Query gi|254781027|ref|YP_003065440.1| hypothetical protein CLIBASIA_04645 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs 107 out of 854
Neff 6.7
Searched_HMMs 23785
Date Wed Jun 1 00:00:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781027.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xhk_A Putative protease LA ho 99.2 2.6E-11 1.1E-15 76.7 6.7 68 4-74 110-185 (187)
2 2x36_A LON protease homolog, m 98.8 1.2E-08 5.1E-13 63.2 7.7 64 12-75 122-197 (207)
3 1rre_A ATP-dependent protease 98.8 7E-09 2.9E-13 64.4 6.4 64 13-76 115-190 (200)
4 1z0w_A Putative protease LA ho 98.8 1.2E-08 5.2E-13 63.2 7.3 63 13-75 115-188 (207)
5 3m6a_A ATP-dependent protease 98.5 1.1E-07 4.7E-12 58.3 4.3 68 12-79 457-537 (543)
6 3k1j_A LON protease, ATP-depen 97.8 2.3E-05 9.5E-10 46.6 5.1 64 13-76 506-580 (604)
7 1g8p_A Magnesium-chelatase 38 94.9 0.0036 1.5E-07 35.5 -0.0 15 94-108 22-36 (350)
8 1em8_B DNA polymerase III PSI 22.3 12 0.00048 17.7 -0.6 18 91-108 79-96 (112)
9 3pdw_A Uncharacterized hydrola 21.2 18 0.00074 16.8 0.2 13 62-74 248-260 (266)
10 3gg7_A Uncharacterized metallo 18.9 35 0.0015 15.3 1.3 15 10-24 76-90 (254)
No 1
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=99.19 E-value=2.6e-11 Score=76.69 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=57.9
Q ss_pred CCCCCHHHHCCEEEEEEECCCCCH-------HHHHHHHHCC-CEEEEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHCC
Q ss_conf 458885773566899850357753-------7999872039-8699836550455631288107510749999999709
Q gi|254781027|r 4 IQAISTESFSHYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAWASDSLRIVAPSTLLELINHLNN 74 (108)
Q Consensus 4 sgqi~~~~l~~~~~iGELsLdG~L-------p~al~a~~~~-~~~iiP~~N~~Ea~lv~~~~~v~~~~~L~evv~~l~g 74 (108)
..++|. -.++.|.|||+|||++ +.+.+|++.| +++|+|.+|..|+..+ ++++|++++||.|+++++.+
T Consensus 110 ~~~~~i--~~~~~~tGEl~L~G~V~~V~Gi~~ki~~A~~~G~~~viiP~~N~~e~~~~-~~i~i~~v~~l~eai~~l~~ 185 (187)
T 1xhk_A 110 LLDIPL--KQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEANMIDVIET-EGIEIIPVKTLDEIVPLVFD 185 (187)
T ss_dssp HHTCCB--CSSEEECCEECTTCBEECCSCHHHHHHHHHHTTCSEEEEEGGGGGGCCCC-CSSEEEEESBHHHHHHHHBC
T ss_pred HCCCCC--CCCEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCCCC-CCCEEEEECCHHHHHHHHHC
T ss_conf 649986--54179997025895688438999999999986999999887786551646-99599992829999999765
No 2
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens} PDB: 2x36_C
Probab=98.81 E-value=1.2e-08 Score=63.20 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=53.1
Q ss_pred HCCEEEEEEECCCCCH-------HHHHHHHHCC-CEEEEEHHHHHHHHH----HCCCCEEEECCCHHHHHHHHCCC
Q ss_conf 3566899850357753-------7999872039-869983655045563----12881075107499999997098
Q gi|254781027|r 12 FSHYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAW----ASDSLRIVAPSTLLELINHLNNK 75 (108)
Q Consensus 12 l~~~~~iGELsLdG~L-------p~al~a~~~~-~~~iiP~~N~~Ea~l----v~~~~~v~~~~~L~evv~~l~g~ 75 (108)
-.++.|.||++|+|.+ +.+.+|++.| +++|+|.+|..+..- +.++++|++++|+.|+++++..+
T Consensus 122 ~~~~a~tGei~l~G~V~pVggi~~ki~~A~~~G~k~viiP~~N~~~~~~~~~~i~~~i~i~~V~~i~e~~~~~~~~ 197 (207)
T 2x36_A 122 RQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGLEVHFVEHYREIFDIAFPD 197 (207)
T ss_dssp CTTEEECCEECTTSBEECCSCHHHHHHHHHHTTCCEEEEEGGGHHHHHTSCHHHHTTCEEEEESBHHHHHHHHCTT
T ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCC
T ss_conf 6217998400368713467887899999998599689974688665877069885797899979899999987347
No 3
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=98.81 E-value=7e-09 Score=64.41 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=52.7
Q ss_pred CCEEEEEEECCCCCH-------HHHHHHHHCC-CEEEEEHHHHHHHHHH----CCCCEEEECCCHHHHHHHHCCCC
Q ss_conf 566899850357753-------7999872039-8699836550455631----28810751074999999970986
Q gi|254781027|r 13 SHYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAWA----SDSLRIVAPSTLLELINHLNNKQ 76 (108)
Q Consensus 13 ~~~~~iGELsLdG~L-------p~al~a~~~~-~~~iiP~~N~~Ea~lv----~~~~~v~~~~~L~evv~~l~g~~ 76 (108)
.+++|.|||+|+|++ +.+.+|++.| +++|+|.+|..|..-+ .++++|++++|+.|++++.....
T Consensus 115 ~~~~~tGei~l~G~V~pVggi~~ki~~A~~~G~k~viiP~~N~~~l~~~~~~~~~~i~i~~v~~i~ea~~~~l~~~ 190 (200)
T 1rre_A 115 ADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNE 190 (200)
T ss_dssp TTEEECCEECTTCBEECCSCHHHHHHHHHHTTCCEEEEEGGGGGGGGGSCHHHHHHSEEEEESBHHHHHHHHBSSC
T ss_pred CCCEEEEEECCCCEEECCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCC
T ss_conf 7806987755894681588989999999986996999767776658863488757939999795999999996179
No 4
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=98.80 E-value=1.2e-08 Score=63.18 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=52.3
Q ss_pred CCEEEEEEECCCCCH-------HHHHHHHHCC-CEEEEEHHHHHHHHH---HCCCCEEEECCCHHHHHHHHCCC
Q ss_conf 566899850357753-------7999872039-869983655045563---12881075107499999997098
Q gi|254781027|r 13 SHYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAW---ASDSLRIVAPSTLLELINHLNNK 75 (108)
Q Consensus 13 ~~~~~iGELsLdG~L-------p~al~a~~~~-~~~iiP~~N~~Ea~l---v~~~~~v~~~~~L~evv~~l~g~ 75 (108)
.++.|.||++|||++ +.+.+|++.| +++|+|.+|..+..+ ..++++|++++|+.|+++++...
T Consensus 115 ~~~~~tGei~l~G~V~~Vggi~~ki~~a~~~G~k~viiP~~N~~d~~~~~~~~~~i~i~~V~~~~eal~~~l~~ 188 (207)
T 1z0w_A 115 QSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVLED 188 (207)
T ss_dssp TTEEECCEECTTSBEECCSCHHHHHHHHHHTTCSEEEEEGGGGGGCCCCTTTTTSSEEEEESBHHHHHHHHBCC
T ss_pred CCEEEEEEECCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCC
T ss_conf 20589999758975232099999999999859988998165310225470106986999969499999987206
No 5
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, cytoplasm, hydrolase, nucleotide-B protease, serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.46 E-value=1.1e-07 Score=58.31 Aligned_cols=68 Identities=26% Similarity=0.384 Sum_probs=53.3
Q ss_pred HCCEEEEEEECCCCC-HH------HHHHHHHCC-CEEEEEHHHHHHHH----HHCCCCEEEECCCHHHHHHH-HCCCCCC
Q ss_conf 356689985035775-37------999872039-86998365504556----31288107510749999999-7098646
Q gi|254781027|r 12 FSHYLAVGEINLDGS-LP------AAICAKNMN-KDFICPQSCGSEAA----WASDSLRIVAPSTLLELINH-LNNKQLL 78 (108)
Q Consensus 12 l~~~~~iGELsLdG~-Lp------~al~a~~~~-~~~iiP~~N~~Ea~----lv~~~~~v~~~~~L~evv~~-l~g~~~~ 78 (108)
-.+..|-||++|.|. +| -+++|++.| +++|+|.+|..+.. .+.++++|++|+|+.|++++ |.+....
T Consensus 457 ~~~iAmTGEitL~G~V~pVGGi~eKi~aA~raGi~~ViiP~~N~~dl~eip~~v~~~i~i~~V~~~~ev~~~al~~~~~~ 536 (543)
T 3m6a_A 457 SREVGMTGEITLRGRVLPIGGLKEKALGAHRAGLTTIIAPKDNEKDIEDIPESVREGLTFILASHLDEVLEHALVGEKKL 536 (543)
T ss_dssp CTTCEECCEECTTCBEECCSCHHHHHHHHHHTTCSBEEEEGGGGGGGGGSCHHHHTSCBCCEESBHHHHHHHHBC-----
T ss_pred CCCEEEEEEEECCCEEEECCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCH
T ss_conf 78824788774562068217879999999984998899777876779860499877989999492999999985698402
Q ss_pred C
Q ss_conf 7
Q gi|254781027|r 79 P 79 (108)
Q Consensus 79 ~ 79 (108)
.
T Consensus 537 e 537 (543)
T 3m6a_A 537 E 537 (543)
T ss_dssp -
T ss_pred H
T ss_conf 2
No 6
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.81 E-value=2.3e-05 Score=46.65 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=51.8
Q ss_pred CCEEEEEEECCCCCH-HH------HHHHHHCC-CEEEEEHHHHHHHHH---HCCCCEEEECCCHHHHHHHHCCCC
Q ss_conf 566899850357753-79------99872039-869983655045563---128810751074999999970986
Q gi|254781027|r 13 SHYLAVGEINLDGSL-PA------AICAKNMN-KDFICPQSCGSEAAW---ASDSLRIVAPSTLLELINHLNNKQ 76 (108)
Q Consensus 13 ~~~~~iGELsLdG~L-p~------al~a~~~~-~~~iiP~~N~~Ea~l---v~~~~~v~~~~~L~evv~~l~g~~ 76 (108)
++..+-||++|.|.+ |+ +.+|.+.| +++|+|.+|.....+ +.++++||+|+|+.|+++++.+..
T Consensus 506 ~~~a~TG~i~~~G~v~~vggv~eKi~~~~~~G~~~viiP~~N~~~l~l~~~~~~~~~i~~v~~i~e~~~~~~~~~ 580 (604)
T 3k1j_A 506 QDVAMTGSLSVRGEVLPIGGATPAIEAAIEAGIKMVIIPKSNEKDVFLSKDKAEKIQIFPVETIDEVLEIALEES 580 (604)
T ss_dssp TTEEECCEECTTSBEECCSCHHHHHHHHHHHTCCEEEEEGGGGGGCCCCHHHHTTCEEEEESBHHHHHHHHBCCS
T ss_pred CCEEEEEEECCCEEEEEECCHHHHHHHHHHHCCCEEEECHHHHHHHCCCHHHHCCEEEEEECCHHHHHHHHHHCC
T ss_conf 984799887798048860888999999998299989988756644168867757869999595999999985166
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20
Probab=94.93 E-value=0.0036 Score=35.52 Aligned_cols=15 Identities=47% Similarity=0.665 Sum_probs=9.1
Q ss_pred CHHHHCCHHHHHCCC
Q ss_conf 876715846630029
Q gi|254781027|r 94 NFAEIKGQKTIKRAL 108 (108)
Q Consensus 94 Df~dV~GQ~~aKRAL 108 (108)
||+||+||+.+||||
T Consensus 22 ~f~~ivGq~~~kraL 36 (350)
T 1g8p_A 22 PFSAIVGQEDMKLAL 36 (350)
T ss_dssp CGGGSCSCHHHHHHH
T ss_pred CHHHCCCCHHHHHHH
T ss_conf 976616949999999
No 8
>1em8_B DNA polymerase III PSI subunit; DNA POL III, heterodimer, clamp-loader, alpha-beta fold, gene regulation; HET: DNA; 2.10A {Escherichia coli} SCOP: c.126.1.1
Probab=22.34 E-value=12 Score=17.75 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=16.4
Q ss_pred CCCCHHHHCCHHHHHCCC
Q ss_conf 699876715846630029
Q gi|254781027|r 91 NLPNFAEIKGQKTIKRAL 108 (108)
Q Consensus 91 ~~~Df~dV~GQ~~aKRAL 108 (108)
..+.+++.++-..|||||
T Consensus 79 ~Sp~L~~L~~n~~aKRaL 96 (112)
T 1em8_B 79 ASPALTDLRANPTARAAL 96 (112)
T ss_dssp EECCHHHHHHCHHHHHHH
T ss_pred ECCCHHHHHCCHHHHHHH
T ss_conf 184899894497999999
No 9
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis}
Probab=21.22 E-value=18 Score=16.81 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=5.7
Q ss_pred CCCHHHHHHHHCC
Q ss_conf 0749999999709
Q gi|254781027|r 62 PSTLLELINHLNN 74 (108)
Q Consensus 62 ~~~L~evv~~l~g 74 (108)
+.+|.|++++|+|
T Consensus 248 i~sl~el~~~l~~ 260 (266)
T 3pdw_A 248 IDSLTEWIPYIEG 260 (266)
T ss_dssp ESSGGGGHHHHHH
T ss_pred ECCHHHHHHHHCC
T ss_conf 8999999998468
No 10
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans}
Probab=18.87 E-value=35 Score=15.29 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHCCEEEEEEECCC
Q ss_conf 773566899850357
Q gi|254781027|r 10 ESFSHYLAVGEINLD 24 (108)
Q Consensus 10 ~~l~~~~~iGELsLd 24 (108)
+.+.+..++||.|||
T Consensus 76 ~~~~~~~aIGEiGLD 90 (254)
T 3gg7_A 76 RYLPETRFVGEVGLD 90 (254)
T ss_dssp HHGGGCSEEEEEECC
T ss_pred HHCCCCCEEEEECCC
T ss_conf 867787168774566
Done!