=.+. .+.|..+ |....+|. ++.++.... + .++..++-..
T Consensus 29 ~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~---------HPD~~~i~p---e----~~~~~I~Idq 92 (334)
T PRK07993 29 IQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGT---------HPDYYTLTP---E----KGKSSLGVDA 92 (334)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC---------CCCEEEECC---C----CCCCCCCHHH
T ss_conf 47999988999999999998189999999999997899986689---------998477534---2----2345599999
Q ss_pred H--------H---HCCCCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 9--------8---2799889980387859889999999997195
Q gi|254781026|r 77 D--------S---LAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 77 i--------~---lAh~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
| . .+.+-|.+||+...++....|+|+.-||+=-
T Consensus 93 IR~l~~~~~~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEPp 136 (334)
T PRK07993 93 VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP 136 (334)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCC
T ss_conf 99999998436656994799976677759999999998612799
No 224
>KOG1942 consensus
Probab=95.74 E-value=0.042 Score=33.09 Aligned_cols=72 Identities=28% Similarity=0.401 Sum_probs=49.0
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 79988998038785988999999999719523010030789847015675227465887889887643899999999851
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQAR 159 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~r 159 (186)
---||||+||+.-++-.....|+.++|+-.- -++|-|+|---|--.+..+- -+| +-
T Consensus 295 lvPGVLFIDEVhMLDiEcFTyL~kalES~ia--------------PivifAsNrG~~~irGt~d~---~sP-------hG 350 (456)
T KOG1942 295 LVPGVLFIDEVHMLDIECFTYLHKALESPIA--------------PIVIFASNRGMCTIRGTEDI---LSP-------HG 350 (456)
T ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHCCCCC--------------CEEEEECCCCCEEECCCCCC---CCC-------CC
T ss_conf 3676268630132426999999998627787--------------56999627761022177678---787-------88
Q ss_pred CCHHHHHCCCEEEECC
Q ss_conf 2243210042599838
Q gi|254781026|r 160 ISGPLMDRIDIRIAVP 175 (186)
Q Consensus 160 ls~plldR~Dl~v~~~ 175 (186)
++.-||||+-|+-.++
T Consensus 351 ip~dllDRl~Iirt~~ 366 (456)
T KOG1942 351 IPPDLLDRLLIIRTLP 366 (456)
T ss_pred CCHHHHHHEEEEEECC
T ss_conf 9977861266786036
No 225
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=95.73 E-value=0.007 Score=37.67 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.7
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
|.||||+|||+..+.|+.-|
T Consensus 50 LtGPaG~GKTTTI~lLAkeL 69 (490)
T pfam03215 50 LTGPSGCGKSTTVKVLSKEL 69 (490)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 87989988999999999975
No 226
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.0052 Score=38.43 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++||-|+||||++|.++++.+|-
T Consensus 31 iiGpSGsGKSTllr~i~Gl~~p~ 53 (232)
T cd03300 31 LLGPSGCGKTTLLRLIAGFETPT 53 (232)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999983999999997799998
No 227
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=95.65 E-value=0.0058 Score=38.15 Aligned_cols=20 Identities=55% Similarity=0.670 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHCC
Q ss_conf 77786059999999887488
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP 21 (186)
.|+||+||||+|+.+...|.
T Consensus 40 aG~pGSGKSTlA~~l~~~L~ 59 (230)
T PRK09270 40 AGPPGAGKSTLAETLWEALS 59 (230)
T ss_pred ECCCCCCHHHHHHHHHHHHH
T ss_conf 89998899999999999986
No 228
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.0056 Score=38.24 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.+.+++++.|-+
T Consensus 29 ilGpSGsGKSTLl~li~Gl~~p~s 52 (211)
T cd03298 29 IVGPSGSGKSTLLNLIAGFETPQS 52 (211)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999559999999976999885
No 229
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.63 E-value=0.0055 Score=38.27 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++.+|-+
T Consensus 31 i~GpSG~GKSTlLr~iaGl~~p~~ 54 (213)
T cd03301 31 LLGPSGCGKTTTLRMIAGLEEPTS 54 (213)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998809999999976999986
No 230
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.63 E-value=0.0058 Score=38.14 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.+.++++|-+
T Consensus 38 iiG~nGsGKSTLl~~l~GLl~p~~ 61 (287)
T PRK13637 38 LIGHTGSGKSTLIQHLNGLLKPTS 61 (287)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999399999999973998887
No 231
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.0057 Score=38.19 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.+.++++|-+
T Consensus 31 iiG~SGsGKSTll~~i~gL~~p~~ 54 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGLLRPDS 54 (235)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999729999999975999898
No 232
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=95.61 E-value=0.025 Score=34.42 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCC------CCEEECCCCCCCHHHCCCCCCCCCH
Q ss_conf 9777860599999998874889897885323000000278887565311------1202037752100110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQ------NRPFRSPHHSVTIAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~------~~p~~~~~~~~~~~~l~gg~~~~~p 74 (186)
++|++|.||||+++++..-=|+..+.+.-.+--++-.+........+.. ..|++........ ...--
T Consensus 66 lvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~~~~~~~~~~-------~~~~~ 138 (302)
T pfam05621 66 LVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPLRPRPRLPEM-------EQLAL 138 (302)
T ss_pred EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH-------HHHHH
T ss_conf 87079887899999999967998786667021899976999886899999999837877888778999-------99999
Q ss_pred HHHHHCCCCEEEEECHHHCC-------HHHHHHHHHHHHCCCEEEHHCCE
Q ss_conf 79982799889980387859-------88999999999719523010030
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFS-------PQTLNALRQPLETGECIIARANR 117 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~-------~~~l~~L~~~le~g~v~i~R~g~ 117 (186)
..+..-.=-+|.|||++.+= +.++|.|+--..+-+|.+.-.|.
T Consensus 139 ~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~IpiV~vGt 188 (302)
T pfam05621 139 ALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPLVGVGT 188 (302)
T ss_pred HHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99997498789985436560486889999999999986365878699531
No 233
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.60 E-value=0.0059 Score=38.10 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.++++++|-+
T Consensus 35 iiG~sGsGKTTll~~i~Gl~~p~~ 58 (218)
T cd03255 35 IVGPSGSGKSTLLNILGGLDRPTS 58 (218)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999869999999966999996
No 234
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.59 E-value=0.0059 Score=38.10 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.++++.+|-+
T Consensus 29 l~GpsGaGKTTLl~~iaGl~~p~~ 52 (352)
T PRK11144 29 IFGRSGAGKTSLINLISGLTRPQK 52 (352)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999629999999976899996
No 235
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.58 E-value=0.0055 Score=38.30 Aligned_cols=110 Identities=25% Similarity=0.281 Sum_probs=57.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH-HCEEECCC---CCCCCCCCC-------------------CCCEEECCC
Q ss_conf 9777860599999998874889897885323-00000027---888756531-------------------112020377
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEV-SMIYSISG---HSSHEYSFI-------------------QNRPFRSPH 57 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~-~~i~s~~g---~~~~~~~~~-------------------~~~p~~~~~ 57 (186)
++||-|+|||||.+-|.+.+.|.+-.-..-. .++.+..- .......++ ..--|....
T Consensus 353 iiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~ 432 (530)
T COG0488 353 IVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED 432 (530)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEEEEEEEHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 98999877899999985213567725995796789998700310276677999998646543289999999984998679
Q ss_pred CCCCHHHCCCCCCC-CCHHHHHHCCCCEEEEEC-HHHCCHHHHHHHHHHHHCCCE
Q ss_conf 52100110234345-682799827998899803-878598899999999971952
Q gi|254781026|r 58 HSVTIAALIGGGLQ-VLPGEDSLAHNGVLFLDE-IPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 58 ~~~~~~~l~gg~~~-~~pG~i~lAh~GVLflDE-~~e~~~~~l~~L~~~le~g~v 110 (186)
.......+-||+.. +.=..+.+....||.||| -|.++-..+++|-+++.+-.=
T Consensus 433 ~~~~v~~LSGGEk~Rl~La~ll~~~pNvLlLDEPTNhLDi~s~eaLe~aL~~f~G 487 (530)
T COG0488 433 QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEG 487 (530)
T ss_pred HCCCHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 6395222587799999999985669978997289876798899999999985898
No 236
>pfam00406 ADK Adenylate kinase.
Probab=95.58 E-value=0.0071 Score=37.65 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
++||||+||+|.|+.|+.-+
T Consensus 1 i~G~PGsGKgTqa~~La~~~ 20 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKY 20 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHH
T ss_conf 91889898599999999985
No 237
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.58 E-value=0.05 Score=32.68 Aligned_cols=77 Identities=32% Similarity=0.425 Sum_probs=52.2
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
--|||||||..-++=....-|-.+||+--. -++|.|+|---|--.|.. .-+| +-+
T Consensus 291 VpGVLFIDEvHmLDIE~FsFlnrAlEse~a--------------PIii~AtNRG~~kiRGTd----~~sP-------hGI 345 (450)
T COG1224 291 VPGVLFIDEVHMLDIECFSFLNRALESELA--------------PIIILATNRGMTKIRGTD----IESP-------HGI 345 (450)
T ss_pred ECCEEEEECHHHHHHHHHHHHHHHHHCCCC--------------CEEEEECCCCEEEECCCC----CCCC-------CCC
T ss_conf 134289732134557899999987631467--------------579997177500121667----7688-------889
Q ss_pred CHHHHHCCCEEEECC-CCCHHHH
Q ss_conf 243210042599838-8566888
Q gi|254781026|r 161 SGPLMDRIDIRIAVP-SRTHIRS 182 (186)
Q Consensus 161 s~plldR~Dl~v~~~-~~~~~~~ 182 (186)
+.-||||.=|+-..| ...++++
T Consensus 346 P~DlLDRllII~t~py~~~Eire 368 (450)
T COG1224 346 PLDLLDRLLIISTRPYSREEIRE 368 (450)
T ss_pred CHHHHHHEEEEECCCCCHHHHHH
T ss_conf 87666225677447798899999
No 238
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.58 E-value=0.0056 Score=38.24 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
|+||||+||+|.|+.|+.-+
T Consensus 4 l~G~PGsGKgTqa~~La~~~ 23 (194)
T cd01428 4 LLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 98999998799999999997
No 239
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.57 E-value=0.0061 Score=38.05 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++.+|-+
T Consensus 55 lvGpSGsGKSTLLr~i~GL~~pt~ 78 (382)
T TIGR03415 55 LMGLSGSGKSSLLRAVNGLNPVSR 78 (382)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999997349999999975999885
No 240
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.0063 Score=37.96 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.++++++|-+
T Consensus 35 iiGpsGsGKSTLl~~i~Gl~~p~~ 58 (220)
T cd03293 35 LVGPSGCGKSTLLRIIAGLERPTS 58 (220)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999579999999975999887
No 241
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.52 E-value=0.0061 Score=38.04 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 37 iiG~nGaGKSTLl~~i~G~~~p~~ 60 (258)
T PRK11701 37 IVGESGSGKTTLLNALSARLAPDA 60 (258)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 988899889999999856788888
No 242
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.50 E-value=0.0067 Score=37.78 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-||||||++|.++++..|-+
T Consensus 37 llGpSG~GKTTlLr~iaGl~~p~~ 60 (351)
T PRK11432 37 LLGPSGCGKTTVLRLVAGLEKPTS 60 (351)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999996499999999976999883
No 243
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.49 E-value=0.0063 Score=37.95 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=24.3
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHHH
Q ss_conf 97778605999999988748--89897885323
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLEV 31 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le~ 31 (186)
|+|.||+|||++.|.|+..| |-++-++.+|.
T Consensus 9 LiG~mGsGKstvgk~LA~~l~~~fiD~D~~Ie~ 41 (172)
T PRK05057 9 LVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK 41 (172)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH
T ss_conf 889999988999999999969996878099999
No 244
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.007 Score=37.69 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++..|-+
T Consensus 33 iiGpSGsGKSTll~~i~Gl~~p~~ 56 (239)
T cd03296 33 LLGPSGSGKTTLLRLIAGLERPDS 56 (239)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999779999999976999986
No 245
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.47 E-value=0.0064 Score=37.92 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-||||||++|.++++-.|-+
T Consensus 36 lLGPSGcGKTTlLR~IAGfe~p~~ 59 (352)
T COG3842 36 LLGPSGCGKTTLLRMIAGFEQPSS 59 (352)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 989988888999999967778888
No 246
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.007 Score=37.67 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++||-|+|||||++.+.+++.|
T Consensus 39 iiG~nGsGKSTL~~~l~Gll~P 60 (283)
T PRK13640 39 LIGHNGSGKSTISKLINGLLLP 60 (283)
T ss_pred EECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999998799999999640378
No 247
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.0069 Score=37.70 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++++|-+
T Consensus 35 llGpsG~GKTTllr~iaGl~~p~~ 58 (358)
T PRK11650 35 LVGPSGCGKSTLLRMVAGLERITS 58 (358)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999986369999999976999886
No 248
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.46 E-value=0.007 Score=37.68 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++..|-+
T Consensus 35 llGpSG~GKtTlLr~iaGl~~p~~ 58 (353)
T TIGR03265 35 LLGPSGCGKTTLLRIIAGLERQTA 58 (353)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999995359999999976999987
No 249
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.45 E-value=0.0066 Score=37.81 Aligned_cols=24 Identities=42% Similarity=0.683 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.+.+++||-+
T Consensus 30 liGpNGaGKSTllk~i~Gl~~p~~ 53 (213)
T cd03235 30 IVGPNGAGKSTLLKAILGLLKPTS 53 (213)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999869999999976878897
No 250
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.45 E-value=0.0073 Score=37.57 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 36 iiG~sGsGKSTLl~~i~Gl~~p~~ 59 (228)
T cd03257 36 LVGESGSGKSTLARAILGLLKPTS 59 (228)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999869999999972898788
No 251
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=95.43 E-value=0.036 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=28.1
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 2799889980387859889999999997195
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
.+.+-|.+||....|+...-|+||.-||+=-
T Consensus 117 ~~~~rVviI~~Ae~mn~~AANALLKtLEEPp 147 (216)
T TIGR00678 117 ESGRRVVIIEDAERMNEAAANALLKTLEEPP 147 (216)
T ss_pred CCCCEEEEECCHHHCCHHHHHHHHHHEECCC
T ss_conf 1475179976732325898986510101279
No 252
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.41 E-value=0.0073 Score=37.59 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHH
Q ss_conf 97778605999999988748--8989788532
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLE 30 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le 30 (186)
|+|.||+|||+++|.|+..| |-++-++.+|
T Consensus 9 liG~~GsGKTtvgk~LA~~L~~~fiD~D~~Ie 40 (175)
T PRK00131 9 LIGMMGAGKSTIGRLLAKRLGYEFIDTDHLIE 40 (175)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 88899999899999999995969023988999
No 253
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.0078 Score=37.42 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+||||+++.+.++++|-+
T Consensus 38 iiG~sGsGKSTL~~~l~Gl~~~~~ 61 (277)
T PRK13642 38 IIGQNGSGKSTTARLIDGLFEEFE 61 (277)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999689999999963899888
No 254
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.0077 Score=37.44 Aligned_cols=24 Identities=38% Similarity=0.726 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++++|-+
T Consensus 31 ivGpSG~GKSTllr~i~Gl~~p~~ 54 (178)
T cd03229 31 LLGPSGSGKSTLLRCIAGLEEPDS 54 (178)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999839999999985999996
No 255
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.0077 Score=37.45 Aligned_cols=24 Identities=50% Similarity=0.862 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 32 iiGpsGsGKSTLl~~i~gl~~p~~ 55 (241)
T cd03256 32 LIGPSGAGKSTLLRCLNGLVEPTS 55 (241)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998339999999974999985
No 256
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.39 E-value=0.036 Score=33.49 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=72.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-HH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799-82
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-SL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~l 79 (186)
|.|..|+|||-+.|++-.-. ++... .++. +......+...+. +.+ .+
T Consensus 90 LwGaRGtGKSSLVKA~~~e~-----------------~~~gl---rLVE----V~k~dl~~Lp~l~--------~~Lr~~ 137 (287)
T COG2607 90 LWGARGTGKSSLVKALLNEY-----------------ADEGL---RLVE----VDKEDLATLPDLV--------ELLRAR 137 (287)
T ss_pred EECCCCCCHHHHHHHHHHHH-----------------HHCCC---EEEE----ECHHHHHHHHHHH--------HHHHCC
T ss_conf 76377777479999999998-----------------74177---0799----7688886579999--------999618
Q ss_pred CCCCEEEEECHH-HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCC--CCCCCCCCCCCCCHHHHHHH
Q ss_conf 799889980387-859889999999997195230100307898470156752274658--87889887643899999999
Q gi|254781026|r 80 AHNGVLFLDEIP-EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRC--GMSNKDENVCIRGPRCATEY 156 (186)
Q Consensus 80 Ah~GVLflDE~~-e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpc--G~~~~~~~~c~c~~~~~~~Y 156 (186)
..+=|+|.|.+. |-.+..-.+|--+||-+. ..-|++.++.||+|-.+- .++.+....- -....-..-
T Consensus 138 ~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v---------e~rP~NVl~YATSNRRHLl~e~~~dn~~~~-~eih~~eav 207 (287)
T COG2607 138 PEKFILFCDDLSFEEGDDAYKALKSALEGGV---------EGRPANVLFYATSNRRHLLPEDMKDNEGST-GEIHPSEAV 207 (287)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHCCCC---------CCCCCEEEEEEECCCCCCCCHHHHHCCCCC-CCCCHHHHH
T ss_conf 8608999567777778138999999853885---------568870799971587533627664277840-235806778
Q ss_pred HHHCCHHHHHCCCEEEECCCCCH
Q ss_conf 85122432100425998388566
Q gi|254781026|r 157 QARISGPLMDRIDIRIAVPSRTH 179 (186)
Q Consensus 157 ~~rls~plldR~Dl~v~~~~~~~ 179 (186)
..|+| |=|||.|.+..++-+.
T Consensus 208 eEKlS--lSDRFGLwL~F~~~~Q 228 (287)
T COG2607 208 EEKLS--LSDRFGLWLSFYPCDQ 228 (287)
T ss_pred HHHHC--HHHHCCEEECCCCCCH
T ss_conf 77625--4642340450368788
No 257
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.0076 Score=37.47 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 30 iiG~nGaGKSTLl~~i~Gll~p~s 53 (233)
T PRK10771 30 ILGPSGAGKSTLLNLIAGFLTPAS 53 (233)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999819999999965999985
No 258
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.0086 Score=37.16 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.|.+.++++|.+
T Consensus 38 iiGpNGaGKSTLlk~i~Gll~p~~ 61 (265)
T PRK10253 38 IIGPNGCGKSTLLRTLSRLMTPAH 61 (265)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999988399999999974988885
No 259
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.38 E-value=0.0071 Score=37.64 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
++||-|+|||||+|.+.++++|-+-
T Consensus 31 l~G~NGsGKSTLlk~i~Gl~~p~sG 55 (201)
T cd03231 31 VTGPNGSGKTTLLRILAGLSPPLAG 55 (201)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCE
T ss_conf 9999999999999999667788852
No 260
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.38 E-value=0.008 Score=37.35 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 25 iiG~sGsGKSTLl~~l~GLl~P~~ 48 (276)
T PRK13634 25 IIGHTGSGKSTLLQHLNGLLKPTK 48 (276)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999699999999974999887
No 261
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=95.37 E-value=0.0083 Score=37.26 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
|+||-||||||+++-||++=-
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~ 21 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ 21 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCC
T ss_conf 978888747999999834587
No 262
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.37 E-value=0.0078 Score=37.39 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++.+|-+
T Consensus 34 llGpsG~GKSTllr~i~Gl~~p~~ 57 (369)
T PRK11000 34 FVGPSGCGKSTLLRMIAGLEDITS 57 (369)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999997369999999977999995
No 263
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.37 E-value=0.008 Score=37.35 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++.+|-+
T Consensus 33 llGpSGsGKSTLlr~iaGL~~p~s 56 (352)
T PRK10851 33 LLGPSGSGKTTLLRIIAGLEHQTS 56 (352)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998469999999976999995
No 264
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.37 E-value=0.008 Score=37.35 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.+.++.+|-+
T Consensus 59 ivG~SGsGKSTLlr~i~gL~~Pt~ 82 (400)
T PRK10070 59 IMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998469999999975999898
No 265
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.0081 Score=37.30 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+|||||++.+.++++|-+
T Consensus 38 iiG~nGsGKSTLl~~l~GLl~p~~ 61 (286)
T PRK13646 38 IVGQTGSGKSTLIQNINALLKPTT 61 (286)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999819999999970788888
No 266
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=95.36 E-value=0.0078 Score=37.40 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=59.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC---CC-HHHCCCCC---CCCC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752---10-01102343---4568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS---VT-IAALIGGG---LQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~---~~-~~~l~gg~---~~~~ 73 (186)
+.|||||||||..+-|+.+|- ....|++--....+..... ...+...--|..-... .+ ..-+.+.. ....
T Consensus 123 i~GPsGCgKsT~~k~LsKelg-~~~~ew~Np~~~~~~~n~~--k~~~~~~~~f~~~PY~sq~e~f~efll~a~kY~~lQ~ 199 (670)
T TIGR00602 123 ITGPSGCGKSTTIKILSKELG-IKVQEWLNPVLLKEQKNDE--KDTLSLESKFSRFPYLSQIEVFSEFLLRATKYNKLQK 199 (670)
T ss_pred EECCCCCCHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCHH--HHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 417558844789999988864-4565540787888885124--4442125402216763145546787642123466642
Q ss_pred HHHHHHCCCCEEEEECHH---HCCHHHH-HHHHHHHHCCCEEEH
Q ss_conf 279982799889980387---8598899-999999971952301
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIP---EFSPQTL-NALRQPLETGECIIA 113 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~---e~~~~~l-~~L~~~le~g~v~i~ 113 (186)
-|.=...+.-+.||||++ .|..+.. ..++++|....+...
T Consensus 200 lG~~~~~~kk~Il~e~lPhln~F~~d~~rr~~~~vlr~~~~~~g 243 (670)
T TIGR00602 200 LGDDLQTDKKLILVEDLPHLNKFYRDLDRRALREVLRTKYVSEG 243 (670)
T ss_pred CCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 14110247545772137640221366126899999999862378
No 267
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.35 E-value=0.0075 Score=37.50 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 38 i~G~sGsGKSTLlk~i~gl~~p~~ 61 (225)
T PRK10247 38 ITGPSGCGKSTLLKIVASLISPTS 61 (225)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999999999999964668887
No 268
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=95.33 E-value=0.0073 Score=37.58 Aligned_cols=49 Identities=24% Similarity=0.244 Sum_probs=31.0
Q ss_pred HCCCCCCCCC--HHHHHHCCCCEEEEEC-HHHCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 1023434568--2799827998899803-878598899999999971952301
Q gi|254781026|r 64 ALIGGGLQVL--PGEDSLAHNGVLFLDE-IPEFSPQTLNALRQPLETGECIIA 113 (186)
Q Consensus 64 ~l~gg~~~~~--pG~i~lAh~GVLflDE-~~e~~~~~l~~L~~~le~g~v~i~ 113 (186)
.+-||.+.-. +=+++. .=-||.||| |.=++..+...||.=|-+=.-.|.
T Consensus 134 QLSGGQrQRvALARALAv-~P~vLLLDEPFgALDAkvRk~LR~WLR~LH~e~~ 185 (241)
T TIGR00968 134 QLSGGQRQRVALARALAV-EPQVLLLDEPFGALDAKVRKELRAWLRKLHDEVH 185 (241)
T ss_pred CCCCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 035733789999988633-9815762087145428999999999987403056
No 269
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.33 E-value=0.0084 Score=37.22 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+|||||++.+.++++|-+
T Consensus 41 ivG~nGsGKSTLlk~l~Gll~p~~ 64 (273)
T PRK13632 41 ILGHNGSGKSTISKILTGLLKPQS 64 (273)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999869999999973877888
No 270
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.0084 Score=37.20 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.++++.+|-+
T Consensus 28 iiGpSGsGKSTll~~i~GL~~p~s 51 (214)
T cd03297 28 IFGASGAGKSTLLRCIAGLEKPDG 51 (214)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999997359999999984999996
No 271
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.32 E-value=0.0086 Score=37.15 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++||-|+|||||++.+.++..|-
T Consensus 31 ivGpSGsGKSTLL~~i~gL~~p~ 53 (213)
T cd03262 31 IIGPSGSGKSTLLRCINLLEEPD 53 (213)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999844999999998199998
No 272
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.31 E-value=0.0085 Score=37.20 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++++|-+
T Consensus 48 llGpSGsGKSTLlr~iaGl~~p~s 71 (378)
T PRK09452 48 LLGPSGCGKTTVLRLIAGFETPDS 71 (378)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 998999769999999976999984
No 273
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.30 E-value=0.0085 Score=37.17 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||+|.+.++++|-+
T Consensus 33 l~G~NGaGKTTLlk~i~Gl~~p~~ 56 (206)
T PRK13539 33 LTGPNGSGKTTLLRLLAGLLPPAA 56 (206)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 989999989999999958878885
No 274
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.009 Score=37.05 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+||||+++.+.++++|-+
T Consensus 35 ivG~nGsGKSTL~~~l~Gll~p~~ 58 (276)
T PRK13650 35 IIGHNGSGKSTTVRLIDGLLEAES 58 (276)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999879999999973889886
No 275
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.28 E-value=0.0082 Score=37.29 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHH
Q ss_conf 97778605999999988748--898978853
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESL 29 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~l 29 (186)
|+||||+||+|.|+.|+.-+ |.++--+.+
T Consensus 5 llGpPGsGKgT~a~~l~~~~~~~hiStGdll 35 (225)
T PTZ00088 5 LFGAPGVGKGTFAEILSKKEKLKHINMGNIL 35 (225)
T ss_pred EECCCCCCHHHHHHHHHHHHCCEEECHHHHH
T ss_conf 9899999879999999998799068789999
No 276
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.014 Score=35.85 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-HHHHHHHH--CEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH
Q ss_conf 977786059999999887488989-78853230--000002788875653111202037752100110234345682799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-LEESLEVS--MIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-~~e~le~~--~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i 77 (186)
+.||+|+||+.+|+.++.-|-=-+ ..+.|..+ +....+|.-+. ...+ .|- ....+++... .+...--.-
T Consensus 30 ~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD-~~~i--~pe-~~~k~I~vd~----IR~l~~~~~ 101 (319)
T PRK06090 30 LQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPD-LHVI--KPE-KEGKSITVEQ----IRQCNRLAQ 101 (319)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCC-CEEE--ECC-CCCCCCCHHH----HHHHHHHHH
T ss_conf 6799985799999999999808999999887787799987589998-2366--123-3567687999----999999975
Q ss_pred ---HHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE
Q ss_conf ---827998899803878598899999999971952
Q gi|254781026|r 78 ---SLAHNGVLFLDEIPEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 78 ---~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v 110 (186)
.....-|.+||+...++....|+|+.-||+=--
T Consensus 102 ~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~ 137 (319)
T PRK06090 102 ESSQLGGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred HCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCC
T ss_conf 452106936999814443499999999998428998
No 277
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.27 E-value=0.0088 Score=37.11 Aligned_cols=24 Identities=29% Similarity=0.575 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.|.++++++|-+
T Consensus 30 liGpNGaGKSTLlk~l~Gll~p~~ 53 (246)
T cd03237 30 ILGPNGIGKTTFIKMLAGVLKPDE 53 (246)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 997999769999999977878886
No 278
>PRK12377 putative replication protein; Provisional
Probab=95.26 E-value=0.0078 Score=37.39 Aligned_cols=124 Identities=20% Similarity=0.187 Sum_probs=60.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-HH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799-82
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-SL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~l 79 (186)
|+||||||||.||-++.--+ +. .|. ...++.... .......-...+ ....-.+ .+
T Consensus 106 f~G~pGtGKTHLA~AIg~~a--------~~-------~G~---sVlF~t~~d-----Lv~~L~~a~~~g-~~~~k~l~~l 161 (248)
T PRK12377 106 FSGKPGTGKNHLAAAIGNRL--------LA-------KGR---SVIVVTVPD-----VMSRLHESYDNG-QSGEKFLQEL 161 (248)
T ss_pred EECCCCCCHHHHHHHHHHHH--------HH-------CCC---EEEEEEHHH-----HHHHHHHHHHCC-CCHHHHHHHH
T ss_conf 98999987889999999999--------98-------799---699988999-----999999999848-5099999997
Q ss_pred CCCCEEEEECHH--HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 799889980387--859889999999997195230100307898470156752274658878898876438999999998
Q gi|254781026|r 80 AHNGVLFLDEIP--EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ 157 (186)
Q Consensus 80 Ah~GVLflDE~~--e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~ 157 (186)
+.--+|.|||++ .+++...+.|.|..+...- ..-.++.++|--..++ -
T Consensus 162 ~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~------------~~ks~IiTTNL~f~ew------------------~ 211 (248)
T PRK12377 162 CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTA------------SMRSVGMLTNLNHEAM------------------S 211 (248)
T ss_pred HCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHH------------CCCCEEEECCCCHHHH------------------H
T ss_conf 338989860005788986799999999999985------------5798689758997799------------------8
Q ss_pred HHCCHHHHHCCC----EEEECCCCC
Q ss_conf 512243210042----599838856
Q gi|254781026|r 158 ARISGPLMDRID----IRIAVPSRT 178 (186)
Q Consensus 158 ~rls~plldR~D----l~v~~~~~~ 178 (186)
.-+..+++||+- ..|.+.--+
T Consensus 212 ~ilgdailDRL~~h~~~~i~f~GeS 236 (248)
T PRK12377 212 TLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8875999999986693499861731
No 279
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.23 E-value=0.0086 Score=37.16 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=17.8
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
|+||||+||+|.|+.|+.-+
T Consensus 5 llG~PGsGKgTqa~~la~~~ 24 (215)
T PRK00279 5 LLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 98999998799999999986
No 280
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.22 E-value=0.0093 Score=36.97 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++||-|+|||||+|.+.+++|+-
T Consensus 32 liG~nGaGKSTLl~~i~G~l~~~ 54 (273)
T PRK13547 32 LLGRNGAGKSTLLKVLAGELTGG 54 (273)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999976999999995678876
No 281
>PRK13947 shikimate kinase; Provisional
Probab=95.22 E-value=0.0077 Score=37.44 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHHHH
Q ss_conf 97778605999999988748--898978853230
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLEVS 32 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le~~ 32 (186)
|+|.||+|||++.|.|+..| |-++-++.+|..
T Consensus 6 LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie~~ 39 (171)
T PRK13947 6 LIGFMGTGKTTVGKKVATTLSFGFIDTDKEIEKM 39 (171)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHH
T ss_conf 9799999889999999999796989874999988
No 282
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.22 E-value=0.0087 Score=37.13 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.|.++++++|-+
T Consensus 42 l~GpNGaGKTTLlr~l~Gl~~p~~ 65 (214)
T PRK13543 42 VQGDNGAGKTTLLRVLAGLLHVES 65 (214)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999879999999976977884
No 283
>PRK02496 adk adenylate kinase; Provisional
Probab=95.19 E-value=0.0091 Score=37.00 Aligned_cols=20 Identities=45% Similarity=0.722 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
|+||||+||+|.|+.|+.-+
T Consensus 6 llG~PGSGKgTqa~~L~~~~ 25 (185)
T PRK02496 6 FLGPPGAGKGTQAVVLAEHL 25 (185)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 97999999899999999996
No 284
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.19 E-value=0.0093 Score=36.96 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.+.++++|-+
T Consensus 39 iiGpnGsGKSTLlk~i~Gl~~p~~ 62 (269)
T PRK11831 39 IMGPSGIGKTTLLRLIGGQIAPDH 62 (269)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 993999759999999967988898
No 285
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=95.19 E-value=0.0086 Score=37.15 Aligned_cols=20 Identities=45% Similarity=0.499 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
+.|.||+|||||..+|-..|
T Consensus 43 ~TG~PGaGKSTl~~~l~~~l 62 (333)
T TIGR00750 43 ITGVPGAGKSTLVEKLIMEL 62 (333)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 64688885777999998999
No 286
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.18 E-value=0.011 Score=36.44 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=24.7
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHHHHC
Q ss_conf 97778605999999988748--8989788532300
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLEVSM 33 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le~~~ 33 (186)
|+|++|+||||+.|.++.-| |-++-++.+|...
T Consensus 7 LiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~ 41 (172)
T COG0703 7 LIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT 41 (172)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 97179997768999999981998022469999997
No 287
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.0089 Score=37.07 Aligned_cols=24 Identities=46% Similarity=0.690 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|++|+||||+++-+.+|++|-+
T Consensus 35 i~G~nGsGKSTL~~~l~GLl~p~~ 58 (235)
T COG1122 35 LIGPNGSGKSTLLKLLNGLLKPTS 58 (235)
T ss_pred EECCCCCCHHHHHHHHCCCCCCCC
T ss_conf 988999889999999537676889
No 288
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.0097 Score=36.86 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+||||+++.+.+++|+-
T Consensus 34 iiG~SGsGKStl~k~llgll~~~ 56 (254)
T PRK10418 34 LVGGSGSGKSLTCAAALGILPAG 56 (254)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999878999999995799889
No 289
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=95.17 E-value=0.0096 Score=36.87 Aligned_cols=17 Identities=41% Similarity=0.948 Sum_probs=9.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97778605999999988
Q gi|254781026|r 1 MIGPPGARKSMLASCLP 17 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~ 17 (186)
|.||||+|||.||++++
T Consensus 580 l~GPPGtGktllakava 596 (980)
T TIGR01243 580 LFGPPGTGKTLLAKAVA 596 (980)
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 74689861688888774
No 290
>KOG2170 consensus
Probab=95.16 E-value=0.023 Score=34.64 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=63.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|=|.+||||+-.++-++.=+ ++ .|. .++-...-......||....+..-. .-....-|.++..
T Consensus 115 fHG~tGTGKN~Va~iiA~n~--------------~~-~Gl-~S~~V~~fvat~hFP~~~~ie~Yk~-eL~~~v~~~v~~C 177 (344)
T KOG2170 115 FHGWTGTGKNYVAEIIAENL--------------YR-GGL-RSPFVHHFVATLHFPHASKIEDYKE-ELKNRVRGTVQAC 177 (344)
T ss_pred ECCCCCCCHHHHHHHHHHHH--------------HH-CCC-CCHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHHHHC
T ss_conf 30899875648999999998--------------75-112-5626887655415997678999999-9999999999855
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEE
Q ss_conf 99889980387859889999999997195230100307898470156752
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa 130 (186)
++.+..+||.+++++.+++.|.--|+--.. + . ..-...|-|+++..
T Consensus 178 ~rslFIFDE~DKmp~gLld~lkpfLdyyp~-v--~-gv~frkaIFIfLSN 223 (344)
T KOG2170 178 QRSLFIFDEVDKLPPGLLDVLKPFLDYYPQ-V--S-GVDFRKAIFIFLSN 223 (344)
T ss_pred CCCEEEECHHHHCCHHHHHHHHHHHCCCCC-C--C-CCCCCCEEEEEECC
T ss_conf 775487310543587699987666304632-1--3-55455148999717
No 291
>PRK13544 consensus
Probab=95.15 E-value=0.0087 Score=37.12 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.|.++++.||-+
T Consensus 32 l~G~NGsGKSTLl~~i~Gl~~p~~ 55 (208)
T PRK13544 32 VIGNNGSGKTSLLRLLAGLIPITH 55 (208)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999989999999958806897
No 292
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.14 E-value=0.01 Score=36.70 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
++|+-|+|||||++.+.++++|-+.
T Consensus 42 IiG~nGsGKSTL~~~l~Gll~p~~G 66 (289)
T PRK13645 42 VIGTTGSGKSTMIQLTNGLIISETG 66 (289)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 9999995799999999659889998
No 293
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.14 E-value=0.01 Score=36.69 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+|||||++.+.+++.|-+
T Consensus 33 iiG~nGsGKSTL~~~l~Gll~P~~ 56 (274)
T PRK13644 33 IIGKNGSGKSTLALHLNGLLRPQK 56 (274)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999809999999970685888
No 294
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.14 E-value=0.0098 Score=36.81 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+.+.++++++|-+
T Consensus 55 llG~NGaGKSTLlk~I~Gl~~P~~ 78 (264)
T PRK13546 55 LVGINGSGKSTLSNIIGGSLSPTV 78 (264)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 998998619999999967988887
No 295
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.14 E-value=0.01 Score=36.74 Aligned_cols=24 Identities=46% Similarity=0.850 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||+|.+.++++|-+
T Consensus 33 liGpNGaGKSTLlk~i~Gl~~p~s 56 (255)
T PRK11231 33 LIGPNGCGKSTLLKCFARLLTPQS 56 (255)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999819999999975988886
No 296
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.12 E-value=0.0099 Score=36.81 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||+|.++++++|-+
T Consensus 32 l~G~NGaGKSTLl~~l~Gl~~p~~ 55 (204)
T PRK13538 32 IEGPNGAGKTSLLRILAGLARPDA 55 (204)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999859999999976888887
No 297
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.10 E-value=0.0092 Score=36.98 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 977786059999999887
Q gi|254781026|r 1 MIGPPGARKSMLASCLPS 18 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~ 18 (186)
+.|+||+||||+++.++-
T Consensus 5 i~G~aG~GKTtll~kl~~ 22 (165)
T pfam05729 5 LQGEAGSGKTTLLQKLAL 22 (165)
T ss_pred EECCCCCCHHHHHHHHHH
T ss_conf 982798989999999999
No 298
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.0097 Score=36.86 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++||-|+|||||.+.|++++++-
T Consensus 38 llG~nGsGKSTLl~~l~G~~~~~ 60 (202)
T cd03233 38 VLGRPGSGCSTLLKALANRTEGN 60 (202)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99899998899999983787898
No 299
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.08 E-value=0.011 Score=36.61 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 32 liG~sGsGKSTLl~~l~gl~~p~~ 55 (248)
T PRK11264 32 IIGPSGSGKTTLLRCINLLEQPEA 55 (248)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999809999999975899998
No 300
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.08 E-value=0.01 Score=36.78 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++||-|+|||||++.+.++++|-
T Consensus 31 iiG~nGaGKSTLl~~i~Gl~~p~ 53 (205)
T cd03226 31 LTGKNGAGKTTLAKILAGLIKES 53 (205)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98899998999999995685777
No 301
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=95.05 E-value=0.011 Score=36.46 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+||||++|.+.++.+|-
T Consensus 43 ivGeSGsGKSTL~r~i~gl~~p~ 65 (266)
T PRK10419 43 LLGRSGCGKSTLARLLVGLESPS 65 (266)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999977999999996699999
No 302
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.05 E-value=0.011 Score=36.47 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
++||-|+||||++|.+.++++|-+-
T Consensus 32 liG~nGsGKSTll~~i~Gl~~~~~G 56 (240)
T PRK09493 32 IIGPSGSGKSTLLRCINKLEEITSG 56 (240)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 9999998099999999638999997
No 303
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=95.05 E-value=0.011 Score=36.63 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+.+.+.+++||-+
T Consensus 34 liGpNGaGKSTLl~~i~Gl~~~~~ 57 (241)
T PRK10895 34 LLGPNGAGKTTTFYMVVGIVPRDA 57 (241)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 988999869999999967888887
No 304
>KOG0744 consensus
Probab=95.04 E-value=0.01 Score=36.70 Aligned_cols=127 Identities=23% Similarity=0.274 Sum_probs=62.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-----HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 977786059999999887488989-----788532300000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-----LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
|-||||||||.|.|+++.-|---+ ....+|+.+ ||...+.-+..+- -.+.++ -+--
T Consensus 182 lhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins-hsLFSKWFsESgK-------------lV~kmF-----~kI~ 242 (423)
T KOG0744 182 LHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS-HSLFSKWFSESGK-------------LVAKMF-----QKIQ 242 (423)
T ss_pred EECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEH-HHHHHHHHHHHHH-------------HHHHHH-----HHHH
T ss_conf 85799988227999998751465237644406999704-6788988712113-------------899999-----9999
Q ss_pred HHHHCCCC--EEEEECHHHCCH---------------HHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCC
Q ss_conf 99827998--899803878598---------------8999999999719523010030789847015675227465887
Q gi|254781026|r 76 EDSLAHNG--VLFLDEIPEFSP---------------QTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGM 138 (186)
Q Consensus 76 ~i~lAh~G--VLflDE~~e~~~---------------~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~ 138 (186)
++..-.+. .+.|||+.-+.- .++++|+.-|..= -++ .+++.++|+|--
T Consensus 243 ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl----------K~~-~NvliL~TSNl~---- 307 (423)
T KOG0744 243 ELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL----------KRY-PNVLILATSNLT---- 307 (423)
T ss_pred HHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH----------CCC-CCEEEEECCCHH----
T ss_conf 99717896899980787888999875413799821899999999989986----------047-977999626267----
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf 889887643899999999851224321004259983885668
Q gi|254781026|r 139 SNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 139 ~~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
..|--++.||-||...|...+..
T Consensus 308 -------------------~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744 308 -------------------DSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred -------------------HHHHHHHHHHHHHEEECCCCCHH
T ss_conf -------------------77788861175421103896399
No 305
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.02 E-value=0.012 Score=36.37 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 41 ivG~sGsGKSTLl~~i~Gl~~p~~ 64 (228)
T PRK10584 41 LIGESGSGKSTLLAILAGLDDGSS 64 (228)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998589999999966999996
No 306
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.012 Score=36.37 Aligned_cols=24 Identities=46% Similarity=0.548 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.+.++++|-+
T Consensus 37 iiG~NGaGKSTLl~~i~Gll~p~~ 60 (285)
T PRK13636 37 ILGGNGAGKSTLFQNLNGILKPSS 60 (285)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999809999999965988886
No 307
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.98 E-value=0.012 Score=36.37 Aligned_cols=24 Identities=46% Similarity=0.524 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.+.+.++++|-+
T Consensus 53 ilG~NGaGKSTLl~~i~Gl~~p~~ 76 (224)
T cd03220 53 LIGRNGAGKSTLLRLLAGIYPPDS 76 (224)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 997999819999999975877787
No 308
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.98 E-value=0.011 Score=36.48 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||+|.++++++|-.
T Consensus 32 l~G~NGaGKSTLlkli~Gl~~p~~ 55 (200)
T PRK13540 32 LKGSNGAGKTTLLKLIAGLLNPEK 55 (200)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 988999879999999977858898
No 309
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.98 E-value=0.012 Score=36.26 Aligned_cols=24 Identities=50% Similarity=0.668 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.+.++++|-+
T Consensus 35 liG~NGaGKSTLl~~i~Gll~p~~ 58 (277)
T PRK13652 35 VIGPNGAGKSTLFKHFNGILKPTS 58 (277)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999479999999966999984
No 310
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=94.96 E-value=0.012 Score=36.21 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.++++++|-+
T Consensus 50 llGpsGsGKSTllr~i~Gl~~p~~ 73 (377)
T PRK11607 50 LLGASGCGKSTLLRMLAGFEQPSA 73 (377)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998489999999976999986
No 311
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=94.96 E-value=0.01 Score=36.67 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCCEEEEECHHHC---CHHHHHHHHHHHHCCCE
Q ss_conf 79988998038785---98899999999971952
Q gi|254781026|r 80 AHNGVLFLDEIPEF---SPQTLNALRQPLETGEC 110 (186)
Q Consensus 80 Ah~GVLflDE~~e~---~~~~l~~L~~~le~g~v 110 (186)
-+.-++.+||++.| ++.-.++++++|++.+.
T Consensus 94 ~~~dlivIDEIG~mEl~s~~F~~~v~~~l~~~~~ 127 (168)
T pfam03266 94 EEADLIIIDEIGPMELKSPKFREAIEEVLSSNKP 127 (168)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6898999976314533149999999999669997
No 312
>PRK10908 cell division protein FtsE; Provisional
Probab=94.96 E-value=0.013 Score=36.20 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 33 liG~nGsGKSTLl~~i~Gl~~p~~ 56 (222)
T PRK10908 33 LTGHSGAGKSTLLKLICGIERPSA 56 (222)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998079999999965999986
No 313
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.95 E-value=0.012 Score=36.36 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||+|.|++++.|-+
T Consensus 31 LiGpNGaGKSTLlk~i~Gll~P~~ 54 (255)
T cd03236 31 LVGPNGIGKSTALKILAGKLKPNL 54 (255)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 989999709999999967986887
No 314
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.94 E-value=0.014 Score=35.98 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
|+|+-|+|||||+|.|++.+|+.+-
T Consensus 34 LvG~NGaGKSTL~k~l~G~l~~~~G 58 (490)
T PRK10938 34 FVGSNGSGKSALARALAGELPLLKG 58 (490)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 9979997799999999569987885
No 315
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.93 E-value=0.012 Score=36.40 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHH
Q ss_conf 97778605999999988748--8989788532
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLE 30 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le 30 (186)
|+|.||+|||+++|.++..| |-++-++.+|
T Consensus 4 LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie 35 (154)
T cd00464 4 LIGMMGAGKTTVGRLLAKALGLPFVDLDELIE 35 (154)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECCHHHH
T ss_conf 98899998899999999997989796859999
No 316
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.92 E-value=0.012 Score=36.40 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|.-|+||||+||.+.+++||-
T Consensus 322 lVGeSGsGKSTlar~i~gL~~P~ 344 (539)
T COG1123 322 LVGESGSGKSTLARILAGLLPPS 344 (539)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98899999899999994877888
No 317
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.013 Score=36.06 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.+.++++|-+
T Consensus 33 iiG~nGsGKSTLl~~l~Gll~P~~ 56 (275)
T PRK13639 33 ILGPNGAGKSTLFLHFNGILKPSS 56 (275)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999649999999973989996
No 318
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.013 Score=36.17 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-|+||||+.+.+.++++|-+
T Consensus 30 llGpNGAGKSTll~~i~Gl~~p~s 53 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLTPPSS 53 (211)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998239999999975966896
No 319
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=94.90 E-value=0.014 Score=35.99 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
-+||||+||||+.+++...++.+
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~ 23 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLR 23 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 98989898899999999999977
No 320
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.89 E-value=0.012 Score=36.21 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.+++.|-+
T Consensus 38 IiG~nGsGKSTL~k~l~Gll~P~~ 61 (304)
T PRK13651 38 IIGQTGSGKTTFIEHLNALLLPDT 61 (304)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 987999859999999966999887
No 321
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.89 E-value=0.013 Score=36.05 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+||||++|.+.+++.|-+
T Consensus 42 iiG~nGsGKSTL~r~l~gl~~P~~ 65 (281)
T PRK13633 42 ILGHNGSGKSTIAKHMNALLLPSE 65 (281)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999849999999975887888
No 322
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.88 E-value=0.014 Score=35.98 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+.|+|||||++.+.+++++.+
T Consensus 32 IvG~sGsGKSTLl~~l~g~~~~~~ 55 (218)
T cd03290 32 IVGQVGCGKSSLLLAILGEMQTLE 55 (218)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999809999999855565677
No 323
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=94.87 E-value=0.013 Score=36.09 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+|||||++.+..+++|-
T Consensus 46 iVGeSGsGKSTL~~~l~gl~~p~ 68 (327)
T PRK11308 46 VVGESGCGKSTLARLLTMIETPT 68 (327)
T ss_pred EECCCCHHHHHHHHHHHCCCCCC
T ss_conf 99998319999999995699988
No 324
>KOG0736 consensus
Probab=94.86 E-value=0.0092 Score=36.99 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
|-|+||+|||++.+..++-|-- . .+|+.+. +.... ..-|..+...+.+.-.....|-.|-++
T Consensus 436 LhG~~g~GK~t~V~~vas~lg~-h---~~evdc~-el~~~-------------s~~~~etkl~~~f~~a~~~~pavifl~ 497 (953)
T KOG0736 436 LHGPPGSGKTTVVRAVASELGL-H---LLEVDCY-ELVAE-------------SASHTETKLQAIFSRARRCSPAVLFLR 497 (953)
T ss_pred EECCCCCCHHHHHHHHHHHHCC-C---EEECCHH-HHHHC-------------CCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8679998757999999998387-2---5701389-88643-------------633137899999998752686289872
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
|--|+-+|..+--+..++.++++-|+..-..- .. -..++|++++--
T Consensus 498 ~~dvl~id~dgged~rl~~~i~~~ls~e~~~~-------~~-~~~ivv~t~~s~ 543 (953)
T KOG0736 498 NLDVLGIDQDGGEDARLLKVIRHLLSNEDFKF-------SC-PPVIVVATTSSI 543 (953)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCC-------CC-CCEEEEEECCCC
T ss_conf 24245533777442779999999972023567-------79-965999962530
No 325
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.85 E-value=0.013 Score=36.11 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 40 iiG~sGsGKSTLl~ll~Gl~~p~~ 63 (269)
T PRK13648 40 IVGHNGSGKSTIAKLMIGIEKVKS 63 (269)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999979999999964979985
No 326
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.83 E-value=0.013 Score=36.02 Aligned_cols=104 Identities=25% Similarity=0.271 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCC-CCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC--HHHH
Q ss_conf 977786059999999887488989788532300000027-8887565311120203775210011023434568--2799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISG-HSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL--PGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g-~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~--pG~i 77 (186)
++||.|+|||||++.+.++++|-+-.-.+.-..+....- ........+.+.+.--.. +...--+-||...-. +-++
T Consensus 33 IvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~-ti~eNiLSGGQkQRvalARal 111 (173)
T cd03246 33 IIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENILSGGQRQRLGLARAL 111 (173)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCC-CHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999998099999999666667999899999993328998984208999088836777-589976769999999999998
Q ss_pred HHCCCCEEEEECHH-HCCHHHHHHHHHHHH
Q ss_conf 82799889980387-859889999999997
Q gi|254781026|r 78 SLAHNGVLFLDEIP-EFSPQTLNALRQPLE 106 (186)
Q Consensus 78 ~lAh~GVLflDE~~-e~~~~~l~~L~~~le 106 (186)
..+--||++||-. -+++..-..+.+.++
T Consensus 112 -~~~p~ililDEpts~LD~~~e~~i~~~l~ 140 (173)
T cd03246 112 -YGNPRILVLDEPNSHLDVEGERALNQAIA 140 (173)
T ss_pred -HCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -27999999968766899899999999999
No 327
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.83 E-value=0.34 Score=27.75 Aligned_cols=154 Identities=15% Similarity=0.050 Sum_probs=78.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
.+||--+|||+|+++++.++..-+.-|.--. .+.-....+..+. -..-+.+.-|.....--++.-|
T Consensus 13 ilG~ESsGKStLv~kLA~~fnt~~~wEY~Re----~v~~~l~gdeal~----------y~Dy~~ia~Gq~~~~d~av~~a 78 (187)
T COG3172 13 ILGGESSGKSTLVNKLANIFNTTSAWEYGRE----YVFEHLGGDEALQ----------YSDYAKIALGQAAYEDAAVRYA 78 (187)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHCCCHHHH----------HCCHHHHHHHHHHHHHHHHHCC
T ss_conf 6457665717999999999688731277899----9999848964231----------0438999861578888987277
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
| +|+|+|-=.. ...+--.+++.-+.-. -.....++|=+..|+-.-| - -+.+.+..|--+..++..+++.+
T Consensus 79 ~-~v~fiDTD~i-tT~~~~~~y~gr~~P~----~~~~i~~~r~DL~lLl~p~-t---~wvaDG~R~~~~~~~R~~F~~~l 148 (187)
T COG3172 79 N-KVAFIDTDFL-TTQAFCKKYEGREHPF----LQALIAEYRFDLTLLLEPN-T---PWVADGLRSLGSSVQRQEFQNLL 148 (187)
T ss_pred C-CEEEEECCHH-HHHHHHHHHCCCCCCH----HHHHHHHCCCCEEEECCCC-C---CEECCCCCCCCCHHHHHHHHHHH
T ss_conf 8-4599734078-8999999974667845----7788861666359973899-8---50077745364276799999999
Q ss_pred CHHHHHCC-CEEEECCCCCH
Q ss_conf 24321004-25998388566
Q gi|254781026|r 161 SGPLMDRI-DIRIAVPSRTH 179 (186)
Q Consensus 161 s~plldR~-Dl~v~~~~~~~ 179 (186)
-. .|+++ +=.|.+....+
T Consensus 149 ~~-~L~~~~~~~v~i~~~~y 167 (187)
T COG3172 149 EQ-MLEENNIPFVVIEGEDY 167 (187)
T ss_pred HH-HHHHHCCCEEEECCCCH
T ss_conf 99-99981996799768778
No 328
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.82 E-value=0.014 Score=35.87 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.+.++++|-+
T Consensus 43 LiG~nGaGKSTLlr~i~Gl~~p~~ 66 (257)
T PRK11247 43 VVGRSGCGKSTLLRLLAGLETPTA 66 (257)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 998998889999999965898888
No 329
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.81 E-value=0.013 Score=36.14 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||+|.+.++++|-+
T Consensus 33 liGpNGaGKSTLlk~i~Gl~~p~~ 56 (257)
T PRK13548 33 ILGPNGAGKSTLLRALSGELPPSS 56 (257)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999879999999856757787
No 330
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.011 Score=36.58 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=18.4
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
|.|+||+|||++|+-|+.+|
T Consensus 6 lTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 6 LTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EECCCCCCCHHHHHHHHHHH
T ss_conf 82699988017899999999
No 331
>KOG3347 consensus
Probab=94.79 E-value=0.014 Score=35.94 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
.|.||+|||++++++++.+
T Consensus 13 tGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347 13 TGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred ECCCCCCCHHHHHHHHHHH
T ss_conf 6799988025999999973
No 332
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=94.79 E-value=0.015 Score=35.81 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+||||+++.+.+++|+-
T Consensus 47 ivGeSGsGKSTl~~~i~gll~~~ 69 (330)
T PRK09473 47 IVGESGSGKSQTAFALMGLLAAN 69 (330)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98689877999999997688888
No 333
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.014 Score=35.91 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 40 iiG~sGsGKSTLl~~i~Gl~~p~~ 63 (233)
T PRK11629 40 IVGSSGSGKSTLLHLLGGLDTPTS 63 (233)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999409999999966999986
No 334
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.77 E-value=0.014 Score=35.89 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 32 iiG~nGaGKSTLlk~i~Gl~~p~~ 55 (211)
T cd03225 32 IVGPNGSGKSTLLRLLNGLLGPTS 55 (211)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 988999989999999964677988
No 335
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.77 E-value=0.085 Score=31.33 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=26.3
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 79988998038785988999999999719
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
..+-|..||....++...-|+|+.-+|+=
T Consensus 131 g~~kVviI~~Ae~mn~~aaNalLK~LEEP 159 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEP 159 (342)
T ss_pred CCCEEEEECCHHHHCHHHHHHHHHHHCCC
T ss_conf 88449998277873899999999972379
No 336
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.77 E-value=0.013 Score=36.05 Aligned_cols=124 Identities=18% Similarity=0.114 Sum_probs=62.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-HH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799-82
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-SL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~l 79 (186)
|.|+||||||.||-+++.-|- + +-+++. ++... ........-.+....-+...+ .+
T Consensus 101 F~G~~GTGKThLA~aIan~Li--------~--~G~sVl--------f~t~~-----dLl~~lr~t~~~~~~~e~~~l~~l 157 (242)
T PRK07952 101 FSGKPGTGKNHLAAAICNELL--------L--RGKSVL--------IITVA-----DIMSAMKDTFRNSETSEEQLLNDL 157 (242)
T ss_pred EECCCCCCHHHHHHHHHHHHH--------H--CCCEEE--------EEEHH-----HHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 978999978999999999999--------8--799499--------97799-----999999999806875699999986
Q ss_pred CCCCEEEEECHH--HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 799889980387--859889999999997195230100307898470156752274658878898876438999999998
Q gi|254781026|r 80 AHNGVLFLDEIP--EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ 157 (186)
Q Consensus 80 Ah~GVLflDE~~--e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~ 157 (186)
.+--+|.|||++ ..++...+.|.+........ .--+|.++|-- ..+..+
T Consensus 158 ~~~dLLIiDdlG~e~~t~~~~~~lf~iId~Ry~~------------~kp~IitTNl~---------------~~eL~~-- 208 (242)
T PRK07952 158 SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSS------------KRPTGMLTNSN---------------MEEMTK-- 208 (242)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHC------------CCCEEEEECCC---------------HHHHHH--
T ss_conf 3189898730146658888999999999999971------------69889981799---------------999999--
Q ss_pred HHCCHHHHHCC--C--EEEECCCC
Q ss_conf 51224321004--2--59983885
Q gi|254781026|r 158 ARISGPLMDRI--D--IRIAVPSR 177 (186)
Q Consensus 158 ~rls~plldR~--D--l~v~~~~~ 177 (186)
.+..-+.||+ + ..|.+.-.
T Consensus 209 -~lGeR~~dRl~~~~~~~l~f~w~ 231 (242)
T PRK07952 209 -LLGERVMDRMRLGNSLWVIFNWD 231 (242)
T ss_pred -HHHHHHHHHHHHCCCEEEEECCC
T ss_conf -97089999997279859960670
No 337
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.75 E-value=0.015 Score=35.80 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||+|.+.++++|-+
T Consensus 42 liG~NGaGKSTLl~~l~gl~~p~~ 65 (265)
T PRK10575 42 LIGHNGSGKSTLLKMLGRHQPPSE 65 (265)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999809999999956889987
No 338
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.74 E-value=0.014 Score=35.89 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||+|.+.++++|-+
T Consensus 35 LiGpNGaGKSTLlk~I~Gl~~p~~ 58 (251)
T PRK09544 35 LLGPNGAGKSTLVRVVLGLVAPDE 58 (251)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 998999889999999966888986
No 339
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.74 E-value=0.014 Score=35.87 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+||||+++.+.++++|-+
T Consensus 57 IIG~nGsGKSTL~~~l~Gll~p~~ 80 (320)
T PRK13631 57 IIGNSGSGKSTLVTHFNGLIKSKY 80 (320)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 994999849999999975888998
No 340
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.74 E-value=0.015 Score=35.76 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++||-|+|||||.|.+.+++++
T Consensus 35 iiGpNGaGKSTLlk~i~Gll~~ 56 (262)
T PRK09984 35 LLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred EECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989996099999999756777
No 341
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.73 E-value=0.015 Score=35.74 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++..|-+
T Consensus 29 i~GpSGsGKSTLL~~i~gl~~p~s 52 (206)
T TIGR03608 29 IVGESGSGKSTLLNIIGLLEKPDS 52 (206)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 987999709999999975999897
No 342
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.73 E-value=0.015 Score=35.79 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+.+.+.++++|-+
T Consensus 32 liGpNGaGKSTLlk~l~Gl~~p~~ 55 (271)
T PRK13638 32 LVGANGCGKSTLFMNLSGLLRPQK 55 (271)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999809999999966888886
No 343
>PRK13542 consensus
Probab=94.73 E-value=0.014 Score=35.93 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.|.|.++++|-+
T Consensus 49 liGpNGaGKTTLlk~l~Gll~p~~ 72 (224)
T PRK13542 49 VMGPNGSGKTSLLRVLSGLMPPAE 72 (224)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999999999999957978885
No 344
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.71 E-value=0.014 Score=35.83 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=4.8
Q ss_pred CCCCCCHHHHHH
Q ss_conf 777860599999
Q gi|254781026|r 2 IGPPGARKSMLA 13 (186)
Q Consensus 2 ~GpPG~GKS~la 13 (186)
+||+|+||||.+
T Consensus 200 vGPTGVGKTTTi 211 (282)
T TIGR03499 200 VGPTGVGKTTTL 211 (282)
T ss_pred ECCCCCCHHHHH
T ss_conf 778887578899
No 345
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.71 E-value=0.015 Score=35.77 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++||.|+||||+++.+++++.+
T Consensus 40 ilGpnGaGKSTLl~~l~Gl~~~ 61 (194)
T cd03213 40 IMGPSGAGKSTLLNALAGRRTG 61 (194)
T ss_pred EECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989995199999998577778
No 346
>PRK13946 shikimate kinase; Provisional
Probab=94.71 E-value=0.012 Score=36.20 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHHH
Q ss_conf 97778605999999988748--89897885323
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLEV 31 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le~ 31 (186)
|+|.+|+|||++.|.|+..| |-++-++.+|.
T Consensus 25 LIG~mGsGKStvGk~LA~~L~~~fiD~D~~IE~ 57 (195)
T PRK13946 25 LVGLMGAGKSTVGRRLATMLGLPFLDADTEIER 57 (195)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH
T ss_conf 989999988999999999979798988599999
No 347
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.031 Score=33.85 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=73.5
Q ss_pred CCCCCHHHCCCCCCCCCHHHHHHCCCCEEEEECHHHC---CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 7521001102343456827998279988998038785---9889999999997195230100307898470156752274
Q gi|254781026|r 57 HHSVTIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEF---SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 57 ~~~~~~~~l~gg~~~~~pG~i~lAh~GVLflDE~~e~---~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
+..++.+.++.+-..-++|++.+- -|.-+||.... +++-+..|.+-|++| +.+|+.-.+.-.|...+++..|-
T Consensus 254 GGqttvAnLFYNmatrqiGlvg~w--DvVaFDEVagirFkdkDg~qilKDYMaSG--sf~RG~~~v~~~ASlVFvGNvnq 329 (683)
T COG4930 254 GGQTTVANLFYNMATRQIGLVGLW--DVVAFDEVAGIRFKDKDGMQILKDYMASG--SFERGDKKVVSDASLVFVGNVNQ 329 (683)
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEE--EEEEEHHHCCCCCCCCCHHHHHHHHHHCC--CCCCCCCCCCCCCEEEEEECCCC
T ss_conf 884538999888764456420000--01343011240046800779999987528--70025420236643999832330
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEE
Q ss_conf 658878898876438999999998512243210042599
Q gi|254781026|r 134 CRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRI 172 (186)
Q Consensus 134 cpcG~~~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v 172 (186)
.-.|+...... ..--|.. ....++.|||.-.+
T Consensus 330 s~E~lvktshL-~~pfPea------M~DtAFfDR~H~yi 361 (683)
T COG4930 330 SSEGLVKTSHL-TYPFPEA------MRDTAFFDRIHGYI 361 (683)
T ss_pred CCCCEEEHHHC-CCCCCHH------HHHHHHHHHHHCCC
T ss_conf 10010106660-5568255------41457888875437
No 348
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.70 E-value=0.016 Score=35.56 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 37 iiG~nGsGKSTLl~~l~Gll~p~~ 60 (288)
T PRK13643 37 LIGHTGSGKSTLLQHLNGLLQPTE 60 (288)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999479999999974888888
No 349
>PRK13949 shikimate kinase; Provisional
Probab=94.69 E-value=0.015 Score=35.71 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHH
Q ss_conf 97778605999999988748--8989788532
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLE 30 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le 30 (186)
|+|.+|+|||++.|.++..| |-++-++.+|
T Consensus 6 LiG~mGsGKstiGk~La~~l~~~fiD~D~~Ie 37 (169)
T PRK13949 6 LVGYMGAGKTTLGKALARELGLSFIDLDFFIE 37 (169)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECCHHHH
T ss_conf 97999998899999999995999797849999
No 350
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.016 Score=35.61 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+|||||++.+.++++|-+
T Consensus 38 iiG~nGsGKSTLl~~l~Gl~~p~~ 61 (280)
T PRK13649 38 FIGHTGSGKSTIMQLLNGLHVPTT 61 (280)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 995999869999999966999886
No 351
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.66 E-value=0.014 Score=36.00 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=23.9
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHHH
Q ss_conf 97778605999999988748--89897885323
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLEV 31 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le~ 31 (186)
|+|.+|+|||++.|.|+..| |-++-++.+|.
T Consensus 7 LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~ 39 (172)
T PRK03731 7 LVGPRGCGKTTVGMALAQALGYRFVDTDLWLQS 39 (172)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECCHHHHH
T ss_conf 988999988999999999859997978699998
No 352
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.013 Score=36.04 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+.|+|||||++.+.++++|-
T Consensus 32 ivG~sGsGKSTLl~ll~gl~~p~ 54 (236)
T cd03253 32 IVGPSGSGKSTILRLLFRFYDVS 54 (236)
T ss_pred EECCCCCCHHHHHHHHCCCCCCC
T ss_conf 99999998999999974385488
No 353
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.63 E-value=0.017 Score=35.42 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.+++.|-+
T Consensus 38 iiG~nGsGKSTLl~~l~Gll~P~s 61 (286)
T PRK13641 38 LIGHTGSGKSTLMQHFNALLKPSS 61 (286)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998399999999965989885
No 354
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.62 E-value=0.017 Score=35.46 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||+|.+.++.+|-+
T Consensus 36 iiG~sGsGKSTLl~~i~gl~~p~~ 59 (257)
T PRK10619 36 IIGSSGSGKSTFLRCINFLEKPSE 59 (257)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 998999819999999965999998
No 355
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.61 E-value=0.017 Score=35.46 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+.|+|||||++.+.++++|-+
T Consensus 45 IvG~sGsGKSTL~~ll~gl~~p~~ 68 (226)
T cd03248 45 LVGPSGSGKSTVVALLENFYQPQG 68 (226)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999849999999964546788
No 356
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.60 E-value=0.017 Score=35.39 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+||||+++.+.+++|.-
T Consensus 36 lvG~nGsGKSTL~~~l~Gl~p~~ 58 (513)
T PRK13549 36 LCGENGAGKSTLMKVLSGVYPHG 58 (513)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98999972999999995678899
No 357
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.017 Score=35.42 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
.|+||+||||+|+.|+..+
T Consensus 6 sG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 6 SGLPGSGKTTVARELAEHL 24 (179)
T ss_pred CCCCCCCCHHHHHHHHHHH
T ss_conf 1799997027999999982
No 358
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.55 E-value=0.017 Score=35.45 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=15.5
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 777860599999998874
Q gi|254781026|r 2 IGPPGARKSMLASCLPSI 19 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~i 19 (186)
+||||+|||||.|.|..-
T Consensus 45 vGPpgvGKtTLiksLvk~ 62 (225)
T cd01882 45 VGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 898997788999999999
No 359
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.54 E-value=0.016 Score=35.55 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
++|..|.|||||.|-++++.||-+-
T Consensus 58 iiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 58 IIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 9878998589999999587179882
No 360
>KOG0055 consensus
Probab=94.53 E-value=0.056 Score=32.38 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=31.2
Q ss_pred HHHHHHCCCCEEEEECHH-----HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEE
Q ss_conf 279982799889980387-----85988999999999719523010030789847015675
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIP-----EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIA 129 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~-----e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lva 129 (186)
+.++.+ +=-||+|||.. +-.+-|+++|..+++..+..+---+.+.--.|+-+++.
T Consensus 501 ARAli~-~P~ILLLDEaTSALD~~se~iVQ~ALd~a~~GrTTivVaHRLStIrnaD~I~v~ 560 (1228)
T KOG0055 501 ARALVR-NPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVM 560 (1228)
T ss_pred HHHHHH-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHCCCEEEEE
T ss_conf 999971-898888607411068788999999999974498699996124666446879999
No 361
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.52 E-value=0.02 Score=34.97 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+|||||++.+.++++|-+
T Consensus 39 ivG~sGsGKSTLl~ll~g~~~p~~ 62 (207)
T cd03369 39 IVGRTGAGKSTLILALFRFLEAEE 62 (207)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999879999999998728888
No 362
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.52 E-value=0.022 Score=34.81 Aligned_cols=19 Identities=42% Similarity=0.550 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
-||+|+||||+|+.++.-|
T Consensus 5 dGpagsGKsT~ak~lA~~l 23 (147)
T cd02020 5 DGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 6899789899999999990
No 363
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=94.51 E-value=0.1 Score=30.80 Aligned_cols=71 Identities=31% Similarity=0.423 Sum_probs=49.0
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 79988998038785988999999999719523010030789847015675227465887889887643899999999851
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQAR 159 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~r 159 (186)
---|||||||..-++-....-|--+||+.-- -++|.|+|---|--.+.. .-+| +-
T Consensus 274 lvpGVLFIDEvHMLDiEcFsfLnralEs~la--------------PivI~ATNRG~~~IRGTd----~~sP-------HG 328 (395)
T pfam06068 274 IVPGVLFIDEVHMLDIECFSFLNRALESELA--------------PIVILATNRGICTIRGTD----IISP-------HG 328 (395)
T ss_pred EECCCEEEECCHHCCHHHHHHHHHHHCCCCC--------------CEEEEEECCCCEEECCCC----CCCC-------CC
T ss_conf 8427468850000005899888776505678--------------769998446520352567----7588-------89
Q ss_pred CCHHHHHCCCEEEECC
Q ss_conf 2243210042599838
Q gi|254781026|r 160 ISGPLMDRIDIRIAVP 175 (186)
Q Consensus 160 ls~plldR~Dl~v~~~ 175 (186)
++--||||+=|.-..|
T Consensus 329 iP~DlLDRllII~T~p 344 (395)
T pfam06068 329 IPLDLLDRLLIITTEP 344 (395)
T ss_pred CCHHHHHHEEEEECCC
T ss_conf 9877773025885688
No 364
>PRK13948 shikimate kinase; Provisional
Probab=94.51 E-value=0.018 Score=35.28 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=24.0
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHHH
Q ss_conf 97778605999999988748--89897885323
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLEV 31 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le~ 31 (186)
|+|.+|+|||++.|.|+..| |-++-++.+|.
T Consensus 15 LIG~mGsGKStiGk~LA~~l~~~fiD~D~~Ie~ 47 (182)
T PRK13948 15 LAGFMGTGKSRIGWELSRALALHFVDTDKLITR 47 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH
T ss_conf 889999988999999999969598888499999
No 365
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.019 Score=35.18 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+||||++|.+.++..|-
T Consensus 36 ivG~SGsGKSTllr~i~gL~~p~ 58 (233)
T cd03258 36 IIGRSGAGKSTLIRCINGLERPT 58 (233)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98898058999999996799999
No 366
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.44 E-value=0.018 Score=35.32 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+||||++|.++++..|-
T Consensus 38 ivGeSGsGKSTL~r~l~Gl~~p~ 60 (252)
T COG1124 38 IVGESGSGKSTLARLLAGLEKPS 60 (252)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98489898889999995656788
No 367
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA; InterPro: IPR005895 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the cytochrome c biogenesis protein encoded by ccmA in bacteria and one arabidopsis protein, possibly encoded by an organelle. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The post-translational pathway includes the transport of a heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which functions as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.; GO: 0005215 transporter activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=94.42 E-value=0.022 Score=34.74 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=59.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH-----------CEEECC------CCCCCCCCCCCCCEEEC----CCCCC
Q ss_conf 7778605999999988748898978853230-----------000002------78887565311120203----77521
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVS-----------MIYSIS------GHSSHEYSFIQNRPFRS----PHHSV 60 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~-----------~i~s~~------g~~~~~~~~~~~~p~~~----~~~~~ 60 (186)
.||=|+|||+|.|-+++|++|.+-+-.+.-. .++++. +.....+.+.=...|.. .+...
T Consensus 32 ~GpNG~GKTtLLR~LAGL~~P~~G~v~~~~~~~~~~~~~~~~~~~YlGH~~GlK~~Lsa~ENL~F~~~~~~stCs~~~~~ 111 (204)
T TIGR01189 32 EGPNGIGKTTLLRILAGLLRPESGEVRLNGTALAEQRDEPHENLLYLGHLDGLKPELSALENLQFWAAIHGSTCSSEQLT 111 (204)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 60698735789999985058866557528822421156477878888510034501377887999999852016831247
Q ss_pred CHHH-----CC------------CCCCCCCHHHHHHCCCCEEEEEC-HHHCCHHHHHHHHHHHHCCCEEEHHCCEE
Q ss_conf 0011-----02------------34345682799827998899803-87859889999999997195230100307
Q gi|254781026|r 61 TIAA-----LI------------GGGLQVLPGEDSLAHNGVLFLDE-IPEFSPQTLNALRQPLETGECIIARANRK 118 (186)
Q Consensus 61 ~~~~-----l~------------gg~~~~~pG~i~lAh~GVLflDE-~~e~~~~~l~~L~~~le~g~v~i~R~g~~ 118 (186)
...+ +- |-.+.+==.-+=+.+.=|=.||| +.=+|++-++.|-+.|++. +.|+|++
T Consensus 112 ~~~AL~~vgL~g~e~~p~~~LSAGQqRRlaLARL~l~~~PlWiLDEP~tALD~~Gv~~l~~~~~~H---~~rGG~v 184 (204)
T TIGR01189 112 IEDALAAVGLTGLEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAALLAAH---LARGGIV 184 (204)
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCHHHCCHHHHHHHHHHHHHH---HHCCCCE
T ss_conf 799997608433145898740614689999998863379722203651430689999999999999---8600513
No 368
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.42 E-value=0.019 Score=35.16 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+.+.+.++++|-+
T Consensus 31 liG~nGaGKSTLl~~i~Gl~~p~~ 54 (222)
T cd03224 31 LLGRNGAGKTTLLKTIMGLLPPRS 54 (222)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999859999999977988996
No 369
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.019 Score=35.08 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+.|+|||||++.|.++++|-
T Consensus 34 ivG~sGsGKSTLl~ll~gl~~p~ 56 (229)
T cd03254 34 IVGPTGAGKTTLINLLMRFYDPQ 56 (229)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999980999999996686678
No 370
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=94.39 E-value=0.055 Score=32.43 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.1
Q ss_pred CCEEEEECHHHCCHHHHHHHH
Q ss_conf 988998038785988999999
Q gi|254781026|r 82 NGVLFLDEIPEFSPQTLNALR 102 (186)
Q Consensus 82 ~GVLflDE~~e~~~~~l~~L~ 102 (186)
..++++||+-.++...++.+.
T Consensus 60 ~~~~iiDE~~~~~~g~l~~~~ 80 (226)
T pfam01443 60 GKILILDEYTLLPPGYILLLA 80 (226)
T ss_pred CCEEEECCCCCCCHHHHHHHH
T ss_conf 788998964566816899987
No 371
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.36 E-value=0.019 Score=35.13 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
|.||-|+||||++|.|++|.-|-
T Consensus 33 LlGpSGaGKsTlLRiIAGLe~p~ 55 (345)
T COG1118 33 LLGPSGAGKSTLLRIIAGLETPD 55 (345)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 97789876788999985757788
No 372
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.34 E-value=0.02 Score=35.02 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+.|+|||||++.+.++++|-+
T Consensus 68 IVG~sGSGKSTLl~lL~gl~~p~~ 91 (282)
T cd03291 68 ITGSTGSGKTSLLMLILGELEPSE 91 (282)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999819999999957872786
No 373
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.33 E-value=0.022 Score=34.78 Aligned_cols=24 Identities=46% Similarity=0.707 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|.+
T Consensus 30 liG~nGsGKTTLl~~i~G~~~~~~ 53 (180)
T cd03214 30 ILGPNGAGKSTLLKTLAGLLKPSS 53 (180)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 998999889999999957989987
No 374
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.31 E-value=0.029 Score=34.05 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+.|+||||+++-+.++.+|-+
T Consensus 373 iVG~SGsGKSTL~~LL~gly~p~~ 396 (581)
T PRK11176 373 LVGRSGSGKSTIANLLTRFYDIDE 396 (581)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 228999867899999985366788
No 375
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.30 E-value=0.022 Score=34.77 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.+.+++.|-+
T Consensus 36 iiG~NGsGKSTLl~~l~Gl~~p~~ 59 (273)
T PRK13647 36 ILGPNGAGKSTLLLHLNGIYTAQR 59 (273)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999759999999966988886
No 376
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.29 E-value=0.02 Score=35.01 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 977786059999999887
Q gi|254781026|r 1 MIGPPGARKSMLASCLPS 18 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~ 18 (186)
|+||+|+||||.+-.|+.
T Consensus 215 lVGPTGVGKTTTiAKLAA 232 (412)
T PRK05703 215 LVGPTGVGKTTTLAKLAA 232 (412)
T ss_pred EECCCCCCHHHHHHHHHH
T ss_conf 988888756769999999
No 377
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.29 E-value=0.021 Score=34.90 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.+.+.++++|-+
T Consensus 33 llG~NGaGKSTLl~~i~Gl~~p~~ 56 (220)
T cd03263 33 LLGHNGAGKTTTLKMLTGELRPTS 56 (220)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 998999739999999966987889
No 378
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.27 E-value=0.019 Score=35.15 Aligned_cols=19 Identities=47% Similarity=0.908 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9777860599999998874
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSI 19 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~i 19 (186)
|+||-||||||+.|.+--+
T Consensus 38 lIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 38 LIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred EECCCCCCHHHHHHHHHHH
T ss_conf 8889886788899998754
No 379
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.24 E-value=0.023 Score=34.63 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++..|-+
T Consensus 32 i~GpSGsGKSTLl~~i~gl~~p~s 55 (214)
T cd03292 32 LVGPSGAGKSTLLKLIYKEELPTS 55 (214)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 997999539999999962989886
No 380
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.23 E-value=0.021 Score=34.86 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
++||-|+||||+++.+.++++
T Consensus 31 iiG~SGsGKSTll~~i~gL~~ 51 (227)
T cd03260 31 LIGPSGCGKSTLLRLLNRLND 51 (227)
T ss_pred EECCCCCCHHHHHHHHHHHHH
T ss_conf 999999819999999974450
No 381
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.22 E-value=0.021 Score=34.85 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++||-|+||||+.+.+.+++|.
T Consensus 28 iiGpNGaGKSTLlk~i~Gl~p~ 49 (245)
T PRK03695 28 LVGPNGAGKSTLLARMAGLLSG 49 (245)
T ss_pred EECCCCCHHHHHHHHHHCCCCC
T ss_conf 9978994199999998466888
No 382
>TIGR02653 Lon_rel_chp conserved hypothetical protein; InterPro: IPR013473 This entry describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to IPR008269 from INTERPRO, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of Escherichia coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]..
Probab=94.22 E-value=0.021 Score=34.86 Aligned_cols=129 Identities=21% Similarity=0.227 Sum_probs=84.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCC
Q ss_conf 77786059999999887488989788532300000027888756531112020377521001102343456827998279
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAH 81 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh 81 (186)
+||.|||||-.=+-+ .+...| ..+..+|.+-|+-+-..-+-|.+-+=+
T Consensus 224 LGPrgTGKShvYkE~-------------------------SPn~iL-------~sGGqTTVANLFyN~str~~GLVG~WD 271 (677)
T TIGR02653 224 LGPRGTGKSHVYKEL-------------------------SPNSIL-------MSGGQTTVANLFYNMSTRQIGLVGLWD 271 (677)
T ss_pred ECCCCCCCCEEEECC-------------------------CCCEEE-------ECCCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 478898734054135-------------------------842122-------058843567766654216302033001
Q ss_pred CCEEEEECHH---HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9889980387---8598899999999971952301003078984701567522746588788988764389999999985
Q gi|254781026|r 82 NGVLFLDEIP---EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 82 ~GVLflDE~~---e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
|.-+||++ ..+++.++.|-+=|++| +.+|+.-+..=.|...|+|..|= +-.-+--..+-..=-|..++
T Consensus 272 --vVAFDEVAgi~fkdKdgv~imKdYmaSG--SFARGkes~~g~ASivfvGN~NQ-~vEtlvKtSHLf~PfP~a~~---- 342 (677)
T TIGR02653 272 --VVAFDEVAGIEFKDKDGVQIMKDYMASG--SFARGKESIEGKASIVFVGNINQ-SVETLVKTSHLFAPFPEAMR---- 342 (677)
T ss_pred --EEEEEEECCCCCCCCCCHHHHHHHHCCC--CCCCCCCCCCCCEEEEEECCCCC-CHHHHHHHHHHCCCCHHHHH----
T ss_conf --2531000487204863103433542047--85345346355334899857786-15788877653044068874----
Q ss_pred HCCHHHHHCCCEEE
Q ss_conf 12243210042599
Q gi|254781026|r 159 RISGPLMDRIDIRI 172 (186)
Q Consensus 159 rls~plldR~Dl~v 172 (186)
.-.+++|||.-.+
T Consensus 343 -~DtAFfDR~H~Yi 355 (677)
T TIGR02653 343 -EDTAFFDRIHYYI 355 (677)
T ss_pred -HHHHHHHHHHCCC
T ss_conf -1025675563058
No 383
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=94.21 E-value=0.2 Score=29.15 Aligned_cols=88 Identities=13% Similarity=0.239 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
+.|||.+|||.+|.+|+..+|- ...+.+.. ... || ..+
T Consensus 118 ~~Gp~~TGks~la~ai~~~~~~-----------~g~v~~~N-~~f------p~------------------------~d~ 155 (271)
T pfam01057 118 FYGPASTGKTNLAQAIAHAVPL-----------YGCVNWTN-ENF------PF------------------------NDC 155 (271)
T ss_pred EECCCCCCHHHHHHHHHHHCCC-----------EEEECCCC-CCC------CC------------------------CCC
T ss_conf 9889876789999999986895-----------27851787-788------76------------------------446
Q ss_pred -CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCE-EEEECCCEEEEEECC
Q ss_conf -9988998038785988999999999719523010030-789847015675227
Q gi|254781026|r 81 -HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR-KISYPSRIQLIAAMN 132 (186)
Q Consensus 81 -h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~-~~~~Pa~f~Lvaa~N 132 (186)
+.-+.+.|| ..+..+..+.++..+.-..+.|.+-.. ++.+..-. +|.++|
T Consensus 156 ~~~~~~wwee-~~~~~~~ve~~r~il~G~~i~vD~k~k~~~~l~~~P-viiTsn 207 (271)
T pfam01057 156 PNKLLIWWEE-GLMTVKVVELAKAILGGTDVRVDQKCKGSVEIEPTP-VIITSN 207 (271)
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC-EEEEEC
T ss_conf 5478999807-887188999999972999625634789800237997-899827
No 384
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.21 E-value=0.022 Score=34.76 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-|+||||+.+.+.++++|-+
T Consensus 36 llG~NGaGKSTllk~i~Gl~~p~~ 59 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAGLLEPDA 59 (218)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999849999999977977897
No 385
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=94.20 E-value=0.021 Score=34.85 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC--HHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568--27998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL--PGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~--pG~i~ 78 (186)
|+||||+|||.||++++.=.- +.+.++.|-. ......+.....++ =-+--
T Consensus 245 l~GPPGtGktllaka~ane~~----------a~f~~inGPe------------------imsky~Ge~e~~lr~if~eae 296 (980)
T TIGR01243 245 LYGPPGTGKTLLAKAVANEAG----------AYFIAINGPE------------------IMSKYYGESEERLREIFKEAE 296 (980)
T ss_pred EECCCCCCHHHHHHHHHHHCC----------CEEEEECCCH------------------HHHHHCCCCHHHHHHHHHHHH
T ss_conf 755898617899999875305----------5178850603------------------443313630789999998653
Q ss_pred HCCCCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 279988998038785-----------98899999999971952301003078984701567522746
Q gi|254781026|r 79 LAHNGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 79 lAh~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
.---.|.|+||++-. .+.+..+|+.-|..= .-..+.++|+|+|-.
T Consensus 297 enaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGl-----------k~rG~v~viGatnrP 352 (980)
T TIGR01243 297 ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL-----------KGRGKVIVIGATNRP 352 (980)
T ss_pred HCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH-----------CCCCEEEEEECCCCC
T ss_conf 05870787412110076410000168899999999997400-----------248728998146885
No 386
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.20 E-value=0.021 Score=34.91 Aligned_cols=24 Identities=46% Similarity=0.562 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+|||||++.+.++++|-+
T Consensus 36 IvG~sGsGKSTLl~~i~G~~~~~~ 59 (204)
T cd03250 36 IVGPVGSGKSSLLSALLGELEKLS 59 (204)
T ss_pred EECCCCCCHHHHHHHHCCCCCCCC
T ss_conf 999999858999999818952568
No 387
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.19 E-value=0.023 Score=34.65 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=54.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHH-HHCEEECC---CCCCCCCCCCC--------------CC---------EE
Q ss_conf 977786059999999887488989788532-30000002---78887565311--------------12---------02
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLE-VSMIYSIS---GHSSHEYSFIQ--------------NR---------PF 53 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le-~~~i~s~~---g~~~~~~~~~~--------------~~---------p~ 53 (186)
++|+=|+|||||+|.|.++++|-+-.-.+- ...+.... .......++.. .+ -|
T Consensus 350 lvG~NGsGKSTLlk~l~G~l~p~~G~i~~g~~~~i~y~~Q~~~~l~~~~tv~~~l~~~~~~~~~~~~~r~~~~~L~~f~f 429 (632)
T PRK11147 350 LIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQYRAELDPEKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLF 429 (632)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEHHHHHHCCCCCCHHHHHHHCCHHCCCCHHHHHHHHHHHHHCC
T ss_conf 98898842779999860666899877998998707755154764597686999997323210115589999999998577
Q ss_pred ECCCCCCCHHHCCCCCCCCC-HHHHHHCCCCEEEEECH-HHCCHHHHHHHHHHHHCCCEEE
Q ss_conf 03775210011023434568-27998279988998038-7859889999999997195230
Q gi|254781026|r 54 RSPHHSVTIAALIGGGLQVL-PGEDSLAHNGVLFLDEI-PEFSPQTLNALRQPLETGECII 112 (186)
Q Consensus 54 ~~~~~~~~~~~l~gg~~~~~-pG~i~lAh~GVLflDE~-~e~~~~~l~~L~~~le~g~v~i 112 (186)
..-........+-||...-. =-.+...+-.||.+||= |.++-..+++|-++|.+..=++
T Consensus 430 ~~~~~~~~v~~LSGGEk~Rl~LA~~l~~~pnlLiLDEPTNhLDi~s~e~Le~aL~~y~Gtv 490 (632)
T PRK11147 430 HPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTL 490 (632)
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 9889639155399999999999998577997899989876579999999999998589839
No 388
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=94.19 E-value=0.026 Score=34.31 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.|.+.++++|-+
T Consensus 33 LIGPNGAGKSTLLk~I~Gll~P~~ 56 (409)
T PRK09536 33 VVGPNGAGKTTLLRAMNGLITPTA 56 (409)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999987279999999966888896
No 389
>PRK00625 shikimate kinase; Provisional
Probab=94.17 E-value=0.023 Score=34.60 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHH
Q ss_conf 97778605999999988748--8989788532
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLE 30 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le 30 (186)
|+|.+|+|||++.|.++..| |-++-++.+|
T Consensus 5 LIG~mGsGKStiGk~LA~~l~~~FvD~D~~Ie 36 (173)
T PRK00625 5 LCGLPTVGKTSFGKALAKFLSLPFFDTDDLIV 36 (173)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECHHHHH
T ss_conf 98999998899999999993999577499999
No 390
>PRK13768 GTPase; Provisional
Probab=94.17 E-value=0.023 Score=34.65 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
+||||+||||+.+++...+
T Consensus 8 iGpaGSGKsT~~~~l~~~l 26 (253)
T PRK13768 8 LGTAGSGKTTLVGALSDWL 26 (253)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 8999998899999999999
No 391
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.16 E-value=0.027 Score=34.25 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||+|.|.++++.||-+
T Consensus 34 itGPSG~GKStllk~va~Lisp~~ 57 (223)
T COG4619 34 ITGPSGCGKSTLLKIVASLISPTS 57 (223)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 767887668899999981369988
No 392
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.15 E-value=0.022 Score=34.71 Aligned_cols=84 Identities=24% Similarity=0.272 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH-H
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102343456827998-2
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS-L 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~-l 79 (186)
++||-|+||||++|.+.++++|-+-. + .+.+.. .. .....+-||...-..=+.+ .
T Consensus 31 l~G~NGsGKTTl~~~l~G~~~~~~G~-------i-~~~~~~---------~i-------~y~~QLSgGqkqr~~la~al~ 86 (144)
T cd03221 31 LVGRNGAGKSTLLKLIAGELEPDEGI-------V-TWGSTV---------KI-------GYFEQLSGGEKMRLALAKLLL 86 (144)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCEE-------E-EECCCC---------EE-------EEEHHCCHHHHHHHHHHHHHC
T ss_conf 99899984999999984898898509-------9-999960---------89-------987007999999999999972
Q ss_pred CCCCEEEEECH-HHCCHHHHHHHHHHHHCC
Q ss_conf 79988998038-785988999999999719
Q gi|254781026|r 80 AHNGVLFLDEI-PEFSPQTLNALRQPLETG 108 (186)
Q Consensus 80 Ah~GVLflDE~-~e~~~~~l~~L~~~le~g 108 (186)
.+--||++||- +-++....+.+.+-+.+.
T Consensus 87 ~~p~iliLDEPt~~LD~~~~~~i~~~l~~~ 116 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 599899995775558999999999999970
No 393
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.025 Score=34.44 Aligned_cols=24 Identities=38% Similarity=0.629 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-|+||||+.|.+.++++|-+
T Consensus 31 llG~NGaGKTTll~~i~Gl~~p~~ 54 (210)
T cd03269 31 LLGPNGAGKTTTIRMILGIILPDS 54 (210)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 998999849999999960026689
No 394
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.025 Score=34.42 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||++|.+.+++.|-+
T Consensus 33 iiG~nGaGKSTLl~~l~gl~~p~~ 56 (242)
T PRK11124 33 LLGPSGAGKSSLLRVLNLLEMPRS 56 (242)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999719999999965888886
No 395
>KOG2035 consensus
Probab=94.06 E-value=0.21 Score=29.06 Aligned_cols=64 Identities=27% Similarity=0.387 Sum_probs=45.5
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
..-|+.|-|.+++.++.+.+||--||.-.. .+.||..+|-- .|+
T Consensus 127 ~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~-------------~~RlIl~cns~-----------------------Sri 170 (351)
T KOG2035 127 PFKVVVINEADELTRDAQHALRRTMEKYSS-------------NCRLILVCNST-----------------------SRI 170 (351)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHHC-------------CCEEEEEECCC-----------------------CCC
T ss_conf 548999803576508899999999999860-------------71699992674-----------------------302
Q ss_pred CHHHHHCCCEEEECCCCCHHH
Q ss_conf 243210042599838856688
Q gi|254781026|r 161 SGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 161 s~plldR~Dl~v~~~~~~~~~ 181 (186)
-.|+.+|. +.|.+|+.++.+
T Consensus 171 IepIrSRC-l~iRvpaps~ee 190 (351)
T KOG2035 171 IEPIRSRC-LFIRVPAPSDEE 190 (351)
T ss_pred HHHHHHHE-EEEECCCCCHHH
T ss_conf 26776220-587678998789
No 396
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.05 E-value=0.024 Score=34.57 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
++||=|.|||||.|.+-++++|-+-
T Consensus 35 iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 35 LIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 9999888889999999678767742
No 397
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.05 E-value=0.023 Score=34.60 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+|||||++.+.++++|-+
T Consensus 35 ivG~sGsGKSTLl~ll~gl~~p~~ 58 (221)
T cd03244 35 IVGRTGSGKSSLLLALFRLVELSS 58 (221)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999989999999967971898
No 398
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=94.05 E-value=0.024 Score=34.57 Aligned_cols=117 Identities=24% Similarity=0.307 Sum_probs=61.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHH-HCCCCCCCCCHHHHHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001-1023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIA-ALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~-~l~gg~~~~~pG~i~l 79 (186)
|+||||+|||.||-++..-+ ++.. +++. + +..+....... +...+. ...=.-.+
T Consensus 52 l~G~~GtGKThLA~Ai~~~~--------~~~g--~~v~--------f-----~~~~~L~~~l~~~~~~~~--~~~~l~~~ 106 (178)
T pfam01695 52 LLGPPGVGKTHLACALGHQA--------CRAG--YSVL--------F-----TRTPDLVEQLKRARGDGR--LARTLQRL 106 (178)
T ss_pred EECCCCCCHHHHHHHHHHHH--------HHCC--CEEE--------E-----EECHHHHHHHHHHHHCCC--HHHHHHHH
T ss_conf 98999987899999999999--------9869--8599--------9-----961679999998752674--99999996
Q ss_pred CCCCEEEEECHHH--CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7998899803878--59889999999997195230100307898470156752274658878898876438999999998
Q gi|254781026|r 80 AHNGVLFLDEIPE--FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ 157 (186)
Q Consensus 80 Ah~GVLflDE~~e--~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~ 157 (186)
+.--+|.|||+.. .++...+.|.+.+++..- |. ..|-|+|-.+..|..--..
T Consensus 107 ~~~dlLIiDDlG~~~~s~~~~~~lf~li~~Rye---~~----------stIiTSN~~~~~W~~~~~d------------- 160 (178)
T pfam01695 107 AKADLLILDDIGYLPLSQEAAHLLFELISDRYE---RR----------STILTSNLPFGEWHEVFGD------------- 160 (178)
T ss_pred HCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHC---CC----------CEEEECCCCHHHHHHHCCC-------------
T ss_conf 258978872001656898999999999999975---68----------8687768997899876487-------------
Q ss_pred HHCCHHHHHCC
Q ss_conf 51224321004
Q gi|254781026|r 158 ARISGPLMDRI 168 (186)
Q Consensus 158 ~rls~plldR~ 168 (186)
..+..++|||+
T Consensus 161 ~~~a~AilDRl 171 (178)
T pfam01695 161 PTLATAILDRL 171 (178)
T ss_pred HHHHHHHHHHH
T ss_conf 68999999987
No 399
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.04 E-value=0.025 Score=34.44 Aligned_cols=110 Identities=23% Similarity=0.170 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHH-HHCEEECCC----CCCCCCCCCC----CC---------------EEECC
Q ss_conf 977786059999999887488989788532-300000027----8887565311----12---------------02037
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLE-VSMIYSISG----HSSHEYSFIQ----NR---------------PFRSP 56 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le-~~~i~s~~g----~~~~~~~~~~----~~---------------p~~~~ 56 (186)
++||-|+|||||+|.|.+.++|-+-.-.+- ..++....- ....+..... .. -|..-
T Consensus 343 IvG~NGsGKSTLlk~L~G~l~p~~G~i~~~~~v~igy~~Q~~~~~l~~~~t~l~~~~~~~~~~~~~~~r~~L~~f~f~~~ 422 (638)
T PRK10636 343 LLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD 422 (638)
T ss_pred EECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHH
T ss_conf 97478713889999972887888856998444433411076776506112499999885725469999999986688977
Q ss_pred CCCCCHHHCCCCCCCC-CHHHHHHCCCCEEEEECH-HHCCHHHHHHHHHHHHCCCE
Q ss_conf 7521001102343456-827998279988998038-78598899999999971952
Q gi|254781026|r 57 HHSVTIAALIGGGLQV-LPGEDSLAHNGVLFLDEI-PEFSPQTLNALRQPLETGEC 110 (186)
Q Consensus 57 ~~~~~~~~l~gg~~~~-~pG~i~lAh~GVLflDE~-~e~~~~~l~~L~~~le~g~v 110 (186)
........+-||...- .=-.+...+-.||.|||= |.++-..++.|-++|.+..=
T Consensus 423 ~~~~~v~~LSGGEk~Rl~LA~~l~~~pnlLiLDEPTNhLDi~s~e~Le~aL~~y~G 478 (638)
T PRK10636 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG 478 (638)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 86391133999999999999998259988998588766888999999999984898
No 400
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.02 E-value=0.024 Score=34.54 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-|+||||+.|.+.++++|-+
T Consensus 31 llG~NGaGKSTLl~~i~Gl~~p~~ 54 (208)
T cd03268 31 FLGPNGAGKTTTMKIILGLIKPDS 54 (208)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999999999999957837898
No 401
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.027 Score=34.28 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECC-CCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC--HHHH
Q ss_conf 97778605999999988748898978853230000002-78887565311120203775210011023434568--2799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSIS-GHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL--PGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~-g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~--pG~i 77 (186)
++|+-|+|||||++.+.++++|-+-.-.+.-..+.... .........+.+.|+-- ..+...--+-||...-. +-++
T Consensus 33 ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~tv~eNiLSgGq~Qri~lARal 111 (171)
T cd03228 33 IVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF-SGTIRENILSGGQRQRIAIARAL 111 (171)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCC-CCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999983999999997677589748999999988599899863189996668437-57799977448899999999999
Q ss_pred HHCCCCEEEEECHH-HCCHHHHHHHHHHHHC
Q ss_conf 82799889980387-8598899999999971
Q gi|254781026|r 78 SLAHNGVLFLDEIP-EFSPQTLNALRQPLET 107 (186)
Q Consensus 78 ~lAh~GVLflDE~~-e~~~~~l~~L~~~le~ 107 (186)
..+.-||.+||-. -+++.....+++.+.+
T Consensus 112 -~~~p~illlDEpts~LD~~~~~~i~~~l~~ 141 (171)
T cd03228 112 -LRDPPILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred -HHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf -748998999577667998999999999999
No 402
>KOG0066 consensus
Probab=94.02 E-value=0.17 Score=29.61 Aligned_cols=120 Identities=24% Similarity=0.283 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCE----------EECCCCCCCCCCC--------------CCCCEEECC
Q ss_conf 9777860599999998874889897885323000----------0002788875653--------------111202037
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMI----------YSISGHSSHEYSF--------------IQNRPFRSP 56 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i----------~s~~g~~~~~~~~--------------~~~~p~~~~ 56 (186)
.+||-|+|||||++.|.+-|-|-+- |.-....+ ..+.+.......+ ...--..++
T Consensus 618 IVGPNGVGKSTlLkLL~Gkl~P~~G-E~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sH 696 (807)
T KOG0066 618 IVGPNGVGKSTLLKLLIGKLDPNDG-ELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASH 696 (807)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCC-HHHCCCEEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 8788872388999999668788731-132163454420324567762455587999987529976999988503003322
Q ss_pred CCCCCHHHCCCCCCC-CCHHHHHHCCCCEEEEECH-HHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCE
Q ss_conf 752100110234345-6827998279988998038-78598899999999971952301003078984701
Q gi|254781026|r 57 HHSVTIAALIGGGLQ-VLPGEDSLAHNGVLFLDEI-PEFSPQTLNALRQPLETGECIIARANRKISYPSRI 125 (186)
Q Consensus 57 ~~~~~~~~l~gg~~~-~~pG~i~lAh~GVLflDE~-~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f 125 (186)
.|++....+.||... .---++.+.---||.|||- |-++-..+++|-++..+..- +-+.++|-+|.
T Consensus 697 AHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~G----gVi~VsHDeRL 763 (807)
T KOG0066 697 AHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNG----GVIMVSHDERL 763 (807)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC----CEEEEECCCCE
T ss_conf 51576542478505789999886179987985588877666657999999986068----27999635002
No 403
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.99 E-value=0.027 Score=34.20 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+|||||++.+.+++++-
T Consensus 35 liG~nGaGKSTL~~~l~G~~~~~ 57 (501)
T PRK10762 35 LVGENGAGKSTLMKVLTGIYTRD 57 (501)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98999982999999995799898
No 404
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=93.98 E-value=0.037 Score=33.47 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=83.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCC
Q ss_conf 77786059999999887488989788532300000027888756531112020377521001102343456827998279
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAH 81 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh 81 (186)
+|+--+|||||+++||.++..-.-.| =++-+.-.........+. ..--+.++-|.....-=++..||
T Consensus 181 lG~eStGKstLv~~lA~~~nt~~~~E---yar~y~e~~~ggDe~~L~----------~~dY~~~~~G~~~~~~~~v~~a~ 247 (346)
T TIGR01526 181 LGGESTGKSTLVNKLAEKLNTTSAWE---YAREYVEAKLGGDEIALQ----------YSDYARIVLGQIDYIDAAVRDAD 247 (346)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCCHH---HHHHHHHHHCCCCHHHHH----------CCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 55888636899999999846887125---655666651687214542----------03437876424667778630732
Q ss_pred -CCEEEEECHHHCCHHHHHHHH---------HHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf -988998038785988999999---------9997195230100307898470156752274658878898876438999
Q gi|254781026|r 82 -NGVLFLDEIPEFSPQTLNALR---------QPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPR 151 (186)
Q Consensus 82 -~GVLflDE~~e~~~~~l~~L~---------~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~ 151 (186)
.+|+|+|==.- ...+--.++ +|+.+.. ...+|=+.+|+-.=|- | |-+.+..|--+..
T Consensus 248 nq~v~f~DTD~i-~T~vfa~~y~G~eDfeql~P~~~~~--------i~~~r~DL~ll~~p~t-e---w~~Dg~R~l~~~~ 314 (346)
T TIGR01526 248 NQKVAFIDTDFI-TTQVFAKLYEGREDFEQLHPFLKKT--------IAEYRFDLTLLLKPNT-E---WVDDGLRSLGSEE 314 (346)
T ss_pred CCEEEEEECCHH-HHHHHHHHCCCCCCHHHCCHHHHHH--------HHHCCCCEEEEECCCC-C---EECCCCCCCCCHH
T ss_conf 374789847767-8999998707865544506278877--------6327884799727998-7---3428852077432
Q ss_pred HHHHHHHHCCHHHH--HCCCEEEECC
Q ss_conf 99999851224321--0042599838
Q gi|254781026|r 152 CATEYQARISGPLM--DRIDIRIAVP 175 (186)
Q Consensus 152 ~~~~Y~~rls~pll--dR~Dl~v~~~ 175 (186)
++...+.+|...|- .+-++.|..+
T Consensus 315 ~R~~F~~~l~~~L~~~~~~f~~v~~~ 340 (346)
T TIGR01526 315 SRKEFQELLERALAEFGLSFVVVEED 340 (346)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 27899999999999709946998338
No 405
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.98 E-value=0.025 Score=34.41 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
++|+.|+||||+|+.|+.-+.
T Consensus 4 v~GvsGsGKSTia~~La~~lg 24 (150)
T cd02021 4 VMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EECCCCCCHHHHHHHHHHHHC
T ss_conf 991899999999999999719
No 406
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.94 E-value=0.028 Score=34.18 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+.|+||||+++.+.++++|-
T Consensus 33 ivG~sGsGKSTll~ll~gl~~p~ 55 (237)
T cd03252 33 IVGRSGSGKSTLTKLIQRFYVPE 55 (237)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999985999999996776579
No 407
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.94 E-value=0.028 Score=34.13 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.+.+.++.+|-+
T Consensus 31 liGpNGaGKSTL~~~i~Gl~~p~~ 54 (230)
T TIGR03410 31 VLGRNGVGKTTLLKTLMGLLPVKS 54 (230)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999409999999977999995
No 408
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.92 E-value=0.029 Score=34.04 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+.+.+.++.+|-+
T Consensus 31 iiGpnGaGKSTl~~~i~Gl~~p~~ 54 (213)
T cd03259 31 LLGPSGCGKTTLLRLIAGLERPDS 54 (213)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999739999999975999897
No 409
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.92 E-value=0.028 Score=34.14 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
|+||-|+||||+.+.+.++++|-
T Consensus 52 LlGpNGaGKSTllk~l~Gl~~p~ 74 (236)
T cd03267 52 FIGPNGAGKTTTLKILSGLLQPT 74 (236)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999830999999996494887
No 410
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.89 E-value=0.028 Score=34.17 Aligned_cols=24 Identities=38% Similarity=0.753 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+.+.+.++++|-+
T Consensus 36 liGpnGaGKSTL~~~i~Gl~~p~~ 59 (255)
T PRK11300 36 LIGPNGAGKTTVFNCLTGFYKPTG 59 (255)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 998999649999999967988986
No 411
>PRK13764 ATPase; Provisional
Probab=93.89 E-value=0.029 Score=34.04 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHHHCC
Q ss_conf 77786059999999887488
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP 21 (186)
.|+||.||||+|++++..+-
T Consensus 265 aG~PGaGKsTfaqalA~~~~ 284 (605)
T PRK13764 265 AGAPGAGKSTFAQALAEFYA 284 (605)
T ss_pred ECCCCCCHHHHHHHHHHHHH
T ss_conf 77999977899999999998
No 412
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.88 E-value=0.031 Score=33.85 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=59.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHH-HHCEEECCC---CCCCCCCCC-----------------------CCCEE
Q ss_conf 977786059999999887488989788532-300000027---888756531-----------------------11202
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLE-VSMIYSISG---HSSHEYSFI-----------------------QNRPF 53 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le-~~~i~s~~g---~~~~~~~~~-----------------------~~~p~ 53 (186)
++|+-|+|||||+|.|.++++|-+-.-.+- ..++....- ......++. ..-.|
T Consensus 355 ivG~NGsGKSTLlk~l~G~~~p~~G~i~~g~~v~igy~~Q~~~~l~~~~tv~e~v~~~~~~~~~~~~e~~~r~~L~~f~~ 434 (556)
T PRK11819 355 IIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNF 434 (556)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98898775889999983865688855998996650322120542697684999874526665421677899999987078
Q ss_pred ECCCCCCCHHHCCCCCCC-CCHHHHHHCCCCEEEEEC-HHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCE
Q ss_conf 037752100110234345-682799827998899803-878598899999999971952301003078984701
Q gi|254781026|r 54 RSPHHSVTIAALIGGGLQ-VLPGEDSLAHNGVLFLDE-IPEFSPQTLNALRQPLETGECIIARANRKISYPSRI 125 (186)
Q Consensus 54 ~~~~~~~~~~~l~gg~~~-~~pG~i~lAh~GVLflDE-~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f 125 (186)
...........+-||... +.=..+...+--||++|| -|.++-..+++|-++|.+-.=++ +.++|--.|
T Consensus 435 ~~~~~~~~v~~LSGGek~Rv~lA~~l~~~p~lLiLDEPTn~LDi~s~e~Le~aL~~y~Gtv----l~VSHDr~f 504 (556)
T PRK11819 435 KGGDQQKKVGVLSGGERNRLHLAKTLKSGGNVLLLDEPTNDLDVETLRALEDALLEFPGCA----VVISHDRWF 504 (556)
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEE----EEEECCHHH
T ss_conf 7245519703188999999999999962989899929775679999999999998779969----999789999
No 413
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.84 E-value=0.03 Score=34.00 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||++.+.++++|-+
T Consensus 35 ivG~sGsGKSTLl~ll~gl~~p~~ 58 (220)
T cd03245 35 IIGRVGSGKSTLLKLLAGLYKPTS 58 (220)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999859999999967254786
No 414
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.03 Score=33.95 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-|+||||+.+-+.++++|-+
T Consensus 31 llGpNGAGKSTll~~i~Gl~~p~~ 54 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTTLLKPTS 54 (220)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999998719999999976978896
No 415
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=93.80 E-value=0.024 Score=34.57 Aligned_cols=24 Identities=50% Similarity=0.693 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
.|||-|+|||+|||-+-++-|+..
T Consensus 361 IIGPSgSGKStLaR~~vG~W~~~~ 384 (556)
T TIGR01842 361 IIGPSGSGKSTLARILVGIWPPAS 384 (556)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 874786525889878872101356
No 416
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.80 E-value=0.03 Score=34.00 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+.|+|||||++.|.+++.|-+
T Consensus 34 IvG~sGsGKSTLl~ll~gl~~p~~ 57 (238)
T cd03249 34 LVGSSGCGKSTVVSLLERFYDPTS 57 (238)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 999999989999999823861885
No 417
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=93.79 E-value=0.027 Score=34.25 Aligned_cols=21 Identities=43% Similarity=0.803 Sum_probs=18.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
++||-|.|||||.|++-.|--
T Consensus 33 ~IG~SGAGKSTLLR~iNrL~~ 53 (253)
T TIGR02315 33 VIGPSGAGKSTLLRCINRLVE 53 (253)
T ss_pred EECCCCCCHHHHHHHHHHHCC
T ss_conf 973788726799987753026
No 418
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.75 E-value=0.03 Score=34.00 Aligned_cols=95 Identities=26% Similarity=0.305 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHH-
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568279982-
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSL- 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~l- 79 (186)
++||-|+||||+.|.+.++++|-+-. + .+.|....... ....+. ........+-||...-..=+-++
T Consensus 31 lvG~nGaGKSTl~~~i~Gl~~p~~G~-------i-~i~G~~i~~~~---~~~~~~-~gi~~v~qLSgG~~Qrv~iaral~ 98 (163)
T cd03216 31 LLGENGAGKSTLMKILSGLYKPDSGE-------I-LVDGKEVSFAS---PRDARR-AGIAMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCE-------E-EECCEECCCCC---HHHHHH-CCCCEECCCCHHHHHHHHHHHHHH
T ss_conf 99889989999999995776898578-------9-99999999999---999998-799489469989999999999997
Q ss_pred CCCCEEEEECHH-HCCHHHHHHHHHHHHC
Q ss_conf 799889980387-8598899999999971
Q gi|254781026|r 80 AHNGVLFLDEIP-EFSPQTLNALRQPLET 107 (186)
Q Consensus 80 Ah~GVLflDE~~-e~~~~~l~~L~~~le~ 107 (186)
.+--+|++||=- -+++...+.+++-+.+
T Consensus 99 ~~p~llilDEPt~gLD~~~~~~i~~~l~~ 127 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 29999999097557999999999999999
No 419
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.73 E-value=0.033 Score=33.71 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+|||||++.+.++++|-+
T Consensus 52 IvG~sGsGKSTL~~ll~gl~~p~~ 75 (257)
T cd03288 52 ICGRTGSGKSSLSLAFFRMVDIFD 75 (257)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 999999819999999960566788
No 420
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=93.73 E-value=0.032 Score=33.82 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+||||+++.+.++++|-
T Consensus 29 liG~nGsGKSTL~~~l~Gl~~~~ 51 (491)
T PRK10982 29 LMGENGAGKSTLLKCLFGIYQKD 51 (491)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98999981999999995698899
No 421
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.71 E-value=0.032 Score=33.81 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-|+||||+.+.+.++++|-+
T Consensus 31 llGpNGAGKSTll~~i~Gl~~p~~ 54 (232)
T cd03218 31 LLGPNGAGKTTTFYMIVGLVKPDS 54 (232)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999619999999977999986
No 422
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.70 E-value=0.035 Score=33.60 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++|+-|+|||||++.|.+++++
T Consensus 35 IvG~sGsGKSTLl~lL~gl~~~ 56 (275)
T cd03289 35 LLGRTGSGKSTLLSAFLRLLNT 56 (275)
T ss_pred EECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999799999999603578
No 423
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.036 Score=33.49 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+|+-|+|||||++.+.+++||-+
T Consensus 36 liG~nGaGKSTL~~~l~G~~~~~~ 59 (510)
T PRK09700 36 LLGENGAGKSTLMKVLSGIHEPTK 59 (510)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 989999729999999837998985
No 424
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.66 E-value=0.039 Score=33.32 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7778605999999988748
Q gi|254781026|r 2 IGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iL 20 (186)
.|++|+||||+|+.+..+|
T Consensus 5 aG~sgSGKST~a~~l~~~l 23 (220)
T cd02025 5 AGSVAVGKSTTARVLQALL 23 (220)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 8899877999999999986
No 425
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.65 E-value=0.036 Score=33.51 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||.|+|||||++-+..+.+|-+
T Consensus 366 iVG~SGsGKSTL~~LL~gly~p~~ 389 (585)
T PRK13657 366 IVGPTGAGKSTLINLLHRVFDPQS 389 (585)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 988989869999999860157887
No 426
>PRK08116 hypothetical protein; Validated
Probab=93.59 E-value=0.03 Score=33.95 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHH--HH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568279--98
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGE--DS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~--i~ 78 (186)
|.|+||+|||.||-+++.-|- + .|. ...++..+. ................-.+ =.
T Consensus 113 l~G~~GtGKThLa~aIa~~l~--------~-------~g~---~V~~~~~~~-----ll~~lk~~~~~~~~~~~~e~l~~ 169 (262)
T PRK08116 113 LWGSPGNGKTYLAAAIANELI--------E-------KGV---PVVFVNVPE-----LLNRIKSTYNSEGKEDENEIIRA 169 (262)
T ss_pred EECCCCCCHHHHHHHHHHHHH--------H-------CCC---EEEEEEHHH-----HHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 989899989999999999999--------8-------799---399988999-----99999999863561019999998
Q ss_pred HCCCCEEEEECHHH--CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 27998899803878--5988999999999719523010030789847015675227465887889887643899999999
Q gi|254781026|r 79 LAHNGVLFLDEIPE--FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEY 156 (186)
Q Consensus 79 lAh~GVLflDE~~e--~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y 156 (186)
+.+--+|.||+++- .+.-..+.|.+.+..... ..--.|-|+|--+ .+ .
T Consensus 170 l~~~dLLIiDDlG~e~~t~w~~e~lf~IIn~Ry~------------~~kptIiTTNl~~---------------~e---L 219 (262)
T PRK08116 170 LDNADLLILDDLGAEKDTEWVREKLYNIIDSRYR------------KGLPTIFTTNLSL---------------EE---L 219 (262)
T ss_pred HHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHH------------CCCCEEEECCCCH---------------HH---H
T ss_conf 6129989983221456987899999999999997------------6999899879999---------------99---9
Q ss_pred HHHCCHHHHHCC-CEE--EECCCCC
Q ss_conf 851224321004-259--9838856
Q gi|254781026|r 157 QARISGPLMDRI-DIR--IAVPSRT 178 (186)
Q Consensus 157 ~~rls~plldR~-Dl~--v~~~~~~ 178 (186)
..+++..+.||+ ... |.+...+
T Consensus 220 ~~~~~~Ri~sRl~e~~~~v~~~G~d 244 (262)
T PRK08116 220 KNQYGKRTYSRILEMCTPVKNEGKS 244 (262)
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf 9986379999998677899851778
No 427
>PRK06696 uridine kinase; Validated
Probab=93.58 E-value=0.033 Score=33.69 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHHHHCC
Q ss_conf 77786059999999887488
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP 21 (186)
-|++|+||||+|+.|+..|.
T Consensus 32 dG~~gSGKTTlA~~La~~L~ 51 (227)
T PRK06696 32 DGITASGKTTFANELAEEIK 51 (227)
T ss_pred ECCCCCCHHHHHHHHHHHHH
T ss_conf 78998787999999999997
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.53 E-value=0.034 Score=33.66 Aligned_cols=77 Identities=14% Similarity=0.273 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCC--CCCHHHCCCCC--CCCCHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775--21001102343--4568279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHH--SVTIAALIGGG--LQVLPGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~--~~~~~~l~gg~--~~~~pG~ 76 (186)
|+||+|+||||-.-.|+.-. .. -......++++.-.+|--.+ .-+.+.+.|-. ....|.+
T Consensus 181 lVGPTGVGKTTTiAKLAAr~---------------~l-~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~e 244 (404)
T PRK06995 181 LVGPTGVGKTTTTAKLAARC---------------VM-RHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD 244 (404)
T ss_pred EECCCCCCHHHHHHHHHHHH---------------HH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 86688876375899999999---------------99-838983799976875478999999999875955999599999
Q ss_pred H-----HHCCCCEEEEECHHHC
Q ss_conf 9-----8279988998038785
Q gi|254781026|r 77 D-----SLAHNGVLFLDEIPEF 93 (186)
Q Consensus 77 i-----~lAh~GVLflDE~~e~ 93 (186)
+ .+++.-+.|||=.+.=
T Consensus 245 L~~aL~~l~~~dlILIDTaGrs 266 (404)
T PRK06995 245 LRLALAELRNKHIVLIDTVGMS 266 (404)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999997089999998099989
No 429
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.53 E-value=0.035 Score=33.60 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
|+||-|.||||+.|.+.+++.|-
T Consensus 36 llG~NGAGKTTllk~l~Gl~~p~ 58 (293)
T COG1131 36 LLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98999998999999996797788
No 430
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.50 E-value=0.035 Score=33.57 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=26.7
Q ss_pred CCCEEEEECH-----HHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCE
Q ss_conf 9988998038-----78598899999999971952301003078984701
Q gi|254781026|r 81 HNGVLFLDEI-----PEFSPQTLNALRQPLETGECIIARANRKISYPSRI 125 (186)
Q Consensus 81 h~GVLflDE~-----~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f 125 (186)
+--|+.+||- +|+-..+++.+.+-.++|.-- +.+||.-.|
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTM-----ivVTHEM~F 198 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM-----IIVTHEMGF 198 (240)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEE-----EEEECHHHH
T ss_conf 998886369754379889999999999999769869-----999503679
No 431
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.47 E-value=0.035 Score=33.60 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.7
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
|+|-||+||||+|+.+..-|
T Consensus 12 ~TGLsGSGKTTiA~~l~~~L 31 (176)
T PRK05541 12 ITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 78999998999999999999
No 432
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.46 E-value=0.04 Score=33.23 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++|+-|+||||+++.+.+++|.
T Consensus 38 ivGeSGsGKSTl~~~ilgll~~ 59 (327)
T PRK11022 38 IVGESGSGKSVSSLAIMGLIDY 59 (327)
T ss_pred EECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999987899999999748898
No 433
>PRK10744 phosphate transporter subunit; Provisional
Probab=93.46 E-value=0.037 Score=33.41 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
++||-|+||||++|.+.++.+
T Consensus 41 liG~nGaGKSTLlk~i~gl~~ 61 (257)
T PRK10744 41 FIGPSGCGKSTLLRTFNKMYE 61 (257)
T ss_pred EECCCCCCHHHHHHHHHHHHC
T ss_conf 999999819999999987651
No 434
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=93.46 E-value=0.044 Score=33.01 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
|+|.||+|||+|.+.+..-+
T Consensus 39 fmsspGSGKT~LiEk~~~~~ 58 (225)
T TIGR00073 39 FMSSPGSGKTTLIEKLIERL 58 (225)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 02588611589999999984
No 435
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=93.45 E-value=0.039 Score=33.28 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+||||+++.+.+++|+.
T Consensus 47 LvGeSGSGKSTl~~~l~gll~~~ 69 (623)
T PRK10261 47 IVGESGSGKSVTALALMRLLEQA 69 (623)
T ss_pred EECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99899978999999997798788
No 436
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=93.44 E-value=0.034 Score=33.65 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++||-|+||||+..++++++|.
T Consensus 30 liGPNGaGKSTLLA~lAGm~~~ 51 (248)
T COG4138 30 LVGPNGAGKSTLLARMAGMTSG 51 (248)
T ss_pred EECCCCCCHHHHHHHHHCCCCC
T ss_conf 9878986588999998477888
No 437
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.43 E-value=0.038 Score=33.37 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=34.1
Q ss_pred HCCCCEEEEECHH-----HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEE
Q ss_conf 2799889980387-----859889999999997195230100307898470156752
Q gi|254781026|r 79 LAHNGVLFLDEIP-----EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130 (186)
Q Consensus 79 lAh~GVLflDE~~-----e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa 130 (186)
+.+--||.+||.. +-...+++.|++..++.++-+---+.+..-.||-++|.-
T Consensus 467 l~~p~iliLDEaTSaLD~~tE~~i~~~l~~~~~~~T~i~IaHRlsti~~aD~I~vl~ 523 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEIIVMQ 523 (569)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEE
T ss_conf 549998998087666899999999999999749998999715888898599899998
No 438
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.41 E-value=0.031 Score=33.91 Aligned_cols=26 Identities=46% Similarity=0.580 Sum_probs=22.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHH
Q ss_conf 97778605999999988748898978
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLE 26 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~ 26 (186)
.|||-|+|||+|+|.+.++-||..-.
T Consensus 367 IIGPSgSGKSTLaR~lvG~w~p~~G~ 392 (580)
T COG4618 367 IIGPSGSGKSTLARLLVGIWPPTSGS 392 (580)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 87888765778999998113567873
No 439
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.40 E-value=0.037 Score=33.44 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+.+.+.++++|-+
T Consensus 33 liGpNGaGKSTLl~~i~Gl~~p~~ 56 (242)
T TIGR03411 33 IIGPNGAGKTTMMDVITGKTRPDE 56 (242)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 998999759999999967957885
No 440
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.40 E-value=0.039 Score=33.29 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
.+|+-|+|||||++.+.++++|-+
T Consensus 33 IvG~sGsGKSTLl~ll~gl~~p~~ 56 (234)
T cd03251 33 LVGPSGSGKSTLVNLIPRFYDVDS 56 (234)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 998999829999999966766788
No 441
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.39 E-value=0.031 Score=33.90 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+.|+|||||+|-+.++.+|-+
T Consensus 496 IvG~sGsGKSTL~kll~Gl~~p~~ 519 (694)
T TIGR03375 496 IIGRIGSGKSTLLKLLLGLYQPTE 519 (694)
T ss_pred EEECCCCCHHHHHHHHCCCCCCCC
T ss_conf 980589878899998556758998
No 442
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=93.36 E-value=0.074 Score=31.66 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=30.1
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCC---EEEHHCCEEEEECCCEE
Q ss_conf 799889980387859889999999997195---23010030789847015
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGE---CIIARANRKISYPSRIQ 126 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~---v~i~R~g~~~~~Pa~f~ 126 (186)
-.--||.|||+.=++...++.|...|.+=. ...-=+|+.+-+=-||.
T Consensus 73 ~~~~vLIIDEiSMv~~~lfd~id~~lr~i~~~~~~~PFGGiqvIl~GDf~ 122 (418)
T pfam05970 73 KKASLIIWDEAPMTHRHCFEALDRTLRDILKNTDDKPFGGKTVVLGGDFR 122 (418)
T ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHH
T ss_conf 40879998541135789999999999998712787677974799824476
No 443
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=93.34 E-value=0.13 Score=30.23 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
++|+|.+|||+|.+++.+-=+
T Consensus 5 LVG~PN~GKSTLln~LT~a~~ 25 (233)
T cd01896 5 LVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999999999978995
No 444
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.32 E-value=0.04 Score=33.24 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||=|+|||||.|.+.+++.|-+
T Consensus 31 i~G~NGsGKSTLlk~i~Gl~~p~~ 54 (195)
T PRK13541 31 IKGANGCGKSSLLRMIAGIMQPSS 54 (195)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999819999999967988984
No 445
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.30 E-value=0.044 Score=33.01 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++|+-|+|||||+|.+..+.+|-+
T Consensus 36 iIG~SGaGKSTLlr~i~gL~~pts 59 (343)
T PRK11153 36 VIGASGAGKSTLIRCVNLLERPTS 59 (343)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999869999999965999996
No 446
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.30 E-value=0.04 Score=33.23 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++||-|+|||||.+.+.++++|-
T Consensus 31 liG~nGaGKSTL~~~i~Gl~~p~ 53 (236)
T cd03219 31 LIGPNGAGKTTLFNLISGFLRPT 53 (236)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99899973999999996798788
No 447
>PRK13409 putative ATPase RIL; Provisional
Probab=93.29 E-value=0.038 Score=33.37 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
|+||=|+||||+.|-|++.|-|
T Consensus 104 LiG~NGaGKST~lkILsG~l~P 125 (590)
T PRK13409 104 ILGPNGIGKSTAVKILSGELIP 125 (590)
T ss_pred EECCCCCCHHHHHHHHHCCCCC
T ss_conf 8899999899999999587148
No 448
>KOG0651 consensus
Probab=93.29 E-value=0.045 Score=32.95 Aligned_cols=99 Identities=23% Similarity=0.351 Sum_probs=49.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
+.||||+|||.+||.+++-|- +..+..+++.......--. .-.....+.-.....|
T Consensus 171 l~GppGtGKTlla~~Vaa~mg---------~nfl~v~ss~lv~kyiGEs---------aRlIRemf~yA~~~~p------ 226 (388)
T KOG0651 171 LYGPPGTGKTLLARAVAATMG---------VNFLKVVSSALVDKYIGES---------ARLIRDMFRYAREVIP------ 226 (388)
T ss_pred EECCCCCCHHHHHHHHHHHCC---------CCEEEEEHHHHHHHHCCCH---------HHHHHHHHHHHHHHCC------
T ss_conf 767999864599999998659---------8547744766633002657---------8899999977865275------
Q ss_pred CCCEEEEECHHH-----------CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 998899803878-----------59889999999997195230100307898470156752274
Q gi|254781026|r 81 HNGVLFLDEIPE-----------FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 81 h~GVLflDE~~e-----------~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
.|+|+||++- -++.++..|.+-+. |. .....-.+.-+|+|+|-
T Consensus 227 --ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLln-qm-------dgfd~l~rVk~ImatNr 280 (388)
T KOG0651 227 --CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLN-QM-------DGFDTLHRVKTIMATNR 280 (388)
T ss_pred --EEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHH-HH-------CCCHHCCCCCEEEECCC
T ss_conf --57751012311457733555205999999999987-42-------14012066317985388
No 449
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.28 E-value=0.043 Score=33.05 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
+.||||+|||-||=.++.=|=
T Consensus 70 i~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 70 IVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred EECCCCCCHHHHHHHHHHHHC
T ss_conf 978999768899999999858
No 450
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=93.27 E-value=0.22 Score=28.88 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCCEEEEECHHHCCHH--------HHHHHHHHHHCCCEEE
Q ss_conf 9988998038785988--------9999999997195230
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQ--------TLNALRQPLETGECII 112 (186)
Q Consensus 81 h~GVLflDE~~e~~~~--------~l~~L~~~le~g~v~i 112 (186)
|--|+.+||...+... --+.|.+.|....+.|
T Consensus 79 ~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~a~v~V 118 (348)
T pfam09848 79 HEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKRAKVVV 118 (348)
T ss_pred CCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEE
T ss_conf 6778998317866543365567785799999997528599
No 451
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=93.27 E-value=0.036 Score=33.51 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
++||-|.|||++.|.+.-++
T Consensus 26 ItGpN~sGKSt~Lr~i~l~~ 45 (162)
T cd03227 26 ITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 98998775799999999999
No 452
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=93.24 E-value=0.041 Score=33.16 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=18.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
|.||||||||-+|-+++.-|=
T Consensus 55 laGppGTGKTAlA~aiakeLG 75 (395)
T pfam06068 55 IAGPPGTGKTALAIAISKELG 75 (395)
T ss_pred EECCCCCCHHHHHHHHHHHHC
T ss_conf 877999888999999999748
No 453
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.23 E-value=0.023 Score=34.64 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.+.++++|-+
T Consensus 31 liG~nGaGKSTll~~l~G~~~p~~ 54 (182)
T cd03215 31 IAGLVGNGQTELAEALFGLRPPAS 54 (182)
T ss_pred EECCCCCCCCHHHHHHCCCCCCCC
T ss_conf 988899992637787669867887
No 454
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.14 E-value=0.04 Score=33.22 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97778605999999988
Q gi|254781026|r 1 MIGPPGARKSMLASCLP 17 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~ 17 (186)
+.||||+|||+++-.+.
T Consensus 4 i~G~pGsGKT~~a~qfl 20 (187)
T cd01124 4 LSGGPGTGKTTFALQFL 20 (187)
T ss_pred EEECCCCCHHHHHHHHH
T ss_conf 87689999999999999
No 455
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=93.14 E-value=0.05 Score=32.68 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
|.|.-|+|||||||-|-+|=-|
T Consensus 43 LLG~SG~GKSTLArlLlGLe~P 64 (267)
T TIGR02769 43 LLGRSGCGKSTLARLLLGLEKP 64 (267)
T ss_pred ECCCCCCCHHHHHHHHHHCCCC
T ss_conf 2367887377899998750788
No 456
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.14 E-value=0.055 Score=32.42 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++||+|+||++|+++|..-.|.
T Consensus 6 l~GpsG~GK~tl~~~l~~~~~~ 27 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EECCCCCCHHHHHHHHHHHCCC
T ss_conf 9899988999999999976899
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.12 E-value=0.05 Score=32.68 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=18.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9777860599999998874889
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~ 22 (186)
++||.|+||++++++|...+|.
T Consensus 4 i~GPSG~GK~tl~~~L~~~~~~ 25 (137)
T cd00071 4 LSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999988999999999851987
No 458
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.11 E-value=0.054 Score=32.49 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+||||+++.+..+|+..+
T Consensus 27 IvGpsGsGKSTLl~~i~~~lg~~~ 50 (197)
T cd03278 27 IVGPNGSGKSNIIDAIRWVLGEQS 50 (197)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999999988999999998747776
No 459
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.10 E-value=0.057 Score=32.35 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=64.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-H--
Q ss_conf 7778605999999988748898978853230000002788875653111202037752100110234345682799-8--
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-S-- 78 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~-- 78 (186)
.|++|+|||++++++...+|+-.. +-.+ .........++... +..+.....++......-.+ .
T Consensus 31 sG~tGSGKTTll~al~~~i~~~~r--------ivti---Ed~~El~l~~~~~v---~l~~~~~~~~~~~~~~~~~li~~a 96 (186)
T cd01130 31 SGGTGSGKTTLLNALLAFIPPDER--------IITI---EDTAELQLPHPNWV---RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCC--------EEEE---CCCHHHCCCCCCEE---EEEEECCCCCCCCEECHHHHHHHH
T ss_conf 899999899999999961334564--------5984---15354047777568---888604645786503499998873
Q ss_pred -HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE-EE--HHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf -27998899803878598899999999971952-30--100307898470156752274658878898876438999999
Q gi|254781026|r 79 -LAHNGVLFLDEIPEFSPQTLNALRQPLETGEC-II--ARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCAT 154 (186)
Q Consensus 79 -lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v-~i--~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~ 154 (186)
+-+--.+++-|+- .+.+.+ +.+++..|.. .+ --++....-..|+...+++.+- +...++
T Consensus 97 LR~~pd~iivGEiR--~~Ea~~-~l~a~~tGh~g~ltTiHa~s~~~ai~Rl~~l~~~~~~--------------~~~~~~ 159 (186)
T cd01130 97 LRMRPDRIIVGEVR--GGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPL--------------GRPLLR 159 (186)
T ss_pred CCCCCCEEECCCCC--CHHHHH-HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------------CHHHHH
T ss_conf 66899737317568--399999-9999974898603031589999999999988754799--------------999999
Q ss_pred HHHHHCCHHHHHCCCEEEECCCCC
Q ss_conf 998512243210042599838856
Q gi|254781026|r 155 EYQARISGPLMDRIDIRIAVPSRT 178 (186)
Q Consensus 155 ~Y~~rls~plldR~Dl~v~~~~~~ 178 (186)
.=+.+.||+.|++..+.
T Consensus 160 -------~~ia~~id~vV~~~~~~ 176 (186)
T cd01130 160 -------EQIKEAIDVIVHIARLK 176 (186)
T ss_pred -------HHHHHHCCEEEEEEEEC
T ss_conf -------99997577999998876
No 460
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=93.10 E-value=0.043 Score=33.05 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=26.2
Q ss_pred CCCCEEEEEC----HHHCCHH-HHHHHHHHHHCCCEEE
Q ss_conf 7998899803----8785988-9999999997195230
Q gi|254781026|r 80 AHNGVLFLDE----IPEFSPQ-TLNALRQPLETGECII 112 (186)
Q Consensus 80 Ah~GVLflDE----~~e~~~~-~l~~L~~~le~g~v~i 112 (186)
++.=||.||| ++--++. |+|.+.++-.+|.--|
T Consensus 166 ~d~PiLLLdEPTASLd~~nr~vVvELi~e~K~~G~Ali 203 (224)
T TIGR02324 166 ADYPILLLDEPTASLDATNRKVVVELIAEAKARGAALI 203 (224)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 57740011355402411424889999999976597689
No 461
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.10 E-value=0.045 Score=32.95 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-|+||||+.+.+.++++|-+
T Consensus 38 llGpNGAGKSTli~~l~Gl~~p~s 61 (306)
T PRK13536 38 LLGPNGAGKSTIARMILGMTSPDA 61 (306)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999989809999999967957898
No 462
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.07 E-value=0.045 Score=32.94 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-|.||||+.+.+.++++|-+
T Consensus 33 llGpNGAGKTTl~~~l~Gl~~p~~ 56 (301)
T TIGR03522 33 FLGPNGAGKSTTMKIITGYLPPDS 56 (301)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999819999999967956897
No 463
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.05 E-value=0.057 Score=32.33 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=32.2
Q ss_pred HCCCCEEEEECHH-----HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEE
Q ss_conf 2799889980387-----859889999999997195230100307898470156752
Q gi|254781026|r 79 LAHNGVLFLDEIP-----EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130 (186)
Q Consensus 79 lAh~GVLflDE~~-----e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa 130 (186)
+.+--||.+||.. +-...++++|.+.+++.++-+---+.+.-..||-++|.-
T Consensus 492 l~~p~iliLDEaTSaLD~~tE~~i~~~l~~~~~~~T~i~IaHRlsti~~aD~I~vl~ 548 (593)
T PRK10790 492 VETPQILILDEATASIDSGTEQAIQQALAAIREHTTLVVIAHRLSTIVEADTILVLH 548 (593)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEE
T ss_conf 559899998387778899999999999999728998999707898999699999998
No 464
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.04 E-value=0.052 Score=32.58 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=18.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
|.|-||+|||+|||+|..-++
T Consensus 4 LcGLPaAGKTTLar~L~~~l~ 24 (340)
T TIGR03575 4 LCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred ECCCCCCCHHHHHHHHHHHHH
T ss_conf 326987873689999999986
No 465
>PTZ00243 ABC transporter; Provisional
Probab=93.03 E-value=0.19 Score=29.33 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 77786059999999887488989
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
+||-|+|||+|..+|-+=|+..+
T Consensus 692 vG~vGSGKSSLL~aiLGE~~~~~ 714 (1560)
T PTZ00243 692 LGATGSGKSTLLQSLLSQFEISE 714 (1560)
T ss_pred ECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 89999879999999968884356
No 466
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=93.02 E-value=0.041 Score=33.20 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+|+=|+|||||.+.|.++|=|-+
T Consensus 23 LlG~NGaGKsTLl~~LnG~LrP~~ 46 (190)
T TIGR01166 23 LLGANGAGKSTLLLHLNGLLRPQS 46 (190)
T ss_pred EECCCCCCHHHHHHHHCCCCCCCC
T ss_conf 872899857899887436777975
No 467
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=93.01 E-value=0.047 Score=32.82 Aligned_cols=101 Identities=24% Similarity=0.261 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCC----------CC--CCHHHCC---
Q ss_conf 77786059999999887488989788532300000027888756531112020377----------52--1001102---
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPH----------HS--VTIAALI--- 66 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~----------~~--~~~~~l~--- 66 (186)
.|+.|+|||+|.|.+++|=|=-+-. |..- ...+..+..++|.-..+ .. .+.+.+.
T Consensus 425 ~G~SG~GKTsLlRaiaGLWP~g~G~-------I~~P---~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 425 TGESGAGKTSLLRALAGLWPWGSGR-------ISMP---ADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred ECCCCCCHHHHHHHHHCCCCCCCCC-------EECC---CCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 7899987889999996458567874-------4168---98755771488777876589998089997779959999999
Q ss_pred ------------C--CCC--CCCHHH--------HHHCCCCEEEEECHHH-CCHHHHHHHHHHHHC--CCEEE
Q ss_conf ------------3--434--568279--------9827998899803878-598899999999971--95230
Q gi|254781026|r 67 ------------G--GGL--QVLPGE--------DSLAHNGVLFLDEIPE-FSPQTLNALRQPLET--GECII 112 (186)
Q Consensus 67 ------------g--g~~--~~~pG~--------i~lAh~GVLflDE~~e-~~~~~l~~L~~~le~--g~v~i 112 (186)
. ..| .+-+|| +-+--=.++||||.-. ++....+.|+|.+.+ -.++|
T Consensus 495 ~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tv 567 (604)
T COG4178 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATV 567 (604)
T ss_pred HHCCCHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 9819198999873327576645852789999999997099989980601125957899999999854899789
No 468
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.01 E-value=0.048 Score=32.79 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|+|||||.+.+.++++|-+
T Consensus 36 liG~NGaGKSTLl~~i~G~~~~~~ 59 (237)
T PRK11614 36 LIGANGAGKTTLLGTLCGDPRATS 59 (237)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 987999759999999967998896
No 469
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=93.00 E-value=0.051 Score=32.60 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=25.1
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHHHHC
Q ss_conf 97778605999999988748--8989788532300
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLEVSM 33 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le~~~ 33 (186)
|+|++|+|||++.|.++..| |-.+-++.+|...
T Consensus 5 LiG~mGaGKTtvGr~LA~~L~~~FvD~D~~Ie~~~ 39 (488)
T PRK13951 5 LVGMMGSGKSTIGKRISEVLDLQFIDMDEEIERRE 39 (488)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHH
T ss_conf 98999998779999999983979564779999985
No 470
>KOG0730 consensus
Probab=93.00 E-value=0.057 Score=32.32 Aligned_cols=18 Identities=33% Similarity=0.811 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 977786059999999887
Q gi|254781026|r 1 MIGPPGARKSMLASCLPS 18 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~ 18 (186)
|.||||+|||+++++++.
T Consensus 223 l~gppg~Gkt~l~~aVa~ 240 (693)
T KOG0730 223 LYGPPGTGKTFLVRAVAN 240 (693)
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 438999981899999999
No 471
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.93 E-value=0.049 Score=32.73 Aligned_cols=109 Identities=18% Similarity=0.251 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCC-CCCCCCCCCEEE--CCCCCCCHH-------------H
Q ss_conf 977786059999999887488989788532300000027888-756531112020--377521001-------------1
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSS-HEYSFIQNRPFR--SPHHSVTIA-------------A 64 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~-~~~~~~~~~p~~--~~~~~~~~~-------------~ 64 (186)
++|+=|+|||||.|-|++|++|-+-.-...-. .++.+... ....+....... ..-...+.. .
T Consensus 55 IIG~NGAGKSTLLKiIaGI~~PTsG~V~V~Gk--~sLL~lgaGf~~eLTGrENI~L~g~~lGlsk~eI~~~~deIiEFAE 132 (549)
T PRK13545 55 IVGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS--AALIAISSGLNGQLTGIENIELKGLMMGITKEKIKEIIPEIIDFAD 132 (549)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCEEEEECCE--EEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 98899998999999996898898608999468--9877405576977629999998899849899999998999999856
Q ss_pred C----------CCCCCCCCHH-HH-HHCCCCEEEEECHH-----HCCHHHHHHHHHHHHCCCEE
Q ss_conf 0----------2343456827-99-82799889980387-----85988999999999719523
Q gi|254781026|r 65 L----------IGGGLQVLPG-ED-SLAHNGVLFLDEIP-----EFSPQTLNALRQPLETGECI 111 (186)
Q Consensus 65 l----------~gg~~~~~pG-~i-~lAh~GVLflDE~~-----e~~~~~l~~L~~~le~g~v~ 111 (186)
+ ...|+..+-| ++ +.-+--||.+||.. .|.....+.+.+-+++|...
T Consensus 133 LGdFid~PVKtYSSGMkaRLgFAIA~~~dPDILIIDEaLSVGD~~F~~Kc~~rm~ef~e~gkTI 196 (549)
T PRK13545 133 IGKFMYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI 196 (549)
T ss_pred HHHHHHCHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 7888738263408868999999999824999999946200578999999999999999789889
No 472
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=92.92 E-value=0.046 Score=32.87 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 977786059999999887
Q gi|254781026|r 1 MIGPPGARKSMLASCLPS 18 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~ 18 (186)
++||-|+|||||++.+.+
T Consensus 37 iiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 37 IMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred EECCCCCCHHHHHHHHCC
T ss_conf 999999999999999727
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.92 E-value=0.067 Score=31.92 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCC
Q ss_conf 777860599999998874889
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~ 22 (186)
.|++|+||||+|+.|...|+.
T Consensus 5 ~G~sgsGKTT~a~~L~~~l~~ 25 (198)
T cd02023 5 AGGSGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred ECCCCCCHHHHHHHHHHHHCC
T ss_conf 899988599999999998099
No 474
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=92.90 E-value=0.063 Score=32.08 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCC
Q ss_conf 777860599999998874889
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLP 22 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~ 22 (186)
.|+.|+||||+|+.|...|..
T Consensus 5 aG~SgSGKTT~a~~L~~~l~~ 25 (196)
T pfam00485 5 AGSSGAGKTTVARTFVSIFGR 25 (196)
T ss_pred ECCCCCCHHHHHHHHHHHHCC
T ss_conf 899857199999999999660
No 475
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=92.89 E-value=0.049 Score=32.70 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+||-|.||||+.|.+.++++|-+
T Consensus 36 llGpNGAGKTTli~~l~Gl~~p~s 59 (304)
T PRK13537 36 LLGPNGAGKTTTLKMLLGLTHPDA 59 (304)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999989729999999977956897
No 476
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=92.88 E-value=0.056 Score=32.38 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=18.2
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
++|+-|+|||||++.+.++.
T Consensus 31 LvG~sGsGKSTL~~~l~Gl~ 50 (520)
T TIGR03269 31 ILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EECCCCCHHHHHHHHHHCCC
T ss_conf 99999969999999996514
No 477
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=92.87 E-value=0.05 Score=32.67 Aligned_cols=20 Identities=40% Similarity=0.703 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
.+||||||||||.|.|..-+
T Consensus 74 vvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 74 VVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 63699887468999999998
No 478
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.85 E-value=0.058 Score=32.28 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
.+||-|+|||++.|.+.++++|-+
T Consensus 39 iiGgSGsGKStlLr~I~Gll~P~~ 62 (263)
T COG1127 39 ILGGSGSGKSTLLRLILGLLRPDK 62 (263)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 988988689999999856578988
No 479
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=92.85 E-value=0.052 Score=32.59 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHHHHCC
Q ss_conf 77786059999999887488
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP 21 (186)
.||||.||||+|++++..+-
T Consensus 269 AG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 269 AGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred ECCCCCCHHHHHHHHHHHHH
T ss_conf 56999974689999999998
No 480
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.80 E-value=0.055 Score=32.44 Aligned_cols=87 Identities=26% Similarity=0.348 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCHHHHHH------HHCEEECCCCCCCCCCCCCCCEEEC-CCCCCCHHHCCCCCCC
Q ss_conf 97778605999999988748--8989788532------3000000278887565311120203-7752100110234345
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL--LPLSLEESLE------VSMIYSISGHSSHEYSFIQNRPFRS-PHHSVTIAALIGGGLQ 71 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL--P~l~~~e~le------~~~i~s~~g~~~~~~~~~~~~p~~~-~~~~~~~~~l~gg~~~ 71 (186)
|||-+|+||||+-|.++..| |-++-++.+| +..|.+..|........ .+-... ........--.|||-.
T Consensus 138 LIGlmGaGKSTvGr~LA~~Lg~pFvDlD~~IEk~aG~sI~eIFa~~GE~~FR~~E--~~~L~~ll~~~~~~VIAtGGGiV 215 (304)
T PRK08154 138 LIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLE--RRALERLIAEHEEMVLATGGGIV 215 (304)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHCHHHHHHHH--HHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8899999888999999999598977877999999299999999986889999999--99999987116998997287212
Q ss_pred CCHHHH--HHCCCCEEEEEC
Q ss_conf 682799--827998899803
Q gi|254781026|r 72 VLPGED--SLAHNGVLFLDE 89 (186)
Q Consensus 72 ~~pG~i--~lAh~GVLflDE 89 (186)
..|... -+.|+=|.||+=
T Consensus 216 ~~~~n~~~L~~~g~vVwL~a 235 (304)
T PRK08154 216 SEPATFDLLLSHCYTVWLKA 235 (304)
T ss_pred CCHHHHHHHHHCCEEEEEEC
T ss_conf 78899999996898999979
No 481
>pfam06048 DUF927 Domain of unknown function (DUF927). Family of bacterial proteins of unknown function.
Probab=92.79 E-value=0.14 Score=29.98 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=12.8
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHH
Q ss_conf 79982799889980387859889999999
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQ 103 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~ 103 (186)
..-.||++|+-+.+.=. .+.+.+.|.+
T Consensus 74 ~~~~L~~~Gl~i~s~~~--~~~L~~yl~~ 100 (284)
T pfam06048 74 LRKELADLGLTINSPNA--KKLLAEYLQK 100 (284)
T ss_pred HHHHHHHCCCCCCCHHH--HHHHHHHHHH
T ss_conf 99999976977686068--9999999996
No 482
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=92.76 E-value=0.071 Score=31.79 Aligned_cols=94 Identities=17% Similarity=0.217 Sum_probs=55.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCC---CCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH
Q ss_conf 777860599999998874889897885323000000278887---56531112020377521001102343456827998
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSH---EYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS 78 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~---~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~ 78 (186)
||-+|+|||||++.+. ++.|..-. .+-|-.-. ..+|- -...+....|-.=+..+.-|-=.
T Consensus 436 vG~AGtGKSt~L~aAR---------~AWe~~Gy-~V~GAALsGKAAegLe-------~~sGI~SRTLASle~aW~~G~d~ 498 (888)
T TIGR02768 436 VGRAGTGKSTMLKAAR---------EAWEAAGY-RVIGAALSGKAAEGLE-------AESGIESRTLASLEYAWANGRDL 498 (888)
T ss_pred ECCCCCCHHHHHHHHH---------HHHHHCCC-EEEEHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 7489987667899999---------99987397-7871545558988730-------02687504788799998738752
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf 2799889980387859889999999997195230
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECII 112 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i 112 (186)
|-.+=||.|||.+=-.-.-+.-++...++--..|
T Consensus 499 L~~~dvLviDEAGMV~S~Qm~r~l~~A~~AGaKv 532 (888)
T TIGR02768 499 LEDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKV 532 (888)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 2477668985154414677889999998727605
No 483
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=92.64 E-value=0.058 Score=32.31 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=25.2
Q ss_pred CCCCEEEEECHH--HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 799889980387--859889999999997195230100307898470156752274
Q gi|254781026|r 80 AHNGVLFLDEIP--EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 80 Ah~GVLflDE~~--e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
.+.-+++||=.+ ..+...++.|.+-.+.. -|....||..++-
T Consensus 82 ~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~------------~~~~~~LVl~a~~ 125 (196)
T pfam00448 82 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVI------------APDEVLLVLDATT 125 (196)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHC------------CCCCEEEEEECCC
T ss_conf 6899999989998747677899999998522------------8730289985677
No 484
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=92.62 E-value=0.056 Score=32.39 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 9777860599999998874889897
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL 25 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~ 25 (186)
++|+-|+|||+|+|.+.++++|-+-
T Consensus 315 i~G~nGsGKsTL~k~l~Gl~~p~~G 339 (520)
T TIGR03269 315 IVGTSGAGKTTLSKIIAGVLEPTSG 339 (520)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 9878888789999999488789874
No 485
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.59 E-value=0.059 Score=32.25 Aligned_cols=69 Identities=14% Similarity=0.295 Sum_probs=34.9
Q ss_pred HCCCCEEEEECHH--HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 2799889980387--85988999999999719523010030789847015675227465887889887643899999999
Q gi|254781026|r 79 LAHNGVLFLDEIP--EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEY 156 (186)
Q Consensus 79 lAh~GVLflDE~~--e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y 156 (186)
..+.-++++|-.+ ..+...++.|.+-.+.-. |-..+||...+- |. + ...+.++|
T Consensus 80 ~~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~------------p~~~~LVl~a~~---~~----~-----~~~~~~~f 135 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVK------------PDEVLLVVDAMT---GQ----D-----AVNQAKAF 135 (173)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC------------CCCCEEECCCCC---HH----H-----HHHHHHHH
T ss_conf 568998999788878799999999999986448------------972157424655---06----5-----89999998
Q ss_pred HH--HCCHHHHHCCCEE
Q ss_conf 85--1224321004259
Q gi|254781026|r 157 QA--RISGPLMDRIDIR 171 (186)
Q Consensus 157 ~~--rls~plldR~Dl~ 171 (186)
.. .+++-++.++|-.
T Consensus 136 ~~~~~~~~~I~TKlDet 152 (173)
T cd03115 136 NEALGITGVILTKLDGD 152 (173)
T ss_pred HHCCCCCEEEEEEECCC
T ss_conf 74279978999714389
No 486
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=92.55 E-value=0.061 Score=32.16 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
..||||+|||+|..++...+
T Consensus 54 iTG~pG~GKStli~~l~~~~ 73 (325)
T PRK09435 54 ITGVPGVGKSTFIEALGMHL 73 (325)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 42799986889999999999
No 487
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=92.54 E-value=0.056 Score=32.38 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++||.|+||||+++-+..+..|-
T Consensus 354 iVG~SGsGKSTL~~LL~r~y~p~ 376 (547)
T PRK10522 354 LIGGNGSGKSTLAMLLTGLYQPQ 376 (547)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98999997799999982896699
No 488
>COG0645 Predicted kinase [General function prediction only]
Probab=92.51 E-value=0.13 Score=30.23 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
+.|=||+|||++|+.+++.|+.+
T Consensus 6 ~~Gl~GsGKstlA~~l~~~lgA~ 28 (170)
T COG0645 6 VGGLPGSGKSTLARGLAELLGAI 28 (170)
T ss_pred EECCCCCCHHHHHHHHHHHCCCE
T ss_conf 72588865868878988534866
No 489
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=92.50 E-value=0.062 Score=32.14 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+|||||++.|.++.+|-
T Consensus 35 lvG~nGaGKSTL~~~l~G~~~p~ 57 (501)
T PRK11288 35 LMGENGAGKSTLLKILSGNYQPD 57 (501)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98999981999999984799997
No 490
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.48 E-value=0.067 Score=31.93 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
..||||+|||+|..++...+
T Consensus 4 itG~pGaGKStLi~~l~~~~ 23 (148)
T cd03114 4 ITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 25899787899999999999
No 491
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.45 E-value=0.062 Score=32.13 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
|+|.-|+||||++|.+..|.+|-+
T Consensus 44 lVGESG~GKSTlgr~i~~L~~pt~ 67 (268)
T COG4608 44 LVGESGCGKSTLGRLILGLEEPTS 67 (268)
T ss_pred EEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 993688877879999972838887
No 492
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.43 E-value=0.06 Score=32.22 Aligned_cols=19 Identities=37% Similarity=0.663 Sum_probs=17.7
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9777860599999998874
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSI 19 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~i 19 (186)
++||-|+|||||++.+.++
T Consensus 32 iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 32 IMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999998377
No 493
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=92.41 E-value=0.059 Score=32.25 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
|+|-||+||||+|+.+..-|
T Consensus 7 ~TGLsGsGKTTlA~~l~~~L 26 (157)
T pfam01583 7 FTGLSGSGKSTIANALERKL 26 (157)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 88989999999999999999
No 494
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.38 E-value=0.059 Score=32.26 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
|.|-||+|||++|+.|...+.
T Consensus 4 l~GlP~SGKSt~a~~L~~~l~ 24 (249)
T TIGR03574 4 LTGLPGVGKSTFSKELSKKLS 24 (249)
T ss_pred EECCCCCCHHHHHHHHHHHHH
T ss_conf 967899989999999999999
No 495
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=92.29 E-value=0.078 Score=31.53 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
++|+-|+|||||++.+.+++|+.
T Consensus 293 i~G~nGsGKsTLl~~L~Gl~~~~ 315 (513)
T PRK13549 293 IAGLVGAGRTELVQCLFGAYPGR 315 (513)
T ss_pred EECCCCCCHHHHHHHHHCCCCCC
T ss_conf 74798865899999983898889
No 496
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=92.25 E-value=0.07 Score=31.80 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 97778605999999988748
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSIL 20 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iL 20 (186)
++|.-|||||++|..++.-|
T Consensus 3 lmGvaG~GKs~~a~~l~~~l 22 (175)
T TIGR01313 3 LMGVAGSGKSTIASALAHRL 22 (175)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 76027862889999999985
No 497
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=92.24 E-value=0.076 Score=31.60 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 977786059999999887488
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILL 21 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP 21 (186)
|.||-|+|||||+--+-+|--
T Consensus 36 ltGPSGSGKTTLLtLiG~LR~ 56 (220)
T TIGR02982 36 LTGPSGSGKTTLLTLIGGLRS 56 (220)
T ss_pred EECCCCCCHHHHHHHHHHHCC
T ss_conf 437889846889998876256
No 498
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.15 E-value=0.12 Score=30.54 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCC---CCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH
Q ss_conf 977786059999999887488989788532300000027888756---53111202037752100110234345682799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEY---SFIQNRPFRSPHHSVTIAALIGGGLQVLPGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~---~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i 77 (186)
.+|..|+|||+++...... .|... |.+-|....+. .+-...-+ .+.|.++. ......|..
T Consensus 402 VvG~AGaGKStmL~aARea---------wEa~G-yrV~GaALsGkAAegLe~~sGI----~SrTlAs~---e~~w~~gr~ 464 (1102)
T PRK13826 402 VIGRAGAGKTTMMKAAREA---------WEAAG-YRVVGGALAGKAAEGLEKEAGI----ASRTLSSW---ELRWNQGRD 464 (1102)
T ss_pred EEECCCCCHHHHHHHHHHH---------HHHCC-CEEEEECCCHHHHHHHHHCCCC----CCHHHHHH---HHHHCCCCC
T ss_conf 9842888788999999999---------99779-7798015007899977534695----30338999---987435865
Q ss_pred HHCCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 8279988998038785988999999999719
Q gi|254781026|r 78 SLAHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 78 ~lAh~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
.+-.+-||+|||..-.....+.-++...|+-
T Consensus 465 ~L~~~dVlVIDEAGMVgsrqmarvl~~ae~a 495 (1102)
T PRK13826 465 QLDNKTVFVLDEAGMVSSRQMALFVEAVTRA 495 (1102)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 5678738998455565579999999999975
No 499
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.13 E-value=0.071 Score=31.79 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
++||-|||||++..-++++++|-.
T Consensus 36 ~lGpSGcGKTTLLnl~AGf~~P~~ 59 (259)
T COG4525 36 VLGPSGCGKTTLLNLIAGFVTPSR 59 (259)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 976888657889999862758566
No 500
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=92.13 E-value=0.085 Score=31.32 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97778605999999988748898
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL 23 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l 23 (186)
|+||-|.|||||.|-|-..+.|-
T Consensus 33 LtG~SGAGKttLLKLl~~~~~P~ 55 (215)
T TIGR02673 33 LTGPSGAGKTTLLKLLYGALTPS 55 (215)
T ss_pred EECCCCCCHHHHHHHHHHHCCCC
T ss_conf 87277861789999998526987
Done!