BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781027|ref|YP_003065440.1| hypothetical protein
CLIBASIA_04645 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781027|ref|YP_003065440.1| hypothetical protein CLIBASIA_04645 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 108

 Score =  224 bits (570), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MASIQAISTESFSHYLAVGEINLDGSLPAAICAKNMNKDFICPQSCGSEAAWASDSLRIV 60
           MASIQAISTESFSHYLAVGEINLDGSLPAAICAKNMNKDFICPQSCGSEAAWASDSLRIV
Sbjct: 1   MASIQAISTESFSHYLAVGEINLDGSLPAAICAKNMNKDFICPQSCGSEAAWASDSLRIV 60

Query: 61  APSTLLELINHLNNKQLLPQPCKSTYKKRDNLPNFAEIKGQKTIKRAL 108
           APSTLLELINHLNNKQLLPQPCKSTYKKRDNLPNFAEIKGQKTIKRAL
Sbjct: 61  APSTLLELINHLNNKQLLPQPCKSTYKKRDNLPNFAEIKGQKTIKRAL 108


>gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 281

 Score = 22.3 bits (46), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 63  STLLELINHLNNKQLLP-------QPCKSTYKKRDNLPNFAEIKGQKTIKRAL 108
           S L  +++  NN ++L        + CKS    R +LP+      Q  IK  L
Sbjct: 191 SMLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADLPSIGAKTVQNVIKAGL 243


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.129    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,644
Number of Sequences: 1233
Number of extensions: 2297
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 328,796
effective HSP length: 62
effective length of query: 46
effective length of database: 252,350
effective search space: 11608100
effective search space used: 11608100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)