RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781027|ref|YP_003065440.1| hypothetical protein
CLIBASIA_04645 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>1z0w_A Putative protease LA homolog type; ATP-dependent protease,
           catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A
           {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A
           1z0g_A 1z0t_A 1z0v_A (A:)
          Length = 207

 Score = 58.6 bits (141), Expect = 3e-10
 Identities = 11/101 (10%), Positives = 28/101 (27%), Gaps = 20/101 (19%)

Query: 13  SHYLAVGEINLDGS-------LPAAICAKNM-NKDFICPQSCGSEAAWASD---SLRIVA 61
                 G +++ G              A     K  I P+    +    ++    + ++ 
Sbjct: 115 QSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIP 174

Query: 62  PSTLLELINHLNNKQLLPQPCKSTYKKRDNLPNFAEIKGQK 102
            S + E++ H+                   +  F E++   
Sbjct: 175 VSRINEVLEHVLEDGKKKNR---------LMSKFKELELAA 206


>1xhk_A Putative protease LA homolog; LON protease, ATP dependent,
           catalytic DYAD, hydrolase; HET: MES; 1.90A
           {Methanocaldococcus jannaschii} (A:)
          Length = 187

 Score = 44.0 bits (103), Expect = 8e-06
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 14  HYLAVGEINLDGSL-------PAAICAKNMN-KDFICPQSCGSEAAWASDSLRIVAPSTL 65
            +   G ++L G++            AK    K  I P++   +       + I+   TL
Sbjct: 118 DFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEANXIDVIETEG-IEIIPVKTL 176

Query: 66  LELINHLNN 74
            E++  + +
Sbjct: 177 DEIVPLVFD 185


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 24.8 bits (54), Expect = 4.0
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 19/66 (28%)

Query: 4   IQAISTESFSHYLA--VGEINLDGSLPAAIC----AKNM-NKDF------ICPQSCGSEA 50
            + I +E  + +L     EI+ +     A      A+     DF      I P   G+ A
Sbjct: 55  AEEIPSEDQNEFLLERTREIHNE-----AESQLRAAQQQWGNDFYKRDPRIAPLR-GALA 108

Query: 51  AWASDS 56
            ++ DS
Sbjct: 109 TYSKDS 114


>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase;
           selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus}
           (A:1-95,A:393-612)
          Length = 315

 Score = 23.8 bits (51), Expect = 8.9
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 74  NKQLLPQPCKSTYKKRDNLPNFAEIKGQKTIKRAL 108
             QL     + T++ +D+LP+      ++++K+ L
Sbjct: 2   ENQLTKSVEERTFQYQDSLPSLPVPALEESLKKYL 36


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 747,884
Number of extensions: 27581
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 4
Length of query: 108
Length of database: 4,956,049
Length adjustment: 64
Effective length of query: 44
Effective length of database: 2,792,529
Effective search space: 122871276
Effective search space used: 122871276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)