RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781027|ref|YP_003065440.1| hypothetical protein
CLIBASIA_04645 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
           rossman fold, AAA+, photosynthesis, metal transport;
           2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20
          Length = 350

 Score = 31.5 bits (70), Expect = 0.048
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 80  QPCKSTYKKRDNLPNFAEIKGQKTIKRAL 108
           QP  S  K R   P F+ I GQ+ +K AL
Sbjct: 9   QPSASGAKTRPVFP-FSAIVGQEDMKLAL 36


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.0 bits (62), Expect = 0.48
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 20/54 (37%)

Query: 7   ISTESF-SHYLAVGEINLDGSLPAAICAKNMNKDFICPQSCGSEAAWASDSLRI 59
           +++  F SH L           PA+        D I      +  ++ +  ++I
Sbjct: 423 VAS-PFHSHLLV----------PAS--------DLINKDLVKNNVSFNAKDIQI 457


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.3 bits (59), Expect = 0.78
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 13/37 (35%)

Query: 1  MASIQAISTESFSHYLAVGEINLDGSLPA-AICAKNM 36
          +  +QA    S   Y A      D S PA AI A  M
Sbjct: 22 LKKLQA----SLKLY-A------DDSAPALAIKA-TM 46


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 5/16 (31%), Positives = 6/16 (37%), Gaps = 1/16 (6%)

Query: 33 AKNMNKDFICPQSCGS 48
            N+N    CP  C  
Sbjct: 15 GPNLNIVLTCP-ECKV 29


>2vvy_A Protein B15, B14; IKK, IKK beta, BCL-2 family, early protein,
          HOST-virus interaction, viral protein, immunomodulator,
          NF-KB activation; 2.69A {Vaccinia virus}
          Length = 169

 Score = 25.2 bits (55), Expect = 3.4
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 35 NMNKDFICPQSCGSEAAWASDSLRIVAPSTLLELINHLNNKQLLPQPCKSTYKKRDNLPN 94
          N +     PQ CG +   + D +R      L E I   +      Q     Y    +  +
Sbjct: 24 NFSTHVFSPQHCGCDRLTSIDDVRQC----LTEYIYWSSYAYRNRQCAGQLYSTLLSFRD 79

Query: 95 FAEIK 99
           AE+ 
Sbjct: 80 DAELV 84


>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, cytoplasm,
           hydrolase, nucleus, phospho protease, threonine
           protease, isopeptide bond; 3.00A {Saccharomyces
           cerevisiae} PDB: 3l5q_6
          Length = 997

 Score = 25.1 bits (54), Expect = 4.2
 Identities = 4/27 (14%), Positives = 6/27 (22%), Gaps = 4/27 (14%)

Query: 62  PSTLLELINHLNNKQLLPQPCKSTYKK 88
           P  L  L +             +  K 
Sbjct: 937 PKNLSNLSSWART----SGMTGNAAKN 959


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 861,975
Number of extensions: 32603
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 7
Length of query: 108
Length of database: 5,693,230
Length adjustment: 72
Effective length of query: 36
Effective length of database: 3,947,662
Effective search space: 142115832
Effective search space used: 142115832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)