RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781026|ref|YP_003065439.1| hypothetical protein
CLIBASIA_04640 [Candidatus Liberibacter asiaticus str. psy62]
(186 letters)
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain.
Length = 499
Score = 212 bits (540), Expect = 7e-56
Identities = 91/175 (52%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
+ GPPG+ K+MLAS L IL PL+ EE++E + I+S+ G + I+ RPFRSPHHS
Sbjct: 216 LFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLI-DRKQIKQRPFRSPHHSA 274
Query: 61 TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120
+ AL+GGG LPGE SLAHNGVLFLDE+PEF L+ALR+P+E G I+RA+ KI
Sbjct: 275 SKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF 334
Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175
YP+R QL+AAMNPC CG C P+ + Y ++SGP +DRID+ + VP
Sbjct: 335 YPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVP 389
>gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional.
Length = 506
Score = 176 bits (447), Expect = 3e-45
Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 3/175 (1%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV 60
+IGPPG K+MLAS + +L LS EE+LE + I S+ S + + + RPFRSPHHS
Sbjct: 215 LIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQW-RQRPFRSPHHSA 273
Query: 61 TIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS 120
++ A++GGG PGE SLAHNGVLFLDE+PEF +TL+ALR+P+E+G+ ++R KI+
Sbjct: 274 SLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT 333
Query: 121 YPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVP 175
YP+R QL+AAMNP G + N C P Y R+SGP +DR D+ + +P
Sbjct: 334 YPARFQLVAAMNPSPTGHYQGNHNRCT--PEQTLRYLNRLSGPFLDRFDLSLEIP 386
>gnl|CDD|162667 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea.
Length = 589
Score = 46.7 bits (111), Expect = 4e-06
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 51 RPFRSPHHSVTIAALIGG---------GLQVL-PGEDSLAHNGVLFLDEIPEFSPQTLNA 100
PF VT LIGG G +V PG A GVL++D N
Sbjct: 44 MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNR 103
Query: 101 LRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
L Q L+ G I+ R + +P++ LIA +P
Sbjct: 104 LLQALDEGVVIVEREGISVVHPAKFALIATYDP 136
>gnl|CDD|162859 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit. A number of
genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 44.7 bits (106), Expect = 2e-05
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 59 SVTIAALIGGGLQVL-PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR 117
S+ I + G + PG + AH G+L++DE+ ++ L G + R
Sbjct: 103 SLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGL 162
Query: 118 KISYPSRIQLIAAMNP 133
+S+P+R LI MNP
Sbjct: 163 SVSHPARFVLIGTMNP 178
>gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB. Members of
this protein are LonB, a paralog of the ATP-dependent
protease La (LonA, TIGR00763). LonB proteins are found
strictly, and almost universally, in endospore-forming
bacteria. This protease was shown, in Bacillus subtilis,
to be expressed specifically in the forespore, during
sporulation, under control of sigma(F). The lonB gene,
despite location immediately upstream of lonA, was shown
to be monocistronic. LonB appears able to act on
sigma(H) for post-translation control, but lonB mutation
did not produce an obvious sporulation defect under the
conditions tested. Note that additional paralogs of LonA
and LonB occur in the Clostridium lineage and this model
selects only one per species as the protein that
corresponds to LonB in B. subtilis.
Length = 531
Score = 37.1 bits (86), Expect = 0.002
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 66 IGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLE 106
I G Q PG + AH GVLF+DEI E P +N L + LE
Sbjct: 160 IAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLE 200
>gnl|CDD|183114 PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR;
Provisional.
Length = 638
Score = 37.4 bits (87), Expect = 0.003
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
LAH G LFL+++ SP+ +AL Q L+TG +I R + + P +++IA
Sbjct: 414 LAHGGTLFLEKVEYLSPELQSALLQVLKTG--VITRLDSRRLIPVDVRVIATTT 465
>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 139
Score = 35.8 bits (83), Expect = 0.008
Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 29/141 (20%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYS-FIQNRPFRSPHHS 59
++GPPG KS LA L + L + + R
Sbjct: 4 LVGPPGTGKSELAERLAAALSNRPVFY---------VQLTRDTTEEDLKGRR-------- 46
Query: 60 VTIAALIGGGLQVLPGE--DSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANR 117
+ G + G + + LDEI +P LN+L L+ ++
Sbjct: 47 ----NIANGTTSWVDGPLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGE 102
Query: 118 KISYP-----SRIQLIAAMNP 133
+ R +LIA MNP
Sbjct: 103 LVKVAPDDFAKRFRLIATMNP 123
>gnl|CDD|184312 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.
Length = 637
Score = 33.4 bits (77), Expect = 0.031
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIY 35
MIG PG KSMLA + + LLP +E L+ ++Y
Sbjct: 55 MIGSPGTGKSMLAKAM-AELLP---KEELQDILVY 85
Score = 29.6 bits (67), Expect = 0.54
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 68 GGLQ------VLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109
GGL+ V G AH GVLF+DEI ++ +L ++ +
Sbjct: 207 GGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKK 254
>gnl|CDD|162544 TIGR01817, nifA, Nif-specific regulatory protein. This model
represents NifA, a DNA-binding regulatory protein for
nitrogen fixation. The model produces scores between the
trusted and noise cutoffs for a well-described NifA
homolog in Aquifex aeolicus (which lacks nitrogenase),
for transcriptional activators of alternative
nitrogenases (VFe or FeFe instead of MoFe), and
truncated forms.
Length = 534
Score = 33.5 bits (77), Expect = 0.037
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
LA G LFLDEI E SP L + L+ GE NR + R L+AA N
Sbjct: 288 LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVR--LVAATN 339
>gnl|CDD|163066 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC.
Length = 615
Score = 32.5 bits (74), Expect = 0.059
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 80 AHNGVLFLDEIPEFSPQTLNALRQPLE 106
AH GVLF+DEI E P N L + LE
Sbjct: 264 AHGGVLFIDEIGELDPLLQNKLLKVLE 290
>gnl|CDD|184036 PRK13407, bchI, magnesium chelatase subunit I; Provisional.
Length = 334
Score = 32.1 bits (73), Expect = 0.088
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
PG + A+ G L++DE+ ++ L ++GE ++ R I +P+R L+ + NP
Sbjct: 121 PGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP 180
>gnl|CDD|131085 TIGR02030, BchI-ChlI, magnesium chelatase ATPase subunit I. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria.
Length = 337
Score = 31.4 bits (71), Expect = 0.15
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
PG + A+ G+L++DE+ ++ L +G ++ R I +P+R L+ + NP
Sbjct: 124 PGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP 183
>gnl|CDD|179916 PRK05022, PRK05022, anaerobic nitric oxide reductase transcription
regulator; Provisional.
Length = 509
Score = 30.9 bits (71), Expect = 0.19
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 74 PGEDSLAHNGVLFLDEIPEFS 94
G+ LA G LFLDEI E
Sbjct: 274 SGKFELADGGTLFLDEIGELP 294
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 30.8 bits (69), Expect = 0.22
Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 16/134 (11%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIY-SISGHSSHEYSFIQNRPFRSPHHS 59
++GPPG+ K+ LA L L P +IY + S
Sbjct: 7 IVGPPGSGKTTLARALARELGPPG------GGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 60 VTIAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKI 119
+ + L + VL LDEI AL L R +
Sbjct: 61 GSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLL-----EELRLLLLL 111
Query: 120 SYPSRIQLIAAMNP 133
+ +I N
Sbjct: 112 KSEKNLTVILTTND 125
>gnl|CDD|163070 TIGR02915, PEP_resp_reg, putative PEP-CTERM system response
regulator. Members of this protein family share
full-length homology with (but do not include) the
acetoacetate metabolism regulatory protein AtoC. These
proteins have a Fis family DNA binding sequence
(pfam02954), a response regulator receiver domain
(pfam00072), and sigma-54 interaction domain
(pfam00158).
Length = 445
Score = 30.5 bits (69), Expect = 0.28
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 68 GGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNA-LRQPLETGECIIARANRKISYPSRIQ 126
G ++ G+ AH G LFLDEI + P L A L + L+ E +I R + P ++
Sbjct: 220 GAVKQTLGKIEYAHGGTLFLDEIGDL-PLNLQAKLLRFLQ--ERVIERLGGREEIPVDVR 276
Query: 127 LIAAMN 132
++ A N
Sbjct: 277 IVCATN 282
>gnl|CDD|183157 PRK11479, PRK11479, hypothetical protein; Provisional.
Length = 274
Score = 30.2 bits (68), Expect = 0.29
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 62 IAALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALR 102
+A G G+Q++ + ++ H+ LF +P+ +PQ +
Sbjct: 103 VAEATGAGVQIVSLKKAIKHSDKLFALRVPDLTPQQATKIT 143
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 29.9 bits (68), Expect = 0.43
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSM 33
+ GPPGA KS LA L ++L +++V M
Sbjct: 38 IAGPPGAGKSTLAEFLEALLQQDGELPAIQVPM 70
>gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein
AtoC; Provisional.
Length = 457
Score = 28.3 bits (63), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132
A+ G L LDEI E L + L+ E R + I++IAA N
Sbjct: 236 ANEGTLLLDEIGEMPLVLQAKLLRILQERE--FERIGGHQTIKVDIRIIAATN 286
>gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR;
Provisional.
Length = 441
Score = 28.1 bits (62), Expect = 1.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130
A G LFLDEI + SP L + ++ E +N+ IS R LIAA
Sbjct: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR--LIAA 280
>gnl|CDD|181710 PRK09225, PRK09225, threonine synthase; Validated.
Length = 462
Score = 27.4 bits (62), Expect = 2.1
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Query: 54 RSPHHSVTIA-ALIGGGLQVLPGEDSLAHNGVLFL-DEIPEFSPQTLNALR 102
R V+ + A++ G LA +G L++ +E+P+ S + ++AL
Sbjct: 7 RGNAPQVSFSEAVLQG----------LAPDGGLYVPEELPKLSAEEIDALL 47
>gnl|CDD|185322 PRK15424, PRK15424, propionate catabolism operon regulatory protein
PrpR; Provisional.
Length = 538
Score = 27.0 bits (60), Expect = 2.7
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 80 AHNGVLFLDEIPE 92
AH G LFLDEI E
Sbjct: 321 AHGGTLFLDEIGE 333
>gnl|CDD|162808 TIGR02329, propionate_PrpR, propionate catabolism operon regulatory
protein PrpR. At least five distinct pathways exists
for the catabolism of propionate by way of
propionyl-CoA. Members of this family represent the
transcriptional regulatory protein PrpR, whose gene is
found in most cases divergently transcribed from an
operon for the methylcitric acid cycle of propionate
catabolism. 2-methylcitric acid, a catabolite by this
pathway, is a coactivator of PrpR.
Length = 526
Score = 26.4 bits (58), Expect = 4.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAA 130
AH G LFLDEI E L + LE E + + P ++++AA
Sbjct: 306 AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPV--PVDVRVVAA 354
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 26.1 bits (58), Expect = 5.1
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYS 46
+IGP G KS L C +L P S L IS SS + +
Sbjct: 33 LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK---PISMLSSRQLA 75
>gnl|CDD|128644 smart00350, MCM, minichromosome maintenance proteins.
Length = 509
Score = 26.1 bits (58), Expect = 5.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
LA NGV +DE + A+ + +E IA+A + +R ++AA NP
Sbjct: 298 LADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANP 352
>gnl|CDD|162029 TIGR00764, lon_rel, lon-related putative ATP-dependent protease.
Members of this family from Pyrococcus horikoshii and
Pyrococcus abyssi each contain a predicted intein.
Length = 608
Score = 26.0 bits (57), Expect = 5.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 70 LQVLPGEDSLAHNGVLFLDEI 90
+V G AH GVL++DEI
Sbjct: 206 ERVEAGAIHRAHKGVLYIDEI 226
Score = 25.2 bits (55), Expect = 9.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1 MIGPPGARKSMLASCLPSILLPLSLEESL 29
+IG PG KSMLA + +L LE+ L
Sbjct: 42 LIGEPGVGKSMLAKAMAELLPDEELEDIL 70
>gnl|CDD|177314 PHA01747, PHA01747, putative ATP-dependent protease.
Length = 425
Score = 25.9 bits (57), Expect = 5.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 82 NGVLFLDEIPEFSPQTLNALRQPLETG--ECIIARA----NRKISYPSRIQLIAAMNP 133
NG++F DEI + + A+ L TG C+ R + + I +I A NP
Sbjct: 244 NGLIF-DEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNP 300
>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
Length = 1092
Score = 25.8 bits (57), Expect = 6.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 151 RCATEYQARISGPLMDRIDIRIAVPSRT-HIRSFCN 185
R E + + G +++ RI V HIR+ N
Sbjct: 467 RVEKEIRDALQGRSPFKLEFRIVVKDGVRHIRALAN 502
>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4;
Provisional.
Length = 915
Score = 25.7 bits (56), Expect = 6.9
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133
PG LA+ GV +DE+ + ++ +L + +E IA+A + + ++A+ NP
Sbjct: 550 PGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNP 609
>gnl|CDD|185413 PTZ00047, PTZ00047, cytochrome c oxidase subunit II; Provisional.
Length = 162
Score = 25.6 bits (56), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 163 PLMDR---IDIRIAVPSRTHIR 181
P M R +D R+ +P+RTHIR
Sbjct: 63 PGMLRQLEVDKRLTLPTRTHIR 84
>gnl|CDD|184703 PRK14485, PRK14485, putative bifunctional cbb3-type cytochrome c
oxidase subunit I/II; Provisional.
Length = 712
Score = 25.8 bits (57), Expect = 7.8
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 25 LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLP 74
L E+ ++ +Y + +++ +P + + TIA LIGG ++++P
Sbjct: 468 LAEAAPLTKVYHPRASGEKWHRWLERKPIQLTVLT-TIAILIGGMVEIIP 516
>gnl|CDD|177984 PLN02350, PLN02350, phosphogluconate dehydrogenase
(decarboxylating).
Length = 493
Score = 25.4 bits (56), Expect = 8.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 96 QTLNALRQPLETGECIIARAN 116
QT+ AL + +E G+CII N
Sbjct: 88 QTIKALSEYMEPGDCIIDGGN 108
>gnl|CDD|184978 PRK15017, PRK15017, cytochrome o ubiquinol oxidase subunit I;
Provisional.
Length = 663
Score = 25.7 bits (56), Expect = 8.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 52 PFRSPHHSVTIAALIGGGLQVL 73
PF P VTIAA+I GGL ++
Sbjct: 11 PFHEPIVMVTIAAIILGGLALV 32
>gnl|CDD|182758 PRK10820, PRK10820, DNA-binding transcriptional regulator TyrR;
Provisional.
Length = 520
Score = 25.4 bits (56), Expect = 8.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 80 AHNGVLFLDEIPEFSPQ 96
A+ G + LDEI E SP+
Sbjct: 297 ANGGSVLLDEIGEMSPR 313
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 25.5 bits (56), Expect = 8.9
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 52 PFRSPHHSVTIA--ALIGGGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109
PFR HH V +A I G E+ L L+++ EFS + + Q L
Sbjct: 380 PFREAHHIVGVAVVGAIAKG---CALEE-------LSLEQLKEFSDVIEDDVYQILTIES 429
Query: 110 CIIAR 114
C+ R
Sbjct: 430 CLEKR 434
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,026,247
Number of extensions: 181138
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 43
Length of query: 186
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,092,969
Effective search space: 401110962
Effective search space used: 401110962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.4 bits)