HHsearch alignment for GI: 254781027 and conserved domain: TIGR00416
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=97.76 E-value=1.4e-05 Score=48.82 Aligned_cols=56 Identities=14% Similarity=0.320 Sum_probs=44.7
Q ss_pred CCEEEEEEECCCCCHHHH-------HHHHHCC-CEEEEEHHHHHHHHHHCCCCEEEECCCHHHHH
Q ss_conf 566899850357753799-------9872039-86998365504556312881075107499999
Q gi|254781027|r 13 SHYLAVGEINLDGSLPAA-------ICAKNMN-KDFICPQSCGSEAAWASDSLRIVAPSTLLELI 69 (108)
Q Consensus 13 ~~~~~iGELsLdG~Lp~a-------l~a~~~~-~~~iiP~~N~~Ea~lv~~~~~v~~~~~L~evv 69 (108)
T Consensus 418 ~~~~~lGEVGL~G~ir~vp~~~~R~kEaak~GFkraIvP~~~~~~W~~~-~gi~~~~v~~v~~al 481 (481)
T TIGR00416 418 PDLVILGEVGLAGEIRPVPSLEERLKEAAKLGFKRAIVPKANLPKWTAP-EGIKVIGVKKVADAL 481 (481)
T ss_pred CCEEEEEEECCCCEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCC-CCCEEEEHHHHHHHC
T ss_conf 5638887643777040077631679999846863442147888875244-562476034465409