Query gi|254781027|ref|YP_003065440.1| hypothetical protein CLIBASIA_04645 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs 107 out of 854
Neff 6.7
Searched_HMMs 33803
Date Wed Jun 1 20:49:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781027.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1z0w_A Putative protease LA h 99.3 1.9E-12 5.6E-17 83.2 4.1 82 12-102 114-206 (207)
2 >1rre_A ATP-dependent protease 99.1 1.7E-10 5E-15 73.4 6.6 72 12-83 114-197 (200)
3 >1xhk_A Putative protease LA h 99.0 5.2E-10 1.5E-14 70.9 6.9 63 12-75 116-186 (187)
4 >2hi0_A Putative phosphoglycol 25.3 54 0.0016 15.1 3.1 48 27-75 104-152 (152)
5 >1em8_B DNA polymerase III PSI 22.1 17 0.00049 17.7 -0.6 19 90-108 78-96 (112)
6 >2ah5_A COG0546: predicted pho 18.8 64 0.0019 14.7 1.8 46 27-73 79-125 (125)
7 >2jv7_A CBP, calcium-binding p 17.2 32 0.00096 16.3 0.0 18 17-34 47-64 (78)
8 >1bf6_A Phosphotriesterase hom 15.1 94 0.0028 13.9 3.7 66 14-79 30-118 (145)
9 >1vjr_A 4-nitrophenylphosphata 15.0 95 0.0028 13.9 2.9 44 30-73 100-145 (145)
10 >3e2v_A 3'-5'-exonuclease; str 14.7 76 0.0022 14.4 1.4 12 13-24 154-165 (401)
No 1
>>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A (A:)
Probab=99.29 E-value=1.9e-12 Score=83.24 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=68.2
Q ss_pred HCCEEEEEEECCCCCH-------HHHHHHHHCC-CEEEEEHHHHHHHHHH---CCCCEEEECCCHHHHHHHHCCCCCCCC
Q ss_conf 3566899850357753-------7999872039-8699836550455631---288107510749999999709864676
Q gi|254781027|r 12 FSHYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAWA---SDSLRIVAPSTLLELINHLNNKQLLPQ 80 (108)
Q Consensus 12 l~~~~~iGELsLdG~L-------p~al~a~~~~-~~~iiP~~N~~Ea~lv---~~~~~v~~~~~L~evv~~l~g~~~~~~ 80 (108)
-.++.|.|||+|||++ +.+.+|++.| +.+|||.+|..|+.+. .+++++++++||.|+++++.+....++
T Consensus 114 ~~~~~~tGel~l~G~V~~V~gi~~ki~aA~~~G~k~vivP~~n~~~~~l~~~~~~gi~i~~v~~l~ea~~~~~~~~~~~~ 193 (207)
T 1z0w_A 114 DQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVLEDGKKKN 193 (207)
T ss_dssp ETTEEECCEECTTSBEECCSCHHHHHHHHHHTTCSEEEEEGGGGGGCCCCTTTTTSSEEEEESBHHHHHHHHBCCSHHHH
T ss_pred CHHEEEHHHHCCCHHHCCHHHHHHHHHHHHHCCCCEEECCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCH
T ss_conf 00111012316513322001088999999976983797166665533546011698499996959999999812675311
Q ss_pred CCCCCCCCCCCCCCHHHHCCHH
Q ss_conf 7754446765699876715846
Q gi|254781027|r 81 PCKSTYKKRDNLPNFAEIKGQK 102 (108)
Q Consensus 81 ~~~~~~~~~~~~~Df~dV~GQ~ 102 (108)
. ...||.||+||.
T Consensus 194 ~---------~~~~~~~~~~q~ 206 (207)
T 1z0w_A 194 R---------LMSKFKELELAA 206 (207)
T ss_dssp H---------HHHHHHHHHHHH
T ss_pred H---------HHHHHHHCCCCC
T ss_conf 5---------677665233246
No 2
>>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} (A:)
Probab=99.10 E-value=1.7e-10 Score=73.38 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=60.6
Q ss_pred HCCEEEEEEECCCCCH-------HHHHHHHHCC-CEEEEEHHHHHHHHHHC----CCCEEEECCCHHHHHHHHCCCCCCC
Q ss_conf 3566899850357753-------7999872039-86998365504556312----8810751074999999970986467
Q gi|254781027|r 12 FSHYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAWAS----DSLRIVAPSTLLELINHLNNKQLLP 79 (108)
Q Consensus 12 l~~~~~iGELsLdG~L-------p~al~a~~~~-~~~iiP~~N~~Ea~lv~----~~~~v~~~~~L~evv~~l~g~~~~~ 79 (108)
-.++.|.|||+|||++ ..+.+|++.| +.+|+|.+|..|+..+. ++++|++++||.|+++++.+....+
T Consensus 114 ~~~ia~tGei~l~G~V~pVggi~~ki~~A~~~G~k~~ivP~~n~~e~~~~~~~~~~~l~v~~v~~l~eai~~~~~~~~~~ 193 (200)
T 1rre_A 114 RADVAXTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSG 193 (200)
T ss_dssp CTTEEECCEECTTCBEECCSCHHHHHHHHHHTTCCEEEEEGGGGGGGGGSCHHHHHHSEEEEESBHHHHHHHHBSSCC--
T ss_pred CCCEEEEECCCCHHHHCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCC
T ss_conf 75704761234125431379878999999984991999657887668862488757969999695999999996279987
Q ss_pred CCCC
Q ss_conf 6775
Q gi|254781027|r 80 QPCK 83 (108)
Q Consensus 80 ~~~~ 83 (108)
.+.+
T Consensus 194 ~~~~ 197 (200)
T 1rre_A 194 XQVV 197 (200)
T ss_dssp ----
T ss_pred CCCC
T ss_conf 7646
No 3
>>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} (A:)
Probab=99.04 E-value=5.2e-10 Score=70.88 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=56.6
Q ss_pred HCCEEEEEEECCCCCH-------HHHHHHHHCC-CEEEEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCC
Q ss_conf 3566899850357753-------7999872039-86998365504556312881075107499999997098
Q gi|254781027|r 12 FSHYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAWASDSLRIVAPSTLLELINHLNNK 75 (108)
Q Consensus 12 l~~~~~iGELsLdG~L-------p~al~a~~~~-~~~iiP~~N~~Ea~lv~~~~~v~~~~~L~evv~~l~g~ 75 (108)
-.++.|.|||+|||++ +.+.+|++.| +.+|+|.+|..|+... ++++|++++||.|+++++.|.
T Consensus 116 ~~~~a~tGel~l~G~V~~vggi~~ki~~A~~~G~k~~ivP~~n~~~~~~~-~~i~i~~V~~l~eal~~~~g~ 186 (187)
T 1xhk_A 116 KQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEANXIDVIET-EGIEIIPVKTLDEIVPLVFDL 186 (187)
T ss_dssp CSSEEECCEECTTCBEECCSCHHHHHHHHHHTTCSEEEEEGGGGGGCCCC-CSSEEEEESBHHHHHHHHBCC
T ss_pred CCEEEEEECCCCCHHHHHCCCHHHHHHHHHHCCCCEEEECHHHHHHCCCC-CCCEEEEECCHHHHHHHHHCC
T ss_conf 21068871245534556335879999999982999999886676650656-996999928099999998668
No 4
>>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:1-18,A:107-240)
Probab=25.29 E-value=54 Score=15.10 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=30.8
Q ss_pred HHHHHHHHHCC-CEEEEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCC
Q ss_conf 37999872039-86998365504556312881075107499999997098
Q gi|254781027|r 27 LPAAICAKNMN-KDFICPQSCGSEAAWASDSLRIVAPSTLLELINHLNNK 75 (108)
Q Consensus 27 Lp~al~a~~~~-~~~iiP~~N~~Ea~lv~~~~~v~~~~~L~evv~~l~g~ 75 (108)
..=+.+|++.| +.+.|..+......+.... .-+-+.|+.|+.+++.|+
T Consensus 104 ~~Di~aA~~aG~~~i~v~~g~~~~~~l~~~~-pd~ii~s~~el~~~l~~e 152 (152)
T 2hi0_A 104 EIDIQTARNSEXDEIAVNWGFRSVPFLQKHG-ATVIVDTAEKLEEAILGE 152 (152)
T ss_dssp HHHHHHHHHTTCEEEEESSSSSCHHHHHHTT-CCCEECSHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHCC-CCEEECCHHHHHHHHCCC
T ss_conf 7789999986994999888989878897689-999989999999985699
No 5
>>1em8_B DNA polymerase III PSI subunit; DNA POL III, heterodimer, clamp-loader, alpha-beta fold, gene regulation; HET: DNA; 2.10A {Escherichia coli} (B:)
Probab=22.08 E-value=17 Score=17.70 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.6
Q ss_pred CCCCCHHHHCCHHHHHCCC
Q ss_conf 5699876715846630029
Q gi|254781027|r 90 DNLPNFAEIKGQKTIKRAL 108 (108)
Q Consensus 90 ~~~~Df~dV~GQ~~aKRAL 108 (108)
-..+.++++++-..|||||
T Consensus 78 l~Sp~L~~L~~n~~aKRaL 96 (112)
T 1em8_B 78 VASPALTDLRANPTARAAL 96 (112)
T ss_dssp EEECCHHHHHHCHHHHHHH
T ss_pred EECCCHHHHHCCHHHHHHH
T ss_conf 8281899883597999999
No 6
>>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrolase, haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae TIGR4} (A:1-13,A:99-210)
Probab=18.85 E-value=64 Score=14.74 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=29.9
Q ss_pred HHHHHHHHHCC-CEEEEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHC
Q ss_conf 37999872039-869983655045563128810751074999999970
Q gi|254781027|r 27 LPAAICAKNMN-KDFICPQSCGSEAAWASDSLRIVAPSTLLELINHLN 73 (108)
Q Consensus 27 Lp~al~a~~~~-~~~iiP~~N~~Ea~lv~~~~~v~~~~~L~evv~~l~ 73 (108)
..-+.+|++.| +.+.+.........+-. ...-+-+++|.|+.++|+
T Consensus 79 ~~Di~~A~~aGi~~i~v~~~~~~~~~l~~-~~~d~~i~~l~eL~~~l~ 125 (125)
T 2ah5_A 79 KFDXLGARETGIQKLAITWGFGEQADLLN-YQPDYIAHKPLEVLAYFQ 125 (125)
T ss_dssp HHHHHHHHHHTCEEEEESSSSSCHHHHHT-TCCSEEESSTTHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHH-CCCCEEECCHHHHHHHHC
T ss_conf 88999999859929998588898788976-799999899999999859
No 7
>>2jv7_A CBP, calcium-binding protein; virulence factor, homodimer, all alpha helical, glycoprotein, secreted, metal binding protein; NMR {Ajellomyces capsulatus} (A:)
Probab=17.23 E-value=32 Score=16.25 Aligned_cols=18 Identities=50% Similarity=0.582 Sum_probs=13.3
Q ss_pred EEEEECCCCCHHHHHHHH
Q ss_conf 998503577537999872
Q gi|254781027|r 17 AVGEINLDGSLPAAICAK 34 (108)
Q Consensus 17 ~iGELsLdG~Lp~al~a~ 34 (108)
.+||||||=.+|++..+.
T Consensus 47 algelgl~~p~~~~~~~t 64 (78)
T 2jv7_A 47 AVGELGLDVPLDLACAAT 64 (78)
T ss_dssp HHHSSSSTTTTHHHHHHT
T ss_pred HHHHHCCCCCCHHHHHHH
T ss_conf 998716799732888871
No 8
>>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} (A:89-233)
Probab=15.09 E-value=94 Score=13.89 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=33.0
Q ss_pred CEEEEEEECCCCC---------HHH-HHHHHHCCCEEEE--EHHHHHH-H-HHHC----CCCE--EE---ECCCHHHHHH
Q ss_conf 6689985035775---------379-9987203986998--3655045-5-6312----8810--75---1074999999
Q gi|254781027|r 14 HYLAVGEINLDGS---------LPA-AICAKNMNKDFIC--PQSCGSE-A-AWAS----DSLR--IV---APSTLLELIN 70 (108)
Q Consensus 14 ~~~~iGELsLdG~---------Lp~-al~a~~~~~~~ii--P~~N~~E-a-~lv~----~~~~--v~---~~~~L~evv~ 70 (108)
...+|||.|||.. +.+ +-.|.+.++.+++ +..++.+ . .++. +.-. ++ .-.+...+..
T Consensus 30 ~~~~IGEiGlD~~~~~~~Q~~~f~a~l~la~~~~~pv~iH~r~~~~~~~~~~il~~~~~~~~~~~~~hh~f~g~~~~~~~ 109 (145)
T 1bf6_A 30 KAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILK 109 (145)
T ss_dssp CEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSHHHHHHHHHHTTCCGGGEEECCCCSSCCHHHHHH
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 03342101332577888899999999999999799589814541021688999999843445522124578899999999
Q ss_pred HHCCCCCCC
Q ss_conf 970986467
Q gi|254781027|r 71 HLNNKQLLP 79 (108)
Q Consensus 71 ~l~g~~~~~ 79 (108)
++.....++
T Consensus 110 ~~~~G~~~s 118 (145)
T 1bf6_A 110 MIDLGAYVQ 118 (145)
T ss_dssp HHHTTCEEE
T ss_pred HHHCCCEEE
T ss_conf 986791899
No 9
>>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271)
Probab=14.97 E-value=95 Score=13.88 Aligned_cols=44 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHCC-CEEEEEHHHHHHHHHHCCCCE-EEECCCHHHHHHHHC
Q ss_conf 99872039-869983655045563128810-751074999999970
Q gi|254781027|r 30 AICAKNMN-KDFICPQSCGSEAAWASDSLR-IVAPSTLLELINHLN 73 (108)
Q Consensus 30 al~a~~~~-~~~iiP~~N~~Ea~lv~~~~~-v~~~~~L~evv~~l~ 73 (108)
+.+|++.| +++.++.+...+..+...... -+-+.+|.|+.++++
T Consensus 100 i~~A~~aG~~ti~v~~g~~~~~~~~~~~~~pd~~i~~l~el~~~l~ 145 (145)
T 1vjr_A 100 VKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGELAKAVQ 145 (145)
T ss_dssp HHHHHHHTCEEEEESSSSCCHHHHHHCSSCCSEEESSHHHHHHHHC
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEECCHHHHHHHHC
T ss_conf 9999987994999898999978897368999899899999999769
No 10
>>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789} (A:)
Probab=14.73 E-value=76 Score=14.37 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=0.0
Q ss_pred CCEEEEEEECCC
Q ss_conf 566899850357
Q gi|254781027|r 13 SHYLAVGEINLD 24 (108)
Q Consensus 13 ~~~~~iGELsLd 24 (108)
..+..|||.|||
T Consensus 154 ~~vvaIGEIGLD 165 (401)
T 3e2v_A 154 TSFRSIGEIGLD 165 (401)
T ss_dssp CSEEEEEEEEEE
T ss_pred CCEEEEEEECCC
T ss_conf 876899852557
Done!