HHsearch alignment for GI: 254781027 and conserved domain: pfam05362

>pfam05362 Lon_C Lon protease (S16) C-terminal proteolytic domain. The Lon serine proteases must hydrolyse ATP to degrade protein substrates. In Escherichia coli, these proteases are involved in turnover of intracellular proteins, including abnormal proteins following heat-shock. The active site for protease activity resides in a C-terminal domain. The Lon proteases are classified as family S16 in Merops.
Probab=98.18  E-value=2.3e-06  Score=52.76  Aligned_cols=61  Identities=25%  Similarity=0.382  Sum_probs=49.5

Q ss_pred             HCCEEEEEEECCCCC-HHH------HHHHHHCC-CEEEEEHHHHHHHHH----HCCCCEEEECCCHHHHHHHH
Q ss_conf             356689985035775-379------99872039-869983655045563----12881075107499999997
Q gi|254781027|r   12 FSHYLAVGEINLDGS-LPA------AICAKNMN-KDFICPQSCGSEAAW----ASDSLRIVAPSTLLELINHL   72 (108)
Q Consensus        12 l~~~~~iGELsLdG~-Lp~------al~a~~~~-~~~iiP~~N~~Ea~l----v~~~~~v~~~~~L~evv~~l   72 (108)
T Consensus       130 ~~~iAmTGEIsL~G~VlpIGGv~eKi~aA~raGik~ViiP~~N~~dl~~ip~~i~~~i~i~~V~~i~evl~~a  202 (205)
T pfam05362       130 RKDVAMTGEITLRGRVLPIGGLKEKLLAAHRAGIKTVIIPKENEKDLEEIPENVREGLEIIPVEHVDEVLKHA  202 (205)
T ss_pred             CCCEEEEECCEEEEEEEEECCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf             7887996033135679984899999999999399889974777667998349997699999969399999997